Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014807

Physical Location & Seq

Genomic Coordinates Forward (+)

9480885 .. 9495115

Gene Structure 14231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG087000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCTATGGTTAAGAATGAAAAAGACTGCTCCGACGCCATCGACCACTTCAAGTACTTCAATCTCTTCCTTAATTATTGTTTGTGTGAGATTGAAGATTATTGCTACAAGTATTTTAGTTTTTGTTGGGTTTTGCTCACAAGTTGCAAGTTGGAATTGGATAAGCTTGAGCAAAGGGAGTGCCTAAATGGTAGGGGAACTTACTACAGACTTATGAATGAATTGTTCAGTGAGCAATTTGGACCAGAGACAGGAAATGCAGTTCGAGGGTATGGACTTGGAGTAGAGTGGGTTGATGTTCCTGGAATACAAACTGCAAAGCTAGCAGTTTCTCGCGATGTGTCAAAGAGCTTGCTGAGTTTGTTTGAGATTCTGATCAAGTACATAGCATTGAAGGAGCAGAAAGTGTTGGACCATGAGAAGGTTCAAGTGGAGCAAGAGAAGACCAGGGTTCAGAAGTTGTTGAATGGGTTGCAGAACTCAATAAACGTTTACAATGCCAGTGGAAACCCCCAAGTCTCCAAAGTTTCGAATGCGGCACCGAAACAAATGCACATGGCTCCTCAGTCTCGCCTATCTAATGAGTCTTCTACAGCCTCTGCAAACCCAAATGGGCCTGATGGGTTTTCTTGGGTGAGTCTGGCTCGGTCTATACACCGAGGTTCGGAGCAATTCTGGTCCAATTTAGGTGACTCGGTGAAGAAGGAAACTGGGTTTGATTTGAAGGAGGTGAATGTGAAGGTGGGGGAGTATTTGGGGCAAGGTGGGGGAGTATTTGGGGCAAGCTGGGGAAGGATTAAAGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

269

Amino Acids

30.31

Weight (kDa)

6.9

Isoelectric Point (pI)

27.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014807)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209500.v1.1 MD10G1209600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060561
rosa_roxburghii	Rroxscaffold_1G00021830 Rroxscaffold_2G00110380 Rroxscaffold_3G00232160 Rroxscaffold_4G00310800 Rroxscaffold_7G00172290
rosa_samantha	Rh5CG431800 Rh6AG098400 Rh6BG090100 Rh6CG087000 Rh6DG081200 Rh7AG362700 Rh7BG287700 Rh7CG467600 Rh7DG450000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	538
AccII	CGCG	1 cut(s)	336
AciI	CCGC	1 cut(s)	536
AclI	AACGTT	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	2 cut(s)	56, 383
AfiI	CCNNNNNNNGG	3 cut(s)	251, 421, 664
AgsI	TTSAA	7 cut(s)	52, 61, 95, 394, 428, 466, 724
AjnI	CCWGG	2 cut(s)	301, 446
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	4 cut(s)	166, 322, 351, 786
AluI	AGCT	4 cut(s)	166, 322, 351, 786
Alw26I	GTCTC	3 cut(s)	242, 523, 573
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	1 cut(s)	614
AspS9I	GGNCC	4 cut(s)	242, 412, 614, 678
AsuHPI	GGTGA	4 cut(s)	646, 701, 709, 742
AsuII	TTCGAA	1 cut(s)	530
AsuNHI	GCTAGC	1 cut(s)	322
AvaII	GGWCC	3 cut(s)	242, 412, 678
BanI	GGYRCC	1 cut(s)	538
BbsI	GAAGAC	2 cut(s)	449, 579
BccI	CCATC	2 cut(s)	47, 614
BcgI	CGANNNNNNTGC	2 cut(s)	532, 566
BciT130I	CCWGG	2 cut(s)	303, 448
BclI	TGATCA	1 cut(s)	375
BcoDI	GTCTC	3 cut(s)	242, 523, 573
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	2 cut(s)	205, 591
BisI	GCNGC	1 cut(s)	537
BlsI	GCNGC	1 cut(s)	538
BmcAI	AGTACT	1 cut(s)	56
Bme1390I	CCNGG	2 cut(s)	303, 448
Bme18I	GGWCC	3 cut(s)	242, 412, 678
BmgT120I	GGNCC	4 cut(s)	242, 412, 614, 678
BmiI	GGNNCC	2 cut(s)	540, 561
BmrFI	CCNGG	2 cut(s)	303, 448
BmrI	ACTGGG	1 cut(s)	720
BmtI	GCTAGC	1 cut(s)	326
BmuI	ACTGGG	1 cut(s)	720
BpiI	GAAGAC	2 cut(s)	449, 579
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
Bpu14I	TTCGAA	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	447, 658
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 421, 664
Bse1I	ACTGG	2 cut(s)	501, 715
Bse8I	GATNNNNATC	1 cut(s)	374
BseBI	CCWGG	2 cut(s)	303, 448
BseDI	CCNNGG	2 cut(s)	447, 658
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	3 cut(s)	251, 421, 664
BseMII	CTCAG	2 cut(s)	347, 578
BseNI	ACTGG	2 cut(s)	501, 715
BseRI	GAGGAG	1 cut(s)	552
BseYI	CCCAGC	1 cut(s)	786
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	616
BshNI	GGYRCC	1 cut(s)	538
BslI	CCNNNNNNNGG	3 cut(s)	251, 421, 664
BsmAI	GTCTC	3 cut(s)	242, 523, 573
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	1 cut(s)	616
Bsp119I	TTCGAA	1 cut(s)	530
Bsp143I	GATC	1 cut(s)	375
Bsp68I	TCGCGA	1 cut(s)	336
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	1 cut(s)	616
BspCNI	CTCAG	2 cut(s)	348, 577
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	540, 561
BspOI	GCTAGC	1 cut(s)	326
BspT104I	TTCGAA	1 cut(s)	530
BspT107I	GGYRCC	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	501, 715
BssECI	CCNNGG	2 cut(s)	447, 658
BssMI	GATC	1 cut(s)	375
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	303, 448
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	530
BstC8I	GCNNGC	3 cut(s)	324, 353, 784
BstDEI	CTNAG	2 cut(s)	356, 564
BstFNI	CGCG	1 cut(s)	336
BstKTI	GATC	1 cut(s)	378
BstMAI	GTCTC	3 cut(s)	242, 523, 573
BstMBI	GATC	1 cut(s)	375
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	2 cut(s)	303, 448
BstSCI	CCNGG	2 cut(s)	301, 446
BstSFI	CTRYAG	2 cut(s)	205, 591
BstUI	CGCG	1 cut(s)	336
BstV2I	GAAGAC	2 cut(s)	449, 579
BsuRI	GGCC	1 cut(s)	616
BtgZI	GCGATG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	235, 508
BtuMI	TCGCGA	1 cut(s)	336
Cac8I	GCNNGC	3 cut(s)	324, 353, 784
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr13I	GGNCC	4 cut(s)	242, 412, 614, 678
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	55, 382
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	2 cut(s)	416, 556
CviJI	RGCY	9 cut(s)	5, 166, 322, 351, 560, 596, 616, 644, 786
CviKI_1	RGCY	9 cut(s)	5, 166, 322, 351, 560, 596, 616, 644, 786
CviQI	GTAC	2 cut(s)	55, 382
DdeI	CTNAG	2 cut(s)	356, 564
DpnI	GATC	1 cut(s)	377
DpnII	GATC	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco47I	GGWCC	3 cut(s)	242, 412, 678
EcoRII	CCWGG	2 cut(s)	301, 446
FaeI	CATG	2 cut(s)	419, 559
FaiI	YATR	7 cut(s)	8, 215, 273, 386, 417, 557, 653
FatI	CATG	2 cut(s)	415, 555
FbaI	TGATCA	1 cut(s)	375
Fnu4HI	GCNGC	1 cut(s)	537
Fsp4HI	GCNGC	1 cut(s)	537
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	1 cut(s)	537
GsaI	CCCAGC	1 cut(s)	790
HaeIII	GGCC	1 cut(s)	616
HgaI	GACGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	419, 559
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	4 cut(s)	370, 584, 637, 692
HphI	GGTGA	4 cut(s)	646, 701, 709, 742
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	4 cut(s)	34, 375, 456, 667
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	1 cut(s)	493
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	6 cut(s)	388, 415, 697, 718, 733, 786
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	6 cut(s)	147, 260, 317, 475, 553, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	356, 564
HpySE526I	ACGT	1 cut(s)	489
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	419, 559
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	1 cut(s)	375
LmnI	GCTCC	5 cut(s)	35, 397, 433, 565, 667
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	1 cut(s)	377
MboI	GATC	1 cut(s)	375
MboII	GAAGA	5 cut(s)	58, 107, 454, 579, 712
MluCI	AATT	6 cut(s)	73, 155, 221, 236, 671, 682
MlyI	GAGTC	3 cut(s)	593, 646, 686
MmeI	TCCRAC	3 cut(s)	57, 132, 390
MnlI	CCTC	6 cut(s)	260, 573, 607, 653, 721, 798
MseI	TTAA	3 cut(s)	12, 72, 798
MspR9I	CCNGG	2 cut(s)	303, 448
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	2 cut(s)	303, 448
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	1 cut(s)	375
NheI	GCTAGC	1 cut(s)	322
NlaIII	CATG	2 cut(s)	419, 559
NlaIV	GGNNCC	2 cut(s)	540, 561
NmuCI	GTSAC	1 cut(s)	689
NruI	TCGCGA	1 cut(s)	336
NspV	TTCGAA	1 cut(s)	530
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	370
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	538
PleI	GAGTC	3 cut(s)	592, 645, 686
PpsI	GAGTC	3 cut(s)	592, 645, 686
Psp1406I	AACGTT	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	301, 446
PspFI	CCCAGC	1 cut(s)	786
PspGI	CCWGG	2 cut(s)	301, 446
PspN4I	GGNNCC	2 cut(s)	540, 561
PspPI	GGNCC	4 cut(s)	242, 412, 614, 678
PstNI	CAGNNNCTG	1 cut(s)	599
RruI	TCGCGA	1 cut(s)	336
RsaI	GTAC	2 cut(s)	56, 383
RsaNI	GTAC	2 cut(s)	55, 382
SaqAI	TTAA	3 cut(s)	12, 72, 798
SatI	GCNGC	1 cut(s)	537
Sau3AI	GATC	1 cut(s)	375
Sau96I	GGNCC	4 cut(s)	242, 412, 614, 678
ScaI	AGTACT	1 cut(s)	56
SchI	GAGTC	3 cut(s)	593, 646, 686
ScrFI	CCNGG	2 cut(s)	303, 448
SfcI	CTRYAG	2 cut(s)	205, 591
SfuI	TTCGAA	1 cut(s)	530
SinI	GGWCC	3 cut(s)	242, 412, 678
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	6 cut(s)	73, 155, 221, 236, 671, 682
SsiI	CCGC	1 cut(s)	536
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	2 cut(s)	301, 446
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	3 cut(s)	42, 265, 530
TaqII	GACCGA	1 cut(s)	636
TasI	AATT	6 cut(s)	73, 155, 221, 236, 671, 682
TatI	WGTACW	2 cut(s)	54, 381
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	3 cut(s)	12, 72, 798
Tru9I	TTAA	3 cut(s)	12, 72, 798
TscAI	CASTG	2 cut(s)	235, 508
TseFI	GTSAC	1 cut(s)	689
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	3 cut(s)	33, 230, 234
TspRI	CASTG	2 cut(s)	235, 508
VpaK11BI	GGWCC	3 cut(s)	242, 412, 678
XspI	CTAG	1 cut(s)	323
ZrmI	AGTACT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.