Rroxscaffold_1G00021830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014807
Physical Location & Seq
Forward (+)
26850975 .. 26851993
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021830.1

Sequence Viewer

Length: 270 bp
ATGAAGCCTCAAGTGCCGCTGTTCGAAGGTCCTCAACTCCAAGACTTGCTGGGAACGAGAGAAGATTCACAGCTCGGGTGCTTGCGATGTCGAGTTCCCGGTTGTGCATCCTCCTTGGAGTTATCATTTGTACGGGGTGAAGTTCAAGAGGATACTGGAACATGGCGTGAAAGACTTCGAAATGGAAGGAGATCCTCCAAAAGAAAAGTTAGCGGAACAGTTGGATCTGTAAACTCACAATCTGCGGTTCCCAATTATAGGAGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.93

Weight (kDa)

10.05

Isoelectric Point (pI)

61.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 17, 213, 245
AclWI GGATC 2 cut(s) 186, 232
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 2 cut(s) 186, 232
Ama87I CYCGRG 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 149
AsuII TTCGAA 2 cut(s) 24, 178
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 29
BciVI GTATCC 1 cut(s) 145
BcnI CCSGG 1 cut(s) 99
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 116
Bpu14I TTCGAA 2 cut(s) 24, 178
BpuMI CCSGG 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 74
Bsp119I TTCGAA 2 cut(s) 24, 178
Bsp143I GATC 2 cut(s) 191, 224
BspACI CCGC 3 cut(s) 17, 213, 245
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 2 cut(s) 186, 232
BspT104I TTCGAA 2 cut(s) 24, 178
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 191, 224
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 220
BstBI TTCGAA 2 cut(s) 24, 178
BstC8I GCNNGC 1 cut(s) 83
BstF5I GGATG 1 cut(s) 107
BstKTI GATC 2 cut(s) 194, 227
BstMBI GATC 2 cut(s) 191, 224
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 97
BstX2I RGATCY 2 cut(s) 191, 224
BstYI RGATCY 2 cut(s) 191, 224
BsuI GTATCC 1 cut(s) 145
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 131
CviAII CATG 1 cut(s) 162
CviJI RGCY 2 cut(s) 7, 73
CviKI_1 RGCY 2 cut(s) 7, 73
CviQI GTAC 1 cut(s) 131
DpnI GATC 2 cut(s) 193, 226
DpnII GATC 2 cut(s) 191, 224
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 165
FaiI YATR 3 cut(s) 163, 258, 268
FatI CATG 1 cut(s) 161
Fnu4HI GCNGC 1 cut(s) 17
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 17
GsaI CCCAGC 1 cut(s) 53
HapII CCGG 1 cut(s) 99
Hin1II CATG 1 cut(s) 165
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 20, 180
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
Hsp92II CATG 1 cut(s) 165
Kzo9I GATC 2 cut(s) 191, 224
LpnPI CCDG 3 cut(s) 35, 112, 141
LweI GCATC 1 cut(s) 116
MalI GATC 2 cut(s) 193, 226
MboI GATC 2 cut(s) 191, 224
MboII GAAGA 1 cut(s) 74
MflI RGATCY 2 cut(s) 191, 224
MluCI AATT 1 cut(s) 253
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 6 cut(s) 18, 42, 121, 142, 205, 255
MroXI GAANNNNTTC 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 13
NciI CCSGG 1 cut(s) 99
NdeII GATC 2 cut(s) 191, 224
NlaIII CATG 1 cut(s) 165
NlaIV GGNNCC 1 cut(s) 249
NspV TTCGAA 2 cut(s) 24, 178
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 18
PpuMI RGGWCCY 1 cut(s) 29
Psp5II RGGWCCY 1 cut(s) 29
PspFI CCCAGC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 29
PspPPI RGGWCCY 1 cut(s) 29
PsuI RGATCY 2 cut(s) 191, 224
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 2 cut(s) 191, 224
Sau96I GGNCC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 99
SetI ASST 3 cut(s) 31, 75, 266
SfaNI GCATC 1 cut(s) 116
SfuI TTCGAA 2 cut(s) 24, 178
SinI GGWCC 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 1 cut(s) 253
SsiI CCGC 3 cut(s) 17, 213, 245
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 3 cut(s) 24, 91, 178
TasI AATT 1 cut(s) 253
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.