MD11G1187100.v1.1

DDT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003576
Physical Location & Seq
Forward (+)
26288350 .. 26299161
10812 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1187100.v1.1.491

Sequence Viewer

Length: 5016 bp
ATGGAGTTCGTGGGAAGAAGTGTGAAGAAGGAGCTCAAAGGCCACGGTTTTTTCACCGGAACTGTGAAATCGTACGCCGCCACATCTGGGTTGTTCGAGGTCGTCTATGAAGATGGAAATACTGAGGAGTTGAGCTTCGATGAGGTCTCTCTGCTCCTTGGTTGCGGTGCTGAGGTTGACCTCGTGGAGGCCGCCGCCAAACCGGGCCGGAAGCCCAAAAAACGGCGGCGTATTGAAAGGAAGCGAGAAATTCGAGGTAATGCTGCTCTTGGAAATGCTTCTGGGTTTGATGGGGATTTGAATGAAAATTGTAATTTGAGTGATGGGTCTGAGGGAAAATTGGAACTTGAACAGAGGTTTGGAGGGAATTTGAGGGAAAATGTGGCGGTTAGTGGGAATTTGAATGAAAATGTTGATTCTAGTAATGTAGTGGATAAGACCCTAGAACAGGGAACTGGGTTGATTACTAATGGGGATGTGAATCGAGTAGGTAATTTGAAAAATGGGATTGATTTGAATGCTGGGTTTAATTTGAATTTGAATGATGGATGTGACTTGAATGTTGATTCAAATGTTGGCATGGAGGGGGTTGTGGAGAAAAGAGATTGTATTGATTTGAATTTGGATGCAAATGACGACTTTGTTGAGAATCGGAATGGGGATAGTAGTTTGGGAGGTTCAACTTTGGTTACCCATGGAACCCAGAAGAGGGGCTGCGATTTTGATCTCAATTTAGAAGTTAATGAGGAGTTTAAGGATACAGAATGTGACTGTGAAGAAAAATTCAAGGTTAATCCCAAGTTTGAGATGATTGAAGGAAGTCTAGAAAAAGAGAGGAGTGGAGATGGTGAAGAAAAGATTACCGAAGATGGTAATTCTAATGGGATGTGTAAGGAAGTGTATATTGATATTAATGAAGATGTTCCCATGAGGAACGTTGATGACCCTATTGACTGTGCAGCTGGTGAACGACTTGATGATAAAAATTGTTGTTCCAGTGGAGATTTGAAAGCTGATAATTCGGTTGGGATTTTTGACACTGGCTGCATTAAAGATAGTGGATTGGTGGAAGTTCTGGTAAAAGATAGTCTCTCTGAGGCTCGCACTCCAATGATTCATGGAAACCTAGGCGATTCAGGAAGTCCATGCATTAAAAAAAGTAGCCGTAGAAAGAGGAGAAAACTACTGGATAATTTGAAATCTACGACTACAGAGACAGTTTTGAGGAGAAGTGCTCGTAGAGGTTCTGCTCTAAATCATGTTTCTGTCAGTGATCCATTGTCCTCTTCTGCAGTGAGTGCAATAACAGAGGAAAAACCAGTGATTTCTGGTTGTGAAGAGACTGAAAAGCCCAGTGTTCTTCCTCAGTCTCTCGAATTACCTCCTTCATCACAACATTTAAATCTAGATGGAATTCCCGTACTTGACCTTTTTTCTATTTATGCTTGTTTAAGATCATTTAGCACTCTATTATTTCTGAGTCCCTTCAAGTTGGAGGATTTTGTGGCCGCACTAACGTGCAAGACTCCTAGCTCGTTATTCGATCATGTTCATGTTTCTATTTTACAAACACTGAGAAAACACTTGGAGTGGCTCGCAAATGAAGGTGACGAATCTGCTTCTAATTGTCTGAGGAGTCTCAATTGGGATTTTCTTGACTTGATTACGTGGCCAATTTTTATGGTGGAGTATTTCTTGATCCATGGTTCGGGACTAAAACCGGGTTTTGATCTCGGTTGCTTCAAGCTATACAAAATTGACTACTACACACAACCTGCTTCTGTAAAAGTTGAAATACTGCGGTGTCTTTGTGATGATTTGATAGAAGTGGAAGCCGTAAGGTCAGAGATTAATAGAAGGTCTTTGGCAGCTGAGCCGGACATGGTGAATGACCGGAATTTGAACTATGAGGTTGGCAAGAAAAGGAAGGCTCCAGTGGAGGTCGCTGGTACCTCGAATTTGAATGATGAGGTTGATGATGACACCAACGACTGGAATAGTGATGAATGCTGCCTCTGTAAGATGGATGGAAATTTAATATGCTGTGATGGTTGTCCTGCTGCATATCATTCAAAATGTGTTGGAGTTTCTAATGATCTTTTGCCGGAGGGTGACTGGTACTGCCCTGAGTGTTTGATTGACCGGCATAGACATTGGATGAATTTGCAGAAGTCACTCCGAGGTGCAGAGATATTAGGGATTGATCCTTGTGGCCGGCTATATTTTAAAAGTTGTGGGTACCTGTTGGTATCAGATTCTTTTGATCGTGAGTCCACATTCAACTATTATGACAGAAATGATCTGAATAAAGTTATTGAAGTGCTAAGGTCTTCAGGTTTTTTCTATGGTGGGATATTAGTGGCAATCTGCAAGCACTGGGACATTCCTGTTAGTTTTGAAGGAGCAGATGGCAACATTGGTTACTCGATGCCCCTGGACCCTTTGGCATTTTCAGAAACATGTGCTGCTAAGAATGAGACTGATGAAGATAAAAAACTGCAAGAAAATTCAGTGACTGTGACAACAATGCCAAATATAACTTCTGAAGTGCCAGCTGAAACCATGCAAGTGGAAAGGTCAGTCATGCCGTGCGATTTAGATAGACCTGACTTTGTGAAAAAACCTCAGCCTGAAGACTCTTCTTCACCATCTACTAGCTTACATGTTAGAAGGGGAATCAATAAACATAATATGGATCTTGGCAATGCTTTGTCTTCAATAACCGCTAGAAAAGGGGGCACTTCAGAAGTGTATTGTAGATTTGGTTATATGAACTATTACAGTTTTGGCCAAATTGCTTCATCTGTTGCCGAGGAGTTGACGCGTAAGTCATCAGAAAAAATTAAAGAAGATAAAATAATAACAGAAGAGGAAATAATATCAGCACAGATGAAGACCATTTTAAAAAAATCGTCCAAATTTTTCTGGCCAAATATTGAGAACCTAAATACAGGTGCACAGAAGGAGAAATGTGGTTGGTGCTTTTCTTGCAAAGCTCCTGCTGATGACAAGGATTGCTTGTTTATCATGAGTATGGGGTCTATTCAGGATGCTTCTTATAGTGATAGAGTTGGCCTTCAATTGAAAAAGAGTGGGAAAGGTCATCTTAATGATGTCAGCTGTCAAATCCTATCTATTCATGATCGTCTGCAGGGACTTCTGTTGGGCCCATGGTTGAATCCACTTCACGTAGAACTGTGGCGTAAAACCCTTATTCAGGCATCTAGCATTGCCTCCATTAAATATTTACTTCTTATGTTGGAGGCAAATCTGCGTCATCGTGCACTTTCAGCAGACTGGTTGAAACATGTAGATTCTGTTAATACCGTGGGCTCAGCTTCTCATGTTGTGACTTCATTACGTAGCAGAAGAAGGATCAAGTGTTCAGATAGTGAGTCCAACCCCTCTTTAAATGCTGCCAGTGGATTGGGAATGTTTTGGTGGAGGGGTGGTAGGCTTTCTCGTCAGGTTTTCAGTTGGAAGGTTTTGCCTCGTTCCTTGACTTCCAAGGGTGCCAGACAAGCTGGGTGTACAAAGATACTGGGTATTTTATATCCTGAGAATTCAGAATATGCTAAGAGAAGCAAATCTATTGCCTGGCGAGCTGCTGTTGAGGCCTCAACTAGTGCAGAACAGCTTGCTTTACAGGTTAGAGAGCTTGATTCAAACATTAAATGGGATGATATTGAGAATTCACACCCTCTGCCCACGTTGGACAAAGAGTCGAGAAAATCAATCAAGTTGTTCAAGAAAGTTATTGTCCGCAGGAAGTGCTCTGAAGGGGGGGTGGTTAAGTATCTTCTTGATTTTGGTAAGAGAAGAGCTATCCCTGACATTGTGAAGAGATGGGGTTCTCTGGTTGAAGAACTGTCCAGTGAGAAGAAAAAGTATTGGCTGGATGAATCATATCTTCCCTTGCATCTTTTGAAAAATTTTGAAGAGAGAAGGATTGCCCGAAAGTCTACTGATGTGAAATCTGGGAAAGTTCTTGAGGTTGCCAGAGTAACAAAGAGGCCCCGGGAAGAAAAGGGATTTATGTATTTGTTTTCGAAAGCTGAAAGATCTGAGTATTATAAATGTGCACACTGCAACAAAGATGTCCTGAAAAGGGAAGCTGTGAGCTGCCAGTATTGCAAAGGATTTTACCACAAAAGGCATGCCAGAAAGTCTGCTGGGGCAGTGGTTGCTCGGTGTAAATATACATGCCACCGATGCCAGAATGGATTGCATCCTAAGATTGACACAAAAAGAAGGAAAGTTGAAACAAAAGGAGCGATAGTAAAGCCACAGAAATGTAAACCGAAAGGAGGGAAAGTACAGTCACAAAAATGTACAAATTCTCAAACAGGTCGCAGATCAATGCGTTTGAAAAACAAAAAAAAAGCTTTGGCTGGAGGACGACAAGTAAGATTGAAAAATAGCAAAACAGTTCCAGCAATTGTACCTCTACGTCGTTCTCCTAGAAAAACTAAAAGCTTACCAGTGCAAAATAAAAAACTTAGCAAATGCAAGAAAGGGAAAAAAGGCAAATCCAATAAGGGCACTTATAAGGAACCAAATACAGTTACTTGGCAGAAGAAGAGAACGCAAGTCTATCACAGTTACTGGCTTAATGGTCTGCTATTGTCTAGAAAGCCAAGTGATGAACGTGTTACGCATTTTTGGGATAAGAAACTCCTTGTGCATTCAGAATGTGCGTCGACCATTCTTGATCAACCCAAATGCCACCTTTGTTGTGAAGCAAGATATACGTCTTCTTTAAATTATATTTCTTGTGAAATCTGTGGAGTGTGGTTTCACGGTGAGGCTTTTGGACTGAATTCAGAGAACATTGGTAAGCTTATTGGATTTAAGTGCCACATGTGTCGTGAAGGGAACCCTCCTGTCTGCCCCCATTTGGAAGATGTGAAAACTGATGTCCCCCAATTGGCTGAAGTTCAAATTGATGGTACCGTTGATTGTTCTGAGGAAGTACCCAACTCTGTCCCACCTTTAAGTGAGATCACATGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031010 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

1672

Amino Acids

186.71

Weight (kDa)

8.26

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 5 - 50 5.2e-12 PTM/DIR17-like, Tudor domain
DDT PF02791 474 - 528 3.9e-16 DDT domain
PHD PF00628 670 - 711 2e-07 PHD-finger
Chromo_PTM PF24294 1247 - 1319 1.3e-25 Membrane-bound transcription factor PTM, chromo domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 4074, 4548
AasI GACNNNNNNGTC 1 cut(s) 2827
Acc36I ACCTGC 1 cut(s) 1783
Acc65I GGTACC 3 cut(s) 1949, 2238, 4949
AccB1I GGYRCC 4 cut(s) 1949, 2238, 3512, 4949
AccB7I CCANNNNNTGG 1 cut(s) 1992
AccI GTMKAC 2 cut(s) 3962, 4700
AccII CGCG 1 cut(s) 2824
AclI AACGTT 1 cut(s) 936
AclWI GGATC 5 cut(s) 1268, 1693, 2198, 2703, 3383
AcoI YGGCCR 5 cut(s) 1506, 1670, 2212, 2788, 2927
AcuI CTGAAG 6 cut(s) 2316, 2565, 2652, 2727, 3798, 4953
AflIII ACRYGT 6 cut(s) 2459, 2662, 2822, 3307, 4648, 4860
AhdI GACNNNNNGTC 1 cut(s) 3721
AhlI ACTAGT 1 cut(s) 3623
AjnI CCWGG 2 cut(s) 2433, 3596
AjuI GAANNNNNNNTTGG 4 cut(s) 342, 374, 2524, 2556
AleI CACNNNNGTG 1 cut(s) 1516
AloI GAACNNNNNNTCC 2 cut(s) 3367, 3399
Alw21I GWGCWC 6 cut(s) 36, 1237, 2959, 3286, 3776, 4084
Alw26I GTCTC 7 cut(s) 151, 1094, 1208, 1334, 1374, 1643, 2471
Alw44I GTGCAC 3 cut(s) 2955, 3282, 4080
AlwI GGATC 5 cut(s) 1268, 1693, 2198, 2703, 3383
AlwNI CAGNNNCTG 2 cut(s) 2516, 4605
Ama87I CYCGRG 1 cut(s) 4017
ApaI GGGCCC 1 cut(s) 3170
ApaLI GTGCAC 3 cut(s) 2955, 3282, 4080
AseI ATTAAT 2 cut(s) 912, 1851
Asp700I GAANNNNTTC 2 cut(s) 277, 921
Asp718I GGTACC 3 cut(s) 1949, 2238, 4949
AspA2I CCTAGG 1 cut(s) 1126
AspS9I GGNCC 5 cut(s) 205, 2437, 3166, 3167, 4014
AsuC2I CCSGG 4 cut(s) 204, 1722, 4018, 4019
AsuHPI GGTGA 8 cut(s) 46, 860, 977, 1619, 1897, 2123, 2637, 4814
AsuII TTCGAA 1 cut(s) 4049
AvaI CYCGRG 1 cut(s) 4017
AvaII GGWCC 1 cut(s) 2437
AvrII CCTAGG 1 cut(s) 1126
BaeGI GKGCMC 6 cut(s) 2741, 2959, 3170, 3286, 4084, 4544
BalI TGGCCA 3 cut(s) 1672, 2790, 2929
BanI GGYRCC 4 cut(s) 1949, 2238, 3512, 4949
BanII GRGCYC 3 cut(s) 36, 3170, 3335
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 5 cut(s) 2322, 2640, 2706, 2900, 4746
Bbv12I GWGCWC 6 cut(s) 36, 1237, 2959, 3286, 3776, 4084
BbvCI CCTCAGC 2 cut(s) 171, 2625
BceAI ACGGC 4 cut(s) 239, 1149, 1820, 2572
BciT130I CCWGG 2 cut(s) 2435, 3598
BciVI GTATCC 1 cut(s) 751
BclI TGATCA 1 cut(s) 4711
BcnI CCSGG 4 cut(s) 204, 1722, 4018, 4019
BcoDI GTCTC 7 cut(s) 151, 1094, 1208, 1334, 1374, 1643, 2471
BcuI ACTAGT 1 cut(s) 3623
BfmI CTRYAG 3 cut(s) 1209, 1290, 3149
BfuAI ACCTGC 1 cut(s) 1783
BfuI GTATCC 1 cut(s) 751
BglII AGATCT 1 cut(s) 4061
BlnI CCTAGG 1 cut(s) 1126
BlpI GCTNAGC 2 cut(s) 1872, 3334
Bme1390I CCNGG 6 cut(s) 204, 1722, 2435, 3598, 4018, 4019
Bme18I GGWCC 1 cut(s) 2437
BmeRI GACNNNNNGTC 1 cut(s) 3721
BmeT110I CYCGRG 1 cut(s) 4017
BmgT120I GGNCC 5 cut(s) 205, 2437, 3166, 3167, 4014
BmrFI CCNGG 6 cut(s) 204, 1722, 2435, 3598, 4018, 4019
BmrI ACTGGG 4 cut(s) 465, 1347, 2386, 3551
BmsI GCATC 7 cut(s) 616, 2418, 3040, 3230, 3928, 4202, 4237
BmuI ACTGGG 4 cut(s) 465, 1347, 2386, 3551
BpiI GAAGAC 5 cut(s) 2322, 2640, 2706, 2900, 4746
BplI GAGNNNNNCTC 2 cut(s) 1219, 1251
BpmI CTGGAG 2 cut(s) 1917, 4413
Bpu10I CCTNAGC 3 cut(s) 171, 2324, 2625
Bpu1102I GCTNAGC 2 cut(s) 1872, 3334
Bpu14I TTCGAA 1 cut(s) 4049
BpuEI CTTGAG 1 cut(s) 4010
BpuMI CCSGG 4 cut(s) 204, 1722, 4018, 4019
BsaAI YACGTR 3 cut(s) 1668, 3190, 3362
BsaBI GATNNNNATC 2 cut(s) 480, 723
BsaI GGTCTC 1 cut(s) 151
BsaWI WCCGGW 2 cut(s) 56, 1893
BsaXI ACNNNNNCTCC 6 cut(s) 3436, 3466, 4263, 4293, 4299, 4329
Bse118I RCCGGY 2 cut(s) 2142, 2214
Bse3DI GCAATG 2 cut(s) 2710, 3228
Bse8I GATNNNNATC 2 cut(s) 480, 723
BseBI CCWGG 2 cut(s) 2435, 3598
BseJI GATNNNNATC 2 cut(s) 480, 723
BseMI GCAATG 2 cut(s) 2710, 3228
BseRI GAGGAG 7 cut(s) 140, 761, 850, 1189, 1240, 1648, 2828
BseSI GKGCMC 6 cut(s) 2741, 2959, 3170, 3286, 4084, 4544
BseYI CCCAGC 3 cut(s) 521, 3524, 4172
BsgI GTGCAG 3 cut(s) 978, 2205, 3648
Bsh1236I CGCG 1 cut(s) 2824
BshNI GGYRCC 4 cut(s) 1949, 2238, 3512, 4949
BsiHKAI GWGCWC 6 cut(s) 36, 1237, 2959, 3286, 3776, 4084
BsiHKCI CYCGRG 1 cut(s) 4017
BsiWI CGTACG 1 cut(s) 72
BslFI GGGAC 6 cut(s) 1467, 1725, 2393, 3168, 4904, 4970
BsmAI GTCTC 7 cut(s) 151, 1094, 1208, 1334, 1374, 1643, 2471
BsmFI GGGAC 6 cut(s) 1467, 1725, 2393, 3168, 4904, 4970
BsmI GAATGC 3 cut(s) 523, 2012, 4684
Bso31I GGTCTC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 4017
Bsp119I TTCGAA 1 cut(s) 4049
Bsp120I GGGCCC 1 cut(s) 3166
Bsp1407I TGTACA 2 cut(s) 3530, 4331
Bsp1720I GCTNAGC 2 cut(s) 1872, 3334
Bsp19I CCATGG 3 cut(s) 694, 1702, 3170
BspFNI CGCG 1 cut(s) 2824
BspHI TCATGA 2 cut(s) 3027, 3139
BspMAI CTGCAG 2 cut(s) 1294, 3153
BspMI ACCTGC 1 cut(s) 1783
BspPI GGATC 5 cut(s) 1268, 1693, 2198, 2703, 3383
BspQI GCTCTTC 1 cut(s) 3814
BspT104I TTCGAA 1 cut(s) 4049
BspT107I GGYRCC 4 cut(s) 1949, 2238, 3512, 4949
BspTNI GGTCTC 1 cut(s) 151
BsrDI GCAATG 2 cut(s) 2710, 3228
BsrFI RCCGGY 2 cut(s) 2142, 2214
BsrGI TGTACA 2 cut(s) 3530, 4331
BssAI RCCGGY 2 cut(s) 2142, 2214
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 6 cut(s) 157, 694, 1126, 1702, 3170, 3507
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 2435, 3598
Bst6I CTCTTC 9 cut(s) 701, 1291, 1332, 2644, 2862, 3814, 3836, 3933, 4574
BstAPI GCANNNNNTGC 3 cut(s) 1298, 3771, 4184
BstAUI TGTACA 2 cut(s) 3530, 4331
BstBAI YACGTR 3 cut(s) 1668, 3190, 3362
BstBI TTCGAA 1 cut(s) 4049
BstC8I GCNNGC 8 cut(s) 1102, 1596, 2216, 2372, 2553, 3603, 3639, 4158
BstDSI CCRYGG 5 cut(s) 43, 694, 1702, 3170, 3327
BstEII GGTNACC 1 cut(s) 688
BstENI CCTNNNNNAGG 3 cut(s) 185, 446, 3215
BstFNI CGCG 1 cut(s) 2824
BstMAI GTCTC 7 cut(s) 151, 1094, 1208, 1334, 1374, 1643, 2471
BstNI CCWGG 2 cut(s) 2435, 3598
BstNSI RCATGY 7 cut(s) 2463, 2666, 3311, 4160, 4206, 4864, 5010
BstPI GGTNACC 1 cut(s) 688
BstSCI CCNGG 6 cut(s) 202, 1720, 2433, 3596, 4016, 4017
BstSFI CTRYAG 3 cut(s) 1209, 1290, 3149
BstSLI GKGCMC 6 cut(s) 2741, 2959, 3170, 3286, 4084, 4544
BstSNI TACGTA 1 cut(s) 3362
BstUI CGCG 1 cut(s) 2824
BstV2I GAAGAC 5 cut(s) 2322, 2640, 2706, 2900, 4746
BstX2I RGATCY 2 cut(s) 2695, 4061
BstXI CCANNNNNNTGG 2 cut(s) 2569, 3427
BstYI RGATCY 2 cut(s) 2695, 4061
BsuI GTATCC 1 cut(s) 751
BtgI CCRYGG 5 cut(s) 43, 694, 1702, 3170, 3327
BtsI GCAGTG 3 cut(s) 1299, 4084, 4185
BveI ACCTGC 1 cut(s) 1783
Cac8I GCNNGC 8 cut(s) 1102, 1596, 2216, 2372, 2553, 3603, 3639, 4158
CaiI CAGNNNCTG 2 cut(s) 2516, 4605
CciI TCATGA 2 cut(s) 3027, 3139
Cfr10I RCCGGY 2 cut(s) 2142, 2214
Cfr13I GGNCC 5 cut(s) 205, 2437, 3166, 3167, 4014
Cfr9I CCCGGG 1 cut(s) 4017
CseI GACGC 3 cut(s) 2830, 3263, 4686
CspCI CAANNNNNGTGG 2 cut(s) 4715, 4750
DraI TTTAAA 5 cut(s) 1401, 2227, 2904, 3411, 4761
DrdI GACNNNNNNGTC 1 cut(s) 2827
DriI GACNNNNNGTC 1 cut(s) 3721
DseDI GACNNNNNNGTC 1 cut(s) 2827
EaeI YGGCCR 5 cut(s) 1506, 1670, 2212, 2788, 2927
Eam1104I CTCTTC 9 cut(s) 701, 1291, 1332, 2644, 2862, 3814, 3836, 3933, 4574
Eam1105I GACNNNNNGTC 1 cut(s) 3721
EarI CTCTTC 9 cut(s) 701, 1291, 1332, 2644, 2862, 3814, 3836, 3933, 4574
Ecl136II GAGCTC 1 cut(s) 34
Eco105I TACGTA 1 cut(s) 3362
Eco130I CCWWGG 6 cut(s) 157, 694, 1126, 1702, 3170, 3507
Eco147I AGGCCT 1 cut(s) 3617
Eco24I GRGCYC 3 cut(s) 36, 3170, 3335
Eco31I GGTCTC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 2437
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 6 cut(s) 2316, 2565, 2652, 2727, 3798, 4953
Eco88I CYCGRG 1 cut(s) 4017
Eco91I GGTNACC 1 cut(s) 688
EcoICRI GAGCTC 1 cut(s) 34
EcoNI CCTNNNNNAGG 3 cut(s) 185, 446, 3215
EcoO109I RGGNCCY 1 cut(s) 4014
EcoO65I GGTNACC 1 cut(s) 688
EcoRI GAATTC 4 cut(s) 1413, 3562, 3691, 4819
EcoRII CCWGG 2 cut(s) 2433, 3596
EcoT14I CCWWGG 6 cut(s) 157, 694, 1126, 1702, 3170, 3507
EcoT22I ATGCAT 1 cut(s) 1151
EcoT38I GRGCYC 3 cut(s) 36, 3170, 3335
ErhI CCWWGG 6 cut(s) 157, 694, 1126, 1702, 3170, 3507
FalI AAGNNNNNCTT 4 cut(s) 3002, 3034, 3090, 3122
FaqI GGGAC 6 cut(s) 1467, 1725, 2393, 3168, 4904, 4970
FbaI TGATCA 1 cut(s) 4711
FblI GTMKAC 2 cut(s) 3962, 4700
FriOI GRGCYC 3 cut(s) 36, 3170, 3335
GsaI CCCAGC 3 cut(s) 525, 3528, 4176
GsuI CTGGAG 2 cut(s) 1917, 4413
HgaI GACGC 3 cut(s) 2830, 3263, 4686
HincII GTYRAC 3 cut(s) 178, 2820, 4701
HindII GTYRAC 3 cut(s) 178, 2820, 4701
HindIII AAGCTT 3 cut(s) 4383, 4474, 4838
HphI GGTGA 8 cut(s) 46, 860, 977, 1619, 1897, 2123, 2637, 4814
Hpy99I CGWCG 2 cut(s) 4455, 4702
HpyCH4IV ACGT 9 cut(s) 936, 1517, 1667, 3189, 3361, 3710, 4450, 4648, 4751
HpySE526I ACGT 9 cut(s) 936, 1517, 1667, 3189, 3361, 3710, 4450, 4648, 4751
KpnI GGTACC 3 cut(s) 1953, 2242, 4953
KroI GCCGGC 1 cut(s) 2214
KroNI GCCGGC 1 cut(s) 2216
Ksp22I TGATCA 1 cut(s) 4711
LguI GCTCTTC 1 cut(s) 3814
LmnI GCTCC 6 cut(s) 31, 159, 1936, 2402, 3001, 4271
LweI GCATC 7 cut(s) 616, 2418, 3040, 3230, 3928, 4202, 4237
MaeII ACGT 9 cut(s) 936, 1517, 1667, 3189, 3361, 3710, 4450, 4648, 4751
MfeI CAATTG 5 cut(s) 1642, 3080, 4437, 4925, 5011
MflI RGATCY 2 cut(s) 2695, 4061
MlsI TGGCCA 3 cut(s) 1672, 2790, 2929
MluI ACGCGT 1 cut(s) 2822
MluNI TGGCCA 3 cut(s) 1672, 2790, 2929
MlyI GAGTC 7 cut(s) 1489, 1519, 1645, 2279, 2630, 3404, 3731
MmeI TCCRAC 6 cut(s) 1473, 2062, 3240, 3423, 3458, 3693
Mox20I TGGCCA 3 cut(s) 1672, 2790, 2929
Mph1103I ATGCAT 1 cut(s) 1151
MroNI GCCGGC 1 cut(s) 2214
MroXI GAANNNNTTC 2 cut(s) 277, 921
MscI TGGCCA 3 cut(s) 1672, 2790, 2929
MslI CAYNNNNRTG 8 cut(s) 1109, 1516, 1551, 2567, 3032, 3108, 4291, 4327
Msp20I TGGCCA 3 cut(s) 1672, 2790, 2929
MspA1I CMGCKG 4 cut(s) 962, 1871, 2555, 3120
MspR9I CCNGG 6 cut(s) 204, 1722, 2435, 3598, 4018, 4019
MunI CAATTG 5 cut(s) 1642, 3080, 4437, 4925, 5011
Mva1269I GAATGC 3 cut(s) 523, 2012, 4684
MvaI CCWGG 2 cut(s) 2435, 3598
MvnI CGCG 1 cut(s) 2824
NaeI GCCGGC 1 cut(s) 2216
NciI CCSGG 4 cut(s) 204, 1722, 4018, 4019
NcoI CCATGG 3 cut(s) 694, 1702, 3170
NgoMIV GCCGGC 1 cut(s) 2214
NmeAIII GCCGAG 1 cut(s) 2836
NmuCI GTSAC 9 cut(s) 551, 767, 1607, 2111, 2172, 2512, 2518, 3349, 4320
NsiI ATGCAT 1 cut(s) 1151
NspI RCATGY 7 cut(s) 2463, 2666, 3311, 4160, 4206, 4864, 5010
NspV TTCGAA 1 cut(s) 4049
OliI CACNNNNGTG 1 cut(s) 1516
PaeI GCATGC 1 cut(s) 4160
PagI TCATGA 2 cut(s) 3027, 3139
PceI AGGCCT 1 cut(s) 3617
PciI ACATGT 4 cut(s) 2459, 2662, 3307, 4860
PciSI GCTCTTC 1 cut(s) 3814
PctI GAATGC 3 cut(s) 523, 2012, 4684
PdiI GCCGGC 1 cut(s) 2216
PdmI GAANNNNTTC 2 cut(s) 277, 921
Pfl23II CGTACG 1 cut(s) 72
PflMI CCANNNNNTGG 1 cut(s) 1992
PleI GAGTC 7 cut(s) 1488, 1519, 1644, 2278, 2630, 3403, 3730
PpsI GAGTC 7 cut(s) 1488, 1519, 1644, 2278, 2630, 3403, 3730
Ppu21I YACGTR 3 cut(s) 1668, 3190, 3362
PscI ACATGT 4 cut(s) 2459, 2662, 3307, 4860
PshBI ATTAAT 2 cut(s) 912, 1851
PsiI TTATAA 2 cut(s) 4074, 4548
Psp124BI GAGCTC 1 cut(s) 36
Psp1406I AACGTT 1 cut(s) 936
Psp6I CCWGG 2 cut(s) 2433, 3596
PspEI GGTNACC 1 cut(s) 688
PspFI CCCAGC 3 cut(s) 521, 3524, 4172
PspGI CCWGG 2 cut(s) 2433, 3596
PspLI CGTACG 1 cut(s) 72
PspOMI GGGCCC 1 cut(s) 3166
PspPI GGNCC 5 cut(s) 205, 2437, 3166, 3167, 4014
PstI CTGCAG 2 cut(s) 1294, 3153
PstNI CAGNNNCTG 2 cut(s) 2516, 4605
PsuI RGATCY 2 cut(s) 2695, 4061
PvuII CAGCTG 4 cut(s) 962, 1871, 2555, 3120
RseI CAYNNNNRTG 8 cut(s) 1109, 1516, 1551, 2567, 3032, 3108, 4291, 4327
SacI GAGCTC 1 cut(s) 36
SalI GTCGAC 1 cut(s) 4699
SapI GCTCTTC 1 cut(s) 3814
Sau96I GGNCC 5 cut(s) 205, 2437, 3166, 3167, 4014
SchI GAGTC 7 cut(s) 1489, 1519, 1645, 2279, 2630, 3404, 3731
ScrFI CCNGG 6 cut(s) 204, 1722, 2435, 3598, 4018, 4019
SfaNI GCATC 7 cut(s) 616, 2418, 3040, 3230, 3928, 4202, 4237
SfcI CTRYAG 3 cut(s) 1209, 1290, 3149
SfuI TTCGAA 1 cut(s) 4049
SinI GGWCC 1 cut(s) 2437
SmaI CCCGGG 1 cut(s) 4019
SmiI ATTTAAAT 1 cut(s) 1401
SmiMI CAYNNNNRTG 8 cut(s) 1109, 1516, 1551, 2567, 3032, 3108, 4291, 4327
SmlI CTYRAG 1 cut(s) 3989
SmoI CTYRAG 1 cut(s) 3989
SnaBI TACGTA 1 cut(s) 3362
SpeI ACTAGT 1 cut(s) 3623
SphI GCATGC 1 cut(s) 4160
SseBI AGGCCT 1 cut(s) 3617
SspI AATATT 2 cut(s) 2935, 3245
SstI GAGCTC 1 cut(s) 36
StuI AGGCCT 1 cut(s) 3617
StyD4I CCNGG 6 cut(s) 202, 1720, 2433, 3596, 4016, 4017
StyI CCWWGG 6 cut(s) 157, 694, 1126, 1702, 3170, 3507
SwaI ATTTAAAT 1 cut(s) 1401
TaiI ACGT 9 cut(s) 939, 1520, 1670, 3192, 3364, 3713, 4453, 4651, 4754
TatI WGTACW 3 cut(s) 3530, 4315, 4331
TauI GCSGC 5 cut(s) 80, 194, 197, 229, 1511
TseFI GTSAC 9 cut(s) 551, 767, 1607, 2111, 2172, 2512, 2518, 3349, 4320
Tsp45I GTSAC 9 cut(s) 551, 767, 1607, 2111, 2172, 2512, 2518, 3349, 4320
TspMI CCCGGG 1 cut(s) 4017
Van91I CCANNNNNTGG 1 cut(s) 1992
VneI GTGCAC 3 cut(s) 2955, 3282, 4080
VpaK11BI GGWCC 1 cut(s) 2437
VspI ATTAAT 2 cut(s) 912, 1851
XagI CCTNNNNNAGG 3 cut(s) 185, 446, 3215
XbaI TCTAGA 3 cut(s) 823, 1405, 4628
XceI RCATGY 7 cut(s) 2463, 2666, 3311, 4160, 4206, 4864, 5010
XmaI CCCGGG 1 cut(s) 4017
XmaJI CCTAGG 1 cut(s) 1126
XmiI GTMKAC 2 cut(s) 3962, 4700
XmnI GAANNNNTTC 2 cut(s) 277, 921
Zsp2I ATGCAT 1 cut(s) 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.