RLG00000034759

DDT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003576
Physical Location & Seq
Reverse (-)
53901501 .. 53913582
12082 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034759

Sequence Viewer

Length: 4713 bp
ATGGATTTCGTCGGGAGAAGCGTGAGGAAAGAGTTGAAAGGCGTCGTCGGAACTGTGAAATCCTACTCCGCCTCCTCCGGCTTCTTCCAGGTCCTCTTTGAAGACGGAAATTCCGAACAATTCGACTCCGCCCAGCTCTCTCTCCTCCTCCTCGCCGACCCCGCCCCCGCTCGAAAGCCCAAGAAACGACGCCGTACAGGTAATTCTGATCCCAATTACAGGGGGGAGGATGAGCATGCTAGTAGTAATTCGAGTCCAGAAAAGGAGCAGGGGATTGATTTGAATGCGGGGTTTAATTTTAGCTTAAATGATGCTGCTGACCTGAATGTTGGTGAGGAGAGAGAGTGTATTGATTTGAATTTGGATGCCAGCGGTTGTGATTCTGTTGATAATTTCGATGGGCCTAGTTTGGGCCAAGGCACCAAGCGGAGGGGTTGCGATTTCGATTTGAATTTGGAGGTTGCTGAGGAGGGGGACAGTGAAGACAAGTTTAAAGTTAGTCCCAAGTTTGAGAGGATTGAAGAGAGTCGAAGCAGTGGAGATGCCGAAGATGGAAATGTTGCTGAGGATGGGAATGTTAGTGAGACCCGGAAGCAAGTGTGTATTGATATTAATCAAGAAGTTCCCTTGAATGGCATTGAGTGTGCTGCTGTTGGGGAAGGACTCAGTAATGAGAACCGGTGGTCCAGTGGAGATATGAAGGTCGAATCTTCTCTTGGGGATTTGAATGCTAGTGCTGTTAAGGATAATGGTACTGTGGAAGATGGTCCTTCGGAAGCTGCTACACCAGTGACTCATGGGCACCTAGGCGATTCCGCAAGTCCAAGCATTCAAAAAAGTAGCCGAAGGAAGAGAAGAAAGCTAATGGATAATTTGATATCTAATACTACAGAGACAGTTTTGAGGAGAAGTTCTCGCAGAGGATCTGCTCAAAATCATGTTTCCGTTGTATCATCTGCTGTTAGTAATCCTGTCTCCTCTTCTGCAGCTACTGCAGTAACAGAGGACGTACCGGTGATTTCTGGCAGTGAAGAAGCCGATAAGCCTAGTGTTGCCACTCAGAAGCTCAAATTACCTCCTTCGTCACAACATTTGAATTTAGAGGGCATTCCCGTACTTGACCTTTTTTCTATTTATGCGTGTTTGAGATCATTTAGTACAATATTGTTTCTGAGCCCCTTCAATTTGGAGGATTTTGTGAGAGCACTGCAATGCAACTCTCCTAGTTCGTTATTTGATTCTGTTCATGTTTCTATTTTGCAAACGCTAAGAAAGCATTTGGAGTCCCTTTCAAATGAAGGTTCCGAATCTGCTTCTGATTGTTTAAGGAGTCTTAATTGGGATTTCCTGGACTTAATTACGTGGCCAGTTTTCATGGTTGAGTACTTTCTGATTCATTGTTCAGGACTGAAACCTGGATTTGACCTCGGTCACTTTAAGCTATTAAAAAGTGACTACTACAGTCAGCCTGCTTCTCTAAAGGTTGAGATTCTTCGCTGTCTGTGTGATGATTTGATAGAAGGGGAAGCCATAAAGTCGGAGATTAATAGAAGGTGTTCGACATCTGAACATGACATGGGTTTTGATCGTGATGTAAACTTTGATGTCTGCAAGAAAAGGAAGGCTTCTGCGCAAATTGCTGGAAGCTCCAGTTTGAATGATGAAAATGTTGATGAAACCCCTGACTGGAATAGTGATGAATGTTGCCTCTGTAAGATGGAAGGAAACTTAATATGCTGTGATGGCTGTCCAGCAGCTTACCATTCAAGATGTGTAGGAGTTGTCCATGATCTTTTGCCGGAGGGTGATTGGTATTGCCCTGAATGTATGATTGATAGGCATAAACCTTGGATGAAACTCCGCAAGTCACTGCGAGGTGCAGAGTTATTAGGAATTGATCCTCATGGTCGGCTATATTTTAAAAGCTGCGGCTACCTGTTGGTATCTGGTTTTTGTGATGATGAATCTGCATTTAATTACTATCACAGAGATGATCTAAACAAGATTATTGAAGTGCTAAGGTCTTCAGAATTTTCCTATGGTGGGATATTATTGGGAATCTATAAGCACTGGGACATTCCTACTACCTTTAATGGAGCAATTAGTAGCAAGCCCCTGGACCAATTGGAATTTTCAGAAACAGGTGATGCTAAAAATGAGACTCATGAGGATAGAAAACTGCAAGGGAAGTTTTGTAATCTCGTTTCTGATGTTTCAAATTCTGTTCAAGTGCTGAGAAGGACTGTCATTCAGGATGAGTCAAATAATCTTGCTGATATTTCAAATCAATCAGATTTGGTCGGAAAACTTCATCCTGAAGACTGTTCTTTGACATCTACTTGCTTGGATGTCAGACAAGAGAGCAACGGTTCTATTGATCTTGGAAAAATTTCATCTGCTATAACCACTAGAAAAGAGGGCACTTCAGAAGGGGATTGTGGAATTGATTACATGAACTACTACAGTTTTGGCCAAATTGCTTCATCTGTTGCAGAGGAGTTGACTAAATCATCAGAAAAGAACAAGGAAGGTGCACTAAATACAGTAGATGAAATAATATCTGCGCAGATGAAGACCATTATAAAAAAATCTTCCAAGTTTTCCTGGCCAAATATTGAGAACTTAAATATAGAGGTGCAGAAAGAGAAATGTGGGTGGTGCTTTTCTTGCAAATTTCCTGCTGATGATAGGGATTGCTTGCTTATCATGAGTAAACTGCCTTTACCGGATGTTTCCAAGACTGATGTAGTTGGACTTCAATTGAAAAAAATTCCCAAAGATCATCTTAATGATGTCAGCTGTCAAATTTTGTCCATTCATGATCGCCTGCTTGGGCTTCTGTTGGGTCCATGGTTGAACCCCCATCATACAGACTGCTGGCGGAATAGTCTTCTTAATGCATGTGATCTTGCCTCTGTTAAGCATTTACTGCTCCTTCTAGTGGAAAATTTGCATCATCGTGCATTGTCCGCAGATTGGTTGAAACATGTGGACTCTGTTGTTACCATGGGTTCAGCTTCTCATGTTGTGACTTCATTACGTGCATACTCAAAGAACATGAATAGCAGAAAGAGGCCCAAGTTTTCTGATATTGATTCGAATCCATCTTCACATGCCGGCAGTGGATTGGGAATGTTTTGGTGGAGGGGTGGCAGGCTTTCTCGTCAGGTGTTTGGTTGGAAGATTTTGCCTTGCTCCTTGACTTCTAAGGCTGCCAGACAAGGTGGGTGCACAAAAATAATGGGTATACTGTATCCTGAGAATTCAGAATATGCAAAGAGAAGCAAATATATTGCCTGGCGAGCTACTGTTGAGATGTCAACTAGTGCAGAACAGCTGGCTTTGCAGGTTAGAGAGCTTTATTCAAACATTAAGTGGGATGATATTGAGAACACACACCTGCTGCCTACATTGGACAAGGAATCTACAAAATCAATCAAGCTTTTCAGGAAAGTTATTGTCCGCAGGAAGTGCTCAGAAAAGGGAGTGGTTAAGTATCTTCTTGATTTTGGCAAGAGAAGAGCAATCCCCGACATTGTCAGGAAACATGGTTCTGTGCTTGAAGAACCATCTAATGAGAGGAAAAAGTATTGGCTTGAAGAATCATATCTTCCTCTGCATCTTTTGAAAAATTTTGAGGAGAGAAGAATTGCCCGGAAGTCTAGTCATGGGAAGTCTGGTAAAGTTCTTGCGGTTGGTAGAGTAATGCGGCCCCCGGATGAAAAGGGATTTGCTTATTTGTTTTCCAAAGCAGAAAGATCAGAGTATTATAAGTGTGGACACTGCCACAAAGATGTCCTGATAAGGGAAGCTGTGAGTTGTCAATTGTGCAGAGGATTTTTCCACAAAAGGCATGCGAAGAAGTCTGCCGGGGCCATTGTTTCCGAGTGTACGTATACATGTCACCGATGCCAGAATGCGAAGATTGATACAAAAAGAGGGAAAGCTGATAAAAAGAGAGGAAAAGTTGGTATGAAAAGAGGGAAAGTTGAAACAAAAATAGAGAAAGTACAGTCACAGAAATGTAAAAATTCTCAAACTGATCGTAGATCACTGCGTTTGAGAAGCAAAAGAAAAGCTTTAGCTGGAGGAAGACAGGTACAATTGAAAAATAGCAAAAAGGTTCCTGTAAGTCTACCTTTACGCCGCTCTCCAAGGAAAGCTAAATGCTTGACGTTGCAAAATAAAAAGCATAGCAAACGCAAGAAAGGGAAACAAAGCAAATCCAAGAAGCGGACGTATAAGAAACCAAAGACAGGGACCTTGTGTCAGAAGAAGAGAACACAAGTTTATCGCAGCTACTGGCTAAATGGTCTGCAGTTGTCTAGAAAGCCAAATGATAAACGTGTTACGCTTTTTAGGGAGAAAAAACTACTTGCTCACTCTGGCTGTTCTTCTACCATTCTCAGTCAACTCAAATGCCAGCTCTGTTGTGAAGCAGAATATGCATCTACTTTAGATTATATCGGGTGTGAACTATGTGGAGAGTGGTTTCATGGAGAGGCTTTTGGGCTGGATTCAGAGAACATTGATAAGCTTATTGGATTCAGGTGCCATGTGTGTCGTAAAACAGAACCTCCTGTCTGCCCCCATCTGGTAGTTGTGAAAACTGATGTGTCCCAATTGGCTGAAGCTCAAACTGATGGTTCTGTTGATTGTTCAGAGGAAGTACCTAATGCAGTCCCGACTTTGAGTGAGATTACATGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031010 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

1571

Amino Acids

175.23

Weight (kDa)

8.55

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 5 - 47 2e-06 PTM/DIR17-like, Tudor domain
DDT PF02791 372 - 426 1e-17 DDT domain
WHIM1 PF15612 481 - 516 3.4e-06 WSTF, HB1, Itc1p, MBD9 motif 1
PHD PF00628 568 - 609 2.2e-06 PHD-finger
Chromo_PTM PF24294 1147 - 1219 5.9e-27 Membrane-bound transcription factor PTM, chromo domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2582, 3771
AarI CACCTGC 1 cut(s) 3408
Acc16I TGCGCA 2 cut(s) 1632, 2565
Acc36I ACCTGC 2 cut(s) 3337, 3408
AccB1I GGYRCC 3 cut(s) 419, 801, 4551
AccBSI CCGCTC 2 cut(s) 170, 4149
AccI GTMKAC 3 cut(s) 3247, 3896, 4135
AclWI GGATC 3 cut(s) 203, 931, 1892
AcoI YGGCCR 3 cut(s) 1364, 2470, 2606
AcuI CTGAAG 4 cut(s) 2010, 2337, 2409, 4650
AcyI GRCGYC 2 cut(s) 42, 190
AflIII ACRYGT 3 cut(s) 2986, 3899, 4345
AgeI ACCGGT 2 cut(s) 678, 1012
AhdI GACNNNNNGTC 1 cut(s) 4266
AhlI ACTAGT 1 cut(s) 3323
AjnI CCWGG 6 cut(s) 87, 1347, 1414, 2115, 2603, 3296
AjuI GAANNNNNNNTTGG 2 cut(s) 699, 731
AloI GAACNNNNNNTCC 4 cut(s) 668, 700, 3535, 3567
Alw21I GWGCWC 4 cut(s) 1207, 2536, 3233, 3476
Alw26I GTCTC 4 cut(s) 578, 887, 979, 2153
Alw44I GTGCAC 2 cut(s) 2532, 3229
AlwI GGATC 3 cut(s) 203, 931, 1892
AlwNI CAGNNNCTG 2 cut(s) 992, 4302
AoxI GGCC 8 cut(s) 401, 412, 1364, 2470, 2606, 3074, 3710, 3873
ApaLI GTGCAC 2 cut(s) 2532, 3229
ApeKI GCWGC 9 cut(s) 314, 647, 779, 986, 1754, 1926, 3212, 3403, 4296
ArsI GACNNNNNNTTYG 2 cut(s) 1565, 1597
AseI ATTAAT 2 cut(s) 612, 1545
AsiGI ACCGGT 2 cut(s) 678, 1012
Asp700I GAANNNNTTC 2 cut(s) 1555, 2389
AspA2I CCTAGG 1 cut(s) 805
AspLEI GCGC 2 cut(s) 1633, 2566
AsuC2I CCSGG 4 cut(s) 589, 3655, 3716, 3871
AsuHPI GGTGA 5 cut(s) 344, 1027, 1817, 2156, 3896
AsuII TTCGAA 1 cut(s) 3098
AvaII GGWCC 6 cut(s) 91, 684, 767, 2119, 2846, 4260
AvrII CCTAGG 1 cut(s) 805
BaeGI GKGCMC 4 cut(s) 804, 2423, 2536, 3233
BalI TGGCCA 3 cut(s) 1366, 2472, 2608
BanI GGYRCC 3 cut(s) 419, 801, 4551
BanII GRGCYC 1 cut(s) 1178
BarI GAAGNNNNNNTAC 2 cut(s) 2739, 2771
BbsI GAAGAC 7 cut(s) 108, 489, 2016, 2325, 2579, 2882, 4099
Bbv12I GWGCWC 4 cut(s) 1207, 2536, 3233, 3476
BbvCI CCTCAGC 2 cut(s) 465, 564
BbvI GCAGC 9 cut(s) 301, 634, 766, 998, 1766, 1913, 3199, 3390, 4308
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 6 cut(s) 89, 1349, 1416, 2117, 2605, 3298
BciVI GTATCC 1 cut(s) 3264
BcnI CCSGG 4 cut(s) 589, 3655, 3716, 3871
BcoDI GTCTC 4 cut(s) 578, 887, 979, 2153
BcuI ACTAGT 1 cut(s) 3323
BfmI CTRYAG 6 cut(s) 888, 984, 993, 1459, 2461, 4316
BfuAI ACCTGC 2 cut(s) 3337, 3408
BfuI GTATCC 1 cut(s) 3264
BlnI CCTAGG 1 cut(s) 805
BmcAI AGTACT 1 cut(s) 1385
Bme18I GGWCC 6 cut(s) 91, 684, 767, 2119, 2846, 4260
BmeRI GACNNNNNGTC 1 cut(s) 4266
BmiI GGNNCC 9 cut(s) 421, 803, 1303, 2847, 3713, 3874, 4125, 4261, 4553
BmrI ACTGGG 1 cut(s) 2080
BmsI GCATC 8 cut(s) 301, 355, 532, 2137, 2962, 3628, 3899, 4457
BmuI ACTGGG 1 cut(s) 2080
BoxI GACNNNNGTC 1 cut(s) 1428
BpiI GAAGAC 7 cut(s) 108, 489, 2016, 2325, 2579, 2882, 4099
BplI GAGNNNNNCTC 2 cut(s) 898, 930
BpmI CTGGAG 2 cut(s) 1633, 4107
Bpu10I CCTNAGC 3 cut(s) 465, 564, 2018
Bpu14I TTCGAA 1 cut(s) 3098
BpuMI CCSGG 4 cut(s) 589, 3655, 3716, 3871
BsaAI YACGTR 3 cut(s) 1362, 3041, 3894
BsaBI GATNNNNATC 2 cut(s) 612, 3099
BsaHI GRCGYC 2 cut(s) 42, 190
BsaI GGTCTC 1 cut(s) 578
BsaWI WCCGGW 3 cut(s) 678, 1012, 2725
BsaXI ACNNNNNCTCC 6 cut(s) 56, 86, 329, 359, 4561, 4591
Bse118I RCCGGY 3 cut(s) 678, 1012, 3116
Bse1I ACTGG 7 cut(s) 687, 788, 1367, 1650, 1691, 2075, 4307
Bse3DI GCAATG 1 cut(s) 1217
Bse8I GATNNNNATC 2 cut(s) 612, 3099
BseBI CCWGG 6 cut(s) 89, 1349, 1416, 2117, 2605, 3298
BseJI GATNNNNATC 2 cut(s) 612, 3099
BseMI GCAATG 1 cut(s) 1217
BseMII CTCAG 9 cut(s) 456, 555, 679, 1073, 1163, 2225, 3249, 3489, 4420
BseNI ACTGG 7 cut(s) 687, 788, 1367, 1650, 1691, 2075, 4307
BseSI GKGCMC 4 cut(s) 804, 2423, 2536, 3233
BseXI GCAGC 9 cut(s) 301, 634, 766, 998, 1766, 1913, 3199, 3390, 4308
BseYI CCCAGC 1 cut(s) 132
BsgI GTGCAG 4 cut(s) 1899, 2657, 3348, 3850
BshFI GGCC 8 cut(s) 403, 414, 1366, 2472, 2608, 3076, 3712, 3875
BshNI GGYRCC 3 cut(s) 419, 801, 4551
BshTI ACCGGT 2 cut(s) 678, 1012
BsiHKAI GWGCWC 4 cut(s) 1207, 2536, 3233, 3476
BslFI GGGAC 7 cut(s) 486, 488, 1270, 2087, 4273, 4603, 4667
BsmAI GTCTC 4 cut(s) 578, 887, 979, 2153
BsmFI GGGAC 7 cut(s) 486, 488, 1270, 2087, 4273, 4603, 4667
BsmI GAATGC 5 cut(s) 289, 733, 828, 1107, 3922
BsnI GGCC 8 cut(s) 403, 414, 1366, 2472, 2608, 3076, 3712, 3875
Bso31I GGTCTC 1 cut(s) 578
Bsp119I TTCGAA 1 cut(s) 3098
Bsp1286I GDGCHC 7 cut(s) 804, 1178, 1207, 2423, 2536, 3233, 3476
Bsp19I CCATGG 2 cut(s) 2849, 3006
BspANI GGCC 8 cut(s) 403, 414, 1366, 2472, 2608, 3076, 3712, 3875
BspCNI CTCAG 9 cut(s) 457, 556, 678, 1072, 1164, 2226, 3250, 3488, 4419
BspHI TCATGA 3 cut(s) 2164, 2706, 2818
BspLI GGNNCC 9 cut(s) 421, 803, 1303, 2847, 3713, 3874, 4125, 4261, 4553
BspMAI CTGCAG 3 cut(s) 988, 997, 4320
BspMI ACCTGC 2 cut(s) 3337, 3408
BspPI GGATC 3 cut(s) 203, 931, 1892
BspQI GCTCTTC 1 cut(s) 3514
BspT104I TTCGAA 1 cut(s) 3098
BspT107I GGYRCC 3 cut(s) 419, 801, 4551
BspTNI GGTCTC 1 cut(s) 578
BsrBI CCGCTC 2 cut(s) 170, 4149
BsrDI GCAATG 1 cut(s) 1217
BsrFI RCCGGY 3 cut(s) 678, 1012, 3116
BsrI ACTGG 7 cut(s) 687, 788, 1367, 1650, 1691, 2075, 4307
BssAI RCCGGY 3 cut(s) 678, 1012, 3116
BssNAI GTATAC 2 cut(s) 3248, 3897
BssNI GRCGYC 2 cut(s) 42, 190
BssT1I CCWWGG 6 cut(s) 415, 805, 1847, 2849, 3006, 4154
Bst1107I GTATAC 2 cut(s) 3248, 3897
Bst2UI CCWGG 6 cut(s) 89, 1349, 1416, 2117, 2605, 3298
Bst6I CTCTTC 5 cut(s) 516, 845, 985, 3514, 4271
BstACI GRCGYC 2 cut(s) 42, 190
BstAPI GCANNNNNTGC 4 cut(s) 992, 2929, 3471, 4445
BstBAI YACGTR 3 cut(s) 1362, 3041, 3894
BstBI TTCGAA 1 cut(s) 3098
BstDSI CCRYGG 2 cut(s) 2849, 3006
BstHHI GCGC 2 cut(s) 1633, 2566
BstMAI GTCTC 4 cut(s) 578, 887, 979, 2153
BstNI CCWGG 6 cut(s) 89, 1349, 1416, 2117, 2605, 3298
BstNSI RCATGY 7 cut(s) 239, 2904, 2990, 3116, 3857, 3903, 4707
BstPAI GACNNNNGTC 1 cut(s) 1428
BstSFI CTRYAG 6 cut(s) 888, 984, 993, 1459, 2461, 4316
BstSLI GKGCMC 4 cut(s) 804, 2423, 2536, 3233
BstSNI TACGTA 1 cut(s) 3894
BstV1I GCAGC 9 cut(s) 301, 634, 766, 998, 1766, 1913, 3199, 3390, 4308
BstV2I GAAGAC 7 cut(s) 108, 489, 2016, 2325, 2579, 2882, 4099
BstX2I RGATCY 1 cut(s) 923
BstYI RGATCY 1 cut(s) 923
BstZ17I GTATAC 2 cut(s) 3248, 3897
BsuI GTATCC 1 cut(s) 3264
BsuRI GGCC 8 cut(s) 403, 414, 1366, 2472, 2608, 3076, 3712, 3875
BtgI CCRYGG 2 cut(s) 2849, 3006
BtsI GCAGTG 7 cut(s) 541, 1033, 1205, 1868, 3127, 3781, 4052
BveI ACCTGC 2 cut(s) 3337, 3408
CaiI CAGNNNCTG 2 cut(s) 992, 4302
CciI TCATGA 3 cut(s) 2164, 2706, 2818
CfoI GCGC 2 cut(s) 1633, 2566
Cfr10I RCCGGY 3 cut(s) 678, 1012, 3116
CseI GACGC 2 cut(s) 31, 198
CspAI ACCGGT 2 cut(s) 678, 1012
DraI TTTAAA 2 cut(s) 493, 1921
DriI GACNNNNNGTC 1 cut(s) 4266
EaeI YGGCCR 3 cut(s) 1364, 2470, 2606
Eam1104I CTCTTC 5 cut(s) 516, 845, 985, 3514, 4271
Eam1105I GACNNNNNGTC 1 cut(s) 4266
EarI CTCTTC 5 cut(s) 516, 845, 985, 3514, 4271
EciI GGCGGA 3 cut(s) 58, 118, 2896
Eco105I TACGTA 1 cut(s) 3894
Eco130I CCWWGG 6 cut(s) 415, 805, 1847, 2849, 3006, 4154
Eco24I GRGCYC 1 cut(s) 1178
Eco31I GGTCTC 1 cut(s) 578
Eco32I GATATC 1 cut(s) 879
Eco47I GGWCC 6 cut(s) 91, 684, 767, 2119, 2846, 4260
Eco57I CTGAAG 4 cut(s) 2010, 2337, 2409, 4650
EcoO109I RGGNCCY 2 cut(s) 91, 4260
EcoRI GAATTC 1 cut(s) 3262
EcoRII CCWGG 6 cut(s) 87, 1347, 1414, 2115, 2603, 3296
EcoRV GATATC 1 cut(s) 879
EcoT14I CCWWGG 6 cut(s) 415, 805, 1847, 2849, 3006, 4154
EcoT22I ATGCAT 2 cut(s) 2902, 4450
EcoT38I GRGCYC 1 cut(s) 1178
ErhI CCWWGG 6 cut(s) 415, 805, 1847, 2849, 3006, 4154
FalI AAGNNNNNCTT 8 cut(s) 1609, 1641, 2769, 2801, 4063, 4095, 4123, 4155
FaqI GGGAC 7 cut(s) 486, 488, 1270, 2087, 4273, 4603, 4667
FauI CCCGC 3 cut(s) 169, 175, 280
FblI GTMKAC 3 cut(s) 3247, 3896, 4135
FriOI GRGCYC 1 cut(s) 1178
FspI TGCGCA 2 cut(s) 1632, 2565
GlaI GCGC 2 cut(s) 1632, 2565
GsaI CCCAGC 1 cut(s) 136
GsuI CTGGAG 2 cut(s) 1633, 4107
HaeIII GGCC 8 cut(s) 403, 414, 1366, 2472, 2608, 3076, 3712, 3875
HgaI GACGC 2 cut(s) 31, 198
HhaI GCGC 2 cut(s) 1633, 2566
Hin1I GRCGYC 2 cut(s) 42, 190
Hin6I GCGC 2 cut(s) 1631, 2564
HinP1I GCGC 2 cut(s) 1631, 2564
HincII GTYRAC 3 cut(s) 2502, 3321, 4412
HindII GTYRAC 3 cut(s) 2502, 3321, 4412
HindIII AAGCTT 3 cut(s) 3440, 4077, 4535
HphI GGTGA 5 cut(s) 344, 1027, 1817, 2156, 3896
Hpy99I CGWCG 4 cut(s) 14, 47, 50, 192
HpyCH4IV ACGT 7 cut(s) 1008, 1361, 3040, 3893, 4175, 4238, 4345
HpySE526I ACGT 7 cut(s) 1008, 1361, 3040, 3893, 4175, 4238, 4345
Hsp92I GRCGYC 2 cut(s) 42, 190
HspAI GCGC 2 cut(s) 1631, 2564
KroI GCCGGC 1 cut(s) 3116
KroNI GCCGGC 1 cut(s) 3118
LguI GCTCTTC 1 cut(s) 3514
LmnI GCTCC 5 cut(s) 265, 1652, 2096, 2937, 3200
Lsp1109I GCAGC 9 cut(s) 301, 634, 766, 998, 1766, 1913, 3199, 3390, 4308
LweI GCATC 8 cut(s) 301, 355, 532, 2137, 2962, 3628, 3899, 4457
MaeII ACGT 7 cut(s) 1008, 1361, 3040, 3893, 4175, 4238, 4345
MbiI CCGCTC 2 cut(s) 170, 4149
MfeI CAATTG 5 cut(s) 2123, 2759, 3824, 4103, 4622
MflI RGATCY 1 cut(s) 923
MhlI GDGCHC 7 cut(s) 804, 1178, 1207, 2423, 2536, 3233, 3476
MlsI TGGCCA 3 cut(s) 1366, 2472, 2608
MluNI TGGCCA 3 cut(s) 1366, 2472, 2608
MmeI TCCRAC 5 cut(s) 28, 1518, 2281, 2731, 3158
Mox20I TGGCCA 3 cut(s) 1366, 2472, 2608
Mph1103I ATGCAT 2 cut(s) 2902, 4450
MroNI GCCGGC 1 cut(s) 3116
MroXI GAANNNNTTC 2 cut(s) 1555, 2389
MscI TGGCCA 3 cut(s) 1366, 2472, 2608
MslI CAYNNNNRTG 7 cut(s) 1210, 1989, 2787, 2958, 3792, 4021, 4708
Msp20I TGGCCA 3 cut(s) 1366, 2472, 2608
MspA1I CMGCKG 3 cut(s) 372, 2799, 3337
MunI CAATTG 5 cut(s) 2123, 2759, 3824, 4103, 4622
Mva1269I GAATGC 5 cut(s) 289, 733, 828, 1107, 3922
MvaI CCWGG 6 cut(s) 89, 1349, 1416, 2117, 2605, 3298
NaeI GCCGGC 1 cut(s) 3118
NciI CCSGG 4 cut(s) 589, 3655, 3716, 3871
NcoI CCATGG 2 cut(s) 2849, 3006
NgoMIV GCCGGC 1 cut(s) 3116
NlaIV GGNNCC 9 cut(s) 421, 803, 1303, 2847, 3713, 3874, 4125, 4261, 4553
NmuCI GTSAC 8 cut(s) 790, 1083, 1430, 1451, 1866, 3028, 3902, 4014
NsbI TGCGCA 2 cut(s) 1632, 2565
NsiI ATGCAT 2 cut(s) 2902, 4450
NspI RCATGY 7 cut(s) 239, 2904, 2990, 3116, 3857, 3903, 4707
NspV TTCGAA 1 cut(s) 3098
PaeI GCATGC 2 cut(s) 239, 3857
PagI TCATGA 3 cut(s) 2164, 2706, 2818
PaqCI CACCTGC 1 cut(s) 3408
PciI ACATGT 2 cut(s) 2986, 3899
PciSI GCTCTTC 1 cut(s) 3514
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 111
PctI GAATGC 5 cut(s) 289, 733, 828, 1107, 3922
PdiI GCCGGC 1 cut(s) 3118
PdmI GAANNNNTTC 2 cut(s) 1555, 2389
PflFI GACNNNGTC 1 cut(s) 3536
PfoI TCCNGGA 1 cut(s) 1347
PinAI ACCGGT 2 cut(s) 678, 1012
Ppu21I YACGTR 3 cut(s) 1362, 3041, 3894
PpuMI RGGWCCY 2 cut(s) 91, 4260
PscI ACATGT 2 cut(s) 2986, 3899
PshAI GACNNNNGTC 1 cut(s) 1428
PshBI ATTAAT 2 cut(s) 612, 1545
PsiI TTATAA 2 cut(s) 2582, 3771
Psp5II RGGWCCY 2 cut(s) 91, 4260
Psp6I CCWGG 6 cut(s) 87, 1347, 1414, 2115, 2603, 3296
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 6 cut(s) 87, 1347, 1414, 2115, 2603, 3296
PspN4I GGNNCC 9 cut(s) 421, 803, 1303, 2847, 3713, 3874, 4125, 4261, 4553
PspPPI RGGWCCY 2 cut(s) 91, 4260
PstI CTGCAG 3 cut(s) 988, 997, 4320
PstNI CAGNNNCTG 2 cut(s) 992, 4302
PsuI RGATCY 1 cut(s) 923
PsyI GACNNNGTC 1 cut(s) 3536
PvuII CAGCTG 2 cut(s) 2799, 3337
RseI CAYNNNNRTG 7 cut(s) 1210, 1989, 2787, 2958, 3792, 4021, 4708
SapI GCTCTTC 1 cut(s) 3514
ScaI AGTACT 1 cut(s) 1385
SduI GDGCHC 7 cut(s) 804, 1178, 1207, 2423, 2536, 3233, 3476
SfaNI GCATC 8 cut(s) 301, 355, 532, 2137, 2962, 3628, 3899, 4457
SfcI CTRYAG 6 cut(s) 888, 984, 993, 1459, 2461, 4316
SfuI TTCGAA 1 cut(s) 3098
SinI GGWCC 6 cut(s) 91, 684, 767, 2119, 2846, 4260
SmiMI CAYNNNNRTG 7 cut(s) 1210, 1989, 2787, 2958, 3792, 4021, 4708
SnaBI TACGTA 1 cut(s) 3894
SpeI ACTAGT 1 cut(s) 3323
SphI GCATGC 2 cut(s) 239, 3857
SspI AATATT 2 cut(s) 1164, 2614
StyI CCWWGG 6 cut(s) 415, 805, 1847, 2849, 3006, 4154
TaiI ACGT 7 cut(s) 1011, 1364, 3043, 3896, 4178, 4241, 4348
TaqI TCGA 9 cut(s) 123, 172, 251, 396, 444, 529, 705, 1559, 3098
TaqII GACCGA 1 cut(s) 1418
TatI WGTACW 3 cut(s) 1157, 1383, 4009
TauI GCSGC 3 cut(s) 1932, 3712, 4149
TseFI GTSAC 8 cut(s) 790, 1083, 1430, 1451, 1866, 3028, 3902, 4014
TseI GCWGC 9 cut(s) 314, 647, 779, 986, 1754, 1926, 3212, 3403, 4296
Tsp45I GTSAC 8 cut(s) 790, 1083, 1430, 1451, 1866, 3028, 3902, 4014
TspGWI ACGGA 2 cut(s) 120, 934
Tth111I GACNNNGTC 1 cut(s) 3536
VneI GTGCAC 2 cut(s) 2532, 3229
VpaK11BI GGWCC 6 cut(s) 91, 684, 767, 2119, 2846, 4260
VspI ATTAAT 2 cut(s) 612, 1545
XbaI TCTAGA 1 cut(s) 4325
XceI RCATGY 7 cut(s) 239, 2904, 2990, 3116, 3857, 3903, 4707
XmaJI CCTAGG 1 cut(s) 805
XmiI GTMKAC 3 cut(s) 3247, 3896, 4135
XmnI GAANNNNTTC 2 cut(s) 1555, 2389
ZrmI AGTACT 1 cut(s) 1385
Zsp2I ATGCAT 2 cut(s) 2902, 4450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.