Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0014807

Physical Location & Seq

Genomic Coordinates Reverse (-)

59721770 .. 59760753

Gene Structure 38984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG431800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATGGTGTCAAAGAGCTTGCTGAGTTTGTCTGAGATTTTGATCAAGTACATAGCATTGAAGGAGCAGAAAGTGTTGGACCATGAGAAGGTTCAAGTGGAGCAAGAGAAGACCAGGGTTCAGAAGTTGTTGAATGGGTTGCAGAACTCAATAAACGTTTACAATGCCAGTGGAAACCCCCAAATCTCCAAAGTTTCGAATGCGGCACCGAAACAAATGCACATGGATCCTCAATCTCGCCTATCTAATAGGTCTTCTACAGCCTCTGCAAACCCAAATGGGCCTGATGGGTTTTCTTGGGTGAGTCTGGCTCGGTCTATACGCCGCGGTTCGGAGCAGTTCTGGTCCAATTTTGGTGACTCGGTGAAGAAGGAAACTGGGTTTGATTTGAAGGATGTGAATGTGAAGGTGGGGGAGTATTTGGGGCAAGCTGGGGAAGAATTAAAGAGAGGTGGGACTAAGTTGGAAAGGTTTAGGACTGAGTTAGTGCCCGAGTTTGTGAGTTGGAATCAGTGGGAAAGATGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

176

Amino Acids

19.97

Weight (kDa)

9.55

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014807)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209500.v1.1 MD10G1209600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060561
rosa_roxburghii	Rroxscaffold_1G00021830 Rroxscaffold_2G00110380 Rroxscaffold_3G00232160 Rroxscaffold_4G00310800 Rroxscaffold_7G00172290
rosa_samantha	Rh5CG431800 Rh6AG098400 Rh6BG090100 Rh6CG087000 Rh6DG081200 Rh7AG362700 Rh7BG287700 Rh7CG467600 Rh7DG450000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	205
AccII	CGCG	1 cut(s)	327
AciI	CCGC	3 cut(s)	203, 325, 327
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	2 cut(s)	221, 234
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	88, 331
AgsI	TTSAA	4 cut(s)	61, 95, 133, 391
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	2 cut(s)	18, 431
AluI	AGCT	2 cut(s)	18, 431
AlwI	GGATC	2 cut(s)	221, 234
AlwNI	CAGNNNCTG	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	491
AoxI	GGCC	1 cut(s)	281
AspS9I	GGNCC	3 cut(s)	79, 281, 345
AsuHPI	GGTGA	3 cut(s)	313, 368, 376
AsuII	TTCGAA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	491
AvaII	GGWCC	2 cut(s)	79, 345
BaeGI	GKGCMC	1 cut(s)	492
BamHI	GGATCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	205
BbsI	GAAGAC	2 cut(s)	116, 246
BccI	CCATC	2 cut(s)	281, 516
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	1 cut(s)	115
BclI	TGATCA	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	2 cut(s)	204, 325
BlsI	GCNGC	2 cut(s)	205, 326
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	2 cut(s)	79, 345
BmeT110I	CYCGRG	1 cut(s)	491
BmgT120I	GGNCC	3 cut(s)	79, 281, 345
BmiI	GGNNCC	2 cut(s)	207, 228
BmrFI	CCNGG	1 cut(s)	115
BmrI	ACTGGG	1 cut(s)	387
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	2 cut(s)	116, 246
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
Bpu14I	TTCGAA	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	114, 325
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 331
Bse1I	ACTGG	2 cut(s)	168, 382
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	114, 325
BseGI	GGATG	1 cut(s)	400
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	2 cut(s)	88, 331
BseMII	CTCAG	3 cut(s)	14, 24, 471
BseNI	ACTGG	2 cut(s)	168, 382
BseSI	GKGCMC	1 cut(s)	492
BseYI	CCCAGC	1 cut(s)	431
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	283
BshNI	GGYRCC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	491
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	2 cut(s)	88, 331
BsmFI	GGGAC	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	491
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	42, 226
BspACI	CCGC	3 cut(s)	203, 325, 327
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	3 cut(s)	15, 25, 472
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	207, 228
BspPI	GGATC	2 cut(s)	221, 234
BspT104I	TTCGAA	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	168, 382
BssECI	CCNNGG	2 cut(s)	114, 325
BssMI	GATC	2 cut(s)	42, 226
Bst2UI	CCWGG	1 cut(s)	115
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	20, 429
BstDEI	CTNAG	4 cut(s)	23, 33, 459, 480
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	327
BstKTI	GATC	2 cut(s)	45, 229
BstMBI	GATC	2 cut(s)	42, 226
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	492
BstUI	CGCG	1 cut(s)	327
BstV2I	GAAGAC	2 cut(s)	116, 246
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	283
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	175, 518
Cac8I	GCNNGC	2 cut(s)	20, 429
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr13I	GGNCC	3 cut(s)	79, 281, 345
Cfr42I	CCGCGG	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	49
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	2 cut(s)	83, 223
CviJI	RGCY	5 cut(s)	18, 263, 283, 311, 431
CviKI_1	RGCY	5 cut(s)	18, 263, 283, 311, 431
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	4 cut(s)	23, 33, 459, 480
DpnI	GATC	2 cut(s)	44, 228
DpnII	GATC	2 cut(s)	42, 226
Eco47I	GGWCC	2 cut(s)	79, 345
Eco88I	CYCGRG	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	113
FaeI	CATG	2 cut(s)	86, 226
FaiI	YATR	4 cut(s)	53, 84, 224, 320
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	2 cut(s)	82, 222
FbaI	TGATCA	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	204, 325
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	2 cut(s)	204, 325
GluI	GCNGC	2 cut(s)	204, 325
GsaI	CCCAGC	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	86, 226
HinfI	GANTC	3 cut(s)	304, 359, 508
HphI	GGTGA	3 cut(s)	313, 368, 376
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	34, 123, 334
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	5 cut(s)	55, 82, 364, 385, 400
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	142, 220, 269
HpyF3I	CTNAG	4 cut(s)	23, 33, 459, 480
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	86, 226
Ksp22I	TGATCA	1 cut(s)	42
KspI	CCGCGG	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	42, 226
LmnI	GCTCC	3 cut(s)	64, 100, 334
LpnPI	CCDG	8 cut(s)	100, 127, 181, 293, 297, 328, 363, 417
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	2 cut(s)	44, 228
MboI	GATC	2 cut(s)	42, 226
MboII	GAAGA	4 cut(s)	121, 246, 379, 449
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	2 cut(s)	349, 440
MlyI	GAGTC	2 cut(s)	313, 353
MmeI	TCCRAC	3 cut(s)	57, 444, 485
MnlI	CCTC	3 cut(s)	240, 274, 443
MseI	TTAA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	115
MvnI	CGCG	1 cut(s)	327
NdeII	GATC	2 cut(s)	42, 226
NlaIII	CATG	2 cut(s)	86, 226
NlaIV	GGNNCC	2 cut(s)	207, 228
NmuCI	GTSAC	1 cut(s)	356
NspV	TTCGAA	1 cut(s)	197
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	508
PkrI	GCNGC	2 cut(s)	205, 326
PleI	GAGTC	2 cut(s)	312, 353
PpsI	GAGTC	2 cut(s)	312, 353
Psp1406I	AACGTT	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	207, 228
PspPI	GGNCC	3 cut(s)	79, 281, 345
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacII	CCGCGG	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	2 cut(s)	204, 325
Sau3AI	GATC	2 cut(s)	42, 226
Sau96I	GGNCC	3 cut(s)	79, 281, 345
SchI	GAGTC	2 cut(s)	313, 353
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	8 cut(s)	20, 93, 159, 254, 411, 433, 454, 473
SfcI	CTRYAG	1 cut(s)	258
Sfr303I	CCGCGG	1 cut(s)	328
SfuI	TTCGAA	1 cut(s)	197
SgrBI	CCGCGG	1 cut(s)	328
SinI	GGWCC	2 cut(s)	79, 345
Sse9I	AATT	2 cut(s)	349, 440
SsiI	CCGC	3 cut(s)	203, 325, 327
StyD4I	CCNGG	1 cut(s)	113
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	197
TaqII	GACCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	349, 440
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	206, 327
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	2 cut(s)	175, 518
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspRI	CASTG	2 cut(s)	175, 518
VpaK11BI	GGWCC	2 cut(s)	79, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.