Rh5CG375600

DDT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003576
Physical Location & Seq
Reverse (-)
48573824 .. 48585932
12109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG375600.1

Sequence Viewer

Length: 4725 bp
ATGGAGTTCGTCGGGAGAAGTGTGAGGAAAGAGTTGAAAGGCGTAGTCGGAACTGTGAAATCCTACTCCGCCTCCTCCGGCTTCTTCCAGGTCCTCTTTGAAGACGGAAATTCCGAACAATTCGACTCCGCCCAGCTCTCTCTCCTCCTCCTCGCCGACCCCGCCCCCGCCCGAAAGCCCAAGAAACGACGCCGTACAGGTAATTCTGATCCCAATTACAGGGGGGAGGATGAGCATGCTAGTAGTAATTCTAGTCCAGAAAGGGAGCAGGGGATTGATTTGAATGCGGGGTTTAATTTTAGCTTAAATGATGCTGCTGACCTGAATGTTGGTGAGGCGAGAGATTGTATTGATTTGAATTTGGATGCCAGCGGTTGTGATTCTGTTGATAATTTCGATGGGCCTAGTTTGGGCCAAGGGACCAAGCGGAGGGGTTGCGATTTCGATTTGAATTTGGAGGTTGCTGAGGAGGGGGACAGTGAAGACAAGTTTAAAATTAGTCCCAAGTTTGAGAGGATTGAAGAGAGTCGAAGCAGCGGAGATGCCGAAGGAAATGTTGCTGAGGATGGGAATGTTAATGAGACCCGGAAGCAAGTGTGTATTGATATTAATCAAGAAGTAGTTCCCTTGAATGGCATTGAGTGTGCTGCTGTTGGGGAAGGACTCGGTAATGAGAACCGGTGGTCCAGTGGAGATATGAAGGTCGAATCTTCTCTTGGGGATTTGAATACTACAAGTGCTGTTAAGGATAATGGCATGGTGGAAGATGTTCCTTCTGAAGCTGCTACTCCAGTGACTCATGGGCGCCTAGGCGATTCAGCAAGTCCAAGCATTCAAAAAAGTAGCCGAAGGAAGAGAAGAAAGCTACCGGATAATTTGATATCTAATACTACAGAGACAGTTTTGAGGAGAAGTTCTCGCAGAGGATCTGCTCGGAATCATGTTTCCGTTGCATCATATGCTGTTAGTAATCCTGTGTCCTCTTCTGCAGCTACTGCAGCAACAGAGGACGTACCAGTGATTTCTGGCAGTGAAGAAGCCGATAAGCCTAGTGTTGCCCCTCAGAAGCTCGAATTACCTCCTTCGTCACAACATTTGAATTTAGAGGGCATTCCCGTACTTGACCTTTTTTCTATTTATGCCTGTTTGAGATCATTTAGTACAATATTGTTTCTGAGTCCCTTCAAGTTGGAGGATTTTGTGAGAGCACTGCAATGCAACTCTCCTAGTTTGTTATTTGATTCGGTTCATGTTTCTATTTTGCAAACGCTAAGAAAGCATTTGGAGTCCCTTTCAAATGAAGGTTCCGAATCTGCTTCTGATTGTCTAAGGAGTCTTAATTGGGATTTCCTGGACTTAATTACGTGGCCAGTTTTCATGGTTGAGTACTTTCTGATTCATTGTTCAGGACTGAAACCTGGATTTGACCTCGGTCACTTTAAGCTATTAAAAAGTGACTACTACAGTCGGCCTGCTTCTCTAAAGGTTGAGATTCTTCGCTGTCTATGTGATGATTTGATAGAAGGGGAAGCCATAAAGTCGGAGATTAATAGAAGATGTTCGACATCTGAACATGACATGGGTTTTGATCGTGATGTAAACTCTGACGTCTGCAAGAAAAGGAAGGCTTCTGCGCAAATTGCTGGTAGCTCCAGTTTGAATGATGAAAATGTTGATGAAACCCCTGACTGGAATAGTGATGAATGTTGCCTCTGTAAGATGGAAGGGAACTTAATATGCTGTGATGGCTGTCCAGCAGCTTACCATTCAAGATGTGTAGGAGTTGTCAATGATCTTTTGCCGGAGGGTGATTGGTATTGCCCTGAATGTATGATTGATAGGCACAAACCTTGGATGAAACTCCGCAAGTCACTGCGAGGTGCAGAGCTATTAGGAATTGATCCTCATGGTCGGCTATATTTTAAAAGCTGCGGCTACCTGTTGGTATCTGGTTTTTGTGATGATGAATCTGCATTTAATTACTATCACAGAGATGATCTAAACAAGATTATTGAAGTGCTAAGGTCTTCAGAATTTTCCTATGGTGGGATATTATTGGGAATCTATAAGCACTGGGACATTCCTACTACCTTTAATGGAGCAATTAGTAGCAAGCCCCTGGACCAATTGGAATTTTCAGAAACAGGTGATGCTAAAAATGAGACGCATGAGGATAGAAAACTGCAAGAGAAGTTTTGTAATCTCGTTTCTGATGTTTCAAATTCTGTTCAAGTGCTGAGAAGGACTGTCATTCAGGATGATTCAAATAATCTTGCTGATATTTCAAATCAATCAGATTTGGTCGGAAAACTTCATCCTGAAGACTGTTCTTTGACATCTACTTGCTTAGATGTCAGACAAGAGAGCAACGGTTCTATTGATCTTGGAAAAATTTCATCTGCTATAACCACTAGAAAAGAGGGCACTTCAGAAGTGGATTGTGGAATTGATTACATGAACTACTACAGTTTTGGCCAAATTGCTTCATCTGTTGCAGAGGAGTTGTCTAAATCATCAGAAAAGAATAAGGAAGGTGCACTAAATACAGTAGATGAAATAATATCTGCGCAGATGAAGACCATTATAAAAAAATCTTCCAAGTTTTCCTGGCCAAATATTGAGAACTTAAATATAGATGTGCAGAAAGAGAAATGTGGGTGGTGCTTTTCTTGCAAATATCCTGCTGATGATAGGGATTGCTTGCTTATCATGAGTAAGCTGCCTTTACCGGATGTTTCCAAGACTGATGTAGTTGGACTTCAATTGAAAAAAATTCCCAAAGATCATCTTAATGATGTCAGCTGTCAAATTTTGTCCATTCATGATCGCCTGCTTGGGCTTTTGTTGGGTCCGTGGTTGAACCCCCATCATACAGAATGCTGGCGGAATAGTCTTCTTAATGCACGCGATCTTGCCTCTGTTAAGCATTTACTGCTCCTTCTAGTGGAAAATTTGCATCATCGTGCATTGTCCGCAGATTGGTTGAAACATGTGGACGCTGTTGTTACCATGGGTTCAGCTTCTCATGTTGTGACTTCATTACGTGCATACTCAAAGAACATGAATAGCAGAAAGAGGCCCAAGTTTTCTGATATTGATTCAAATCCATCTTCAAATGCCGGCAGTGGATTGGGAATGTTTTGGTGGAGGGGTGGCAGGCTTTCTCGTCAGGTGTTTGGTTGGAAGATTTTGCCTCACTCCTTGACTTCTAAGGCTGCCAGACAAGGTGGGTGCACAAAAATAATGGGTATATTGTATCCTGAGAATTCAGAATATGCAAAGAGAAGCAAATATATTGCCTGGCGAGCTACTGTTGAGATGTCAACTAGTGCAGAACAGCTTGCTTTGCAGGTTAGGGAGCTTTATTCAAACATTAGGTGGGATGATATTGAGAACACACACCCGCTGCCTACATTGGACAAGGAATCTACAAAATCAATCAAGCTTTTCAGGAAAGTTATTGTCCGCAGGAAGTGCTCAGAAAAGGGAGTGGTTAAGTATCTTCTTGATTTTGGCAAGAGAAGAGCAATCCCCGACATTGTCAGGAAACATGGTTCTGTGCTTGAAGAACCATCTAATGAGAGGAAAAAGTATTGGCTTGAAGAATCATATCTTCCTCTGCATCTTTTGAAAAATTTTGAGGAGAGAAGAATTGCCCGCAAGTCTAGTGATGGGAAGTCTGGTAAAGTTCTTGCAGTTGGTAGAGTAATGCGGCCCCCGGATGAAAAGGGATTTGCTTATTTGTTTTCCAAAGCAGAAAGATCAGAGTATTATAAGTGTGGACACTGCCACAAAGATGTCCTGATAAGGGAAGCTGTGAGTTGTCAATTGTGCAGAGGATTTTTCCACAAAAGGCATGCGAAGAAGTCTGCTGGGGCCATTGTTTCCGAGTGTACGTATACATGCCACCGATGCCAGAATGGGGTCTCTGCGAAGATTGATACAAAAAGAGGGAAAGCTGATAAAAAGAGAGGAAAAGTTGGTATGAAAAGAGGGAAAGTTGAAACAAAAATAGAGAAAGTACAGTCACAGAAATGTAAAAATTCTCAAACTGATCGTAGATCACTGCGTTTGAGAAGCAAAAGAAAAGCTTTAGCTGGAGGAAGACAGGTACAATTGAAAAATAGCAAAAAGGTTCCTGTAAGTGTACCTTTACGCCGCTCTCCAAGGAAAGCTAAATGCTTGACGTTGCAAAATAAAAAGCATAGCAAACGCAAGAAAGGGAAACAAAGCAAATCCAAGAAGCGGACGTATAAGAAACCAAAGACAGGGACCCTGTGTCAGAAGAAGAGAACACAAGTTTATCGCAGTTACTGGCTAAATGGTCTGCAGTTGTCTAGAAAGCCAAATGATAAACGTGTTACGCTTTTTAGGGAGAAAAAACTACTTGCTCACTCTGGCTGTTCTTCAATCGTTCTCGGTCAACTCAAATGCCAGCTCTGTTGTGAAGCAGAATATGCATCTACTTTAGATTATATCGGGTGTGAACTATGTGGAGAGTGGTTTCATGGAGAGGCTTTTGGGCTGGATTCAGAGAACATTGATAAGCTCATTGGATTCAGGTGCCATGTGTGTCGTAAAACAGAACCTCCTGTCTGCCCCCATCTGGTAGTTGTGAAAACTGATGTGTCCCAATTGGCTGAAGCTCATACTGATGGTTCTGTTGATTGTTCAGAGGAAGTACCTAATGCAGTCCCGACTTTGAGTGAGATTACATGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031010 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

1574

Amino Acids

175.76

Weight (kDa)

8.63

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 5 - 47 2e-06 PTM/DIR17-like, Tudor domain
DDT PF02791 373 - 427 4.7e-17 DDT domain
PHD PF00628 569 - 610 1e-06 PHD-finger
Chromo_PTM PF24294 1148 - 1220 5.9e-27 Membrane-bound transcription factor PTM, chromo domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2585, 3774
AatII GACGTC 1 cut(s) 1611
Acc16I TGCGCA 2 cut(s) 1635, 2568
Acc36I ACCTGC 1 cut(s) 3340
AccB1I GGYRCC 2 cut(s) 804, 4563
AccBSI CCGCTC 1 cut(s) 4161
AccI GTMKAC 1 cut(s) 3899
AccII CGCG 1 cut(s) 2907
AclWI GGATC 3 cut(s) 203, 934, 1895
AcoI YGGCCR 3 cut(s) 1367, 2473, 2609
AcuI CTGAAG 5 cut(s) 798, 2013, 2340, 2412, 4662
AcyI GRCGYC 3 cut(s) 190, 805, 1608
AflIII ACRYGT 2 cut(s) 2989, 4357
AgeI ACCGGT 1 cut(s) 678
AhdI GACNNNNNGTC 1 cut(s) 4278
AhlI ACTAGT 1 cut(s) 3326
AjnI CCWGG 6 cut(s) 87, 1350, 1417, 2118, 2606, 3299
AjuI GAANNNNNNNTTGG 2 cut(s) 699, 731
AloI GAACNNNNNNTCC 4 cut(s) 668, 700, 3538, 3570
Alw21I GWGCWC 4 cut(s) 1210, 2539, 3236, 3479
Alw26I GTCTC 4 cut(s) 575, 890, 2156, 3931
Alw44I GTGCAC 2 cut(s) 2535, 3232
AlwI GGATC 3 cut(s) 203, 934, 1895
AlwNI CAGNNNCTG 2 cut(s) 995, 4314
AoxI GGCC 9 cut(s) 401, 412, 1367, 1469, 2473, 2609, 3077, 3713, 3876
ApaLI GTGCAC 2 cut(s) 2535, 3232
ArsI GACNNNNNNTTYG 2 cut(s) 1568, 1600
AseI ATTAAT 2 cut(s) 609, 1548
AsiGI ACCGGT 1 cut(s) 678
Asp700I GAANNNNTTC 4 cut(s) 621, 768, 1558, 2392
AspA2I CCTAGG 1 cut(s) 808
AspLEI GCGC 3 cut(s) 807, 1636, 2569
AsuC2I CCSGG 2 cut(s) 586, 3719
AsuHPI GGTGA 3 cut(s) 344, 1820, 2159
AvaII GGWCC 6 cut(s) 91, 420, 684, 2122, 2849, 4272
AvrII CCTAGG 1 cut(s) 808
BaeGI GKGCMC 3 cut(s) 2426, 2539, 3236
BalI TGGCCA 3 cut(s) 1369, 2475, 2611
BanI GGYRCC 2 cut(s) 804, 4563
BarI GAAGNNNNNNTAC 2 cut(s) 2742, 2774
BbsI GAAGAC 7 cut(s) 108, 489, 2019, 2328, 2582, 2885, 4111
Bbv12I GWGCWC 4 cut(s) 1210, 2539, 3236, 3479
BbvCI CCTCAGC 2 cut(s) 465, 561
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 6 cut(s) 89, 1352, 1419, 2120, 2608, 3301
BciVI GTATCC 1 cut(s) 3267
BcnI CCSGG 2 cut(s) 586, 3719
BcoDI GTCTC 4 cut(s) 575, 890, 2156, 3931
BcuI ACTAGT 1 cut(s) 3326
BfmI CTRYAG 6 cut(s) 891, 987, 996, 1462, 2464, 4328
BfoI RGCGCY 1 cut(s) 808
BfuAI ACCTGC 1 cut(s) 3340
BfuI GTATCC 1 cut(s) 3267
BlnI CCTAGG 1 cut(s) 808
BmcAI AGTACT 1 cut(s) 1388
Bme1390I CCNGG 8 cut(s) 89, 586, 1352, 1419, 2120, 2608, 3301, 3719
Bme18I GGWCC 6 cut(s) 91, 420, 684, 2122, 2849, 4272
BmeRI GACNNNNNGTC 1 cut(s) 4278
BmrFI CCNGG 8 cut(s) 89, 586, 1352, 1419, 2120, 2608, 3301, 3719
BmrI ACTGGG 1 cut(s) 2083
BmsI GCATC 9 cut(s) 301, 355, 532, 962, 2140, 2965, 3631, 3902, 4469
BmuI ACTGGG 1 cut(s) 2083
BoxI GACNNNNGTC 1 cut(s) 1431
BpiI GAAGAC 7 cut(s) 108, 489, 2019, 2328, 2582, 2885, 4111
BplI GAGNNNNNCTC 2 cut(s) 901, 933
BpmI CTGGAG 3 cut(s) 774, 1636, 4119
Bpu10I CCTNAGC 3 cut(s) 465, 561, 2021
BpuMI CCSGG 2 cut(s) 586, 3719
BsaAI YACGTR 3 cut(s) 1365, 3044, 3897
BsaBI GATNNNNATC 2 cut(s) 609, 3102
BsaHI GRCGYC 3 cut(s) 190, 805, 1608
BsaI GGTCTC 2 cut(s) 575, 3931
BsaJI CCNNGG 9 cut(s) 415, 808, 1429, 1850, 2118, 2852, 3009, 3717, 4166
BsaWI WCCGGW 3 cut(s) 678, 868, 2728
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 4573, 4603
Bse118I RCCGGY 2 cut(s) 678, 3119
Bse1I ACTGG 8 cut(s) 687, 791, 1016, 1370, 1653, 1694, 2078, 4319
Bse3DI GCAATG 1 cut(s) 1220
Bse8I GATNNNNATC 2 cut(s) 609, 3102
BseBI CCWGG 6 cut(s) 89, 1352, 1419, 2120, 2608, 3301
BseDI CCNNGG 9 cut(s) 415, 808, 1429, 1850, 2118, 2852, 3009, 3717, 4166
BseGI GGATG 9 cut(s) 235, 370, 571, 1860, 2263, 2314, 2737, 3388, 3727
BseJI GATNNNNATC 2 cut(s) 609, 3102
BseMI GCAATG 1 cut(s) 1220
BseMII CTCAG 7 cut(s) 456, 552, 1076, 1166, 2228, 3252, 3492
BseNI ACTGG 8 cut(s) 687, 791, 1016, 1370, 1653, 1694, 2078, 4319
BseRI GAGGAG 8 cut(s) 64, 134, 137, 140, 482, 922, 2513, 3656
BseSI GKGCMC 3 cut(s) 2426, 2539, 3236
BseYI CCCAGC 2 cut(s) 132, 3872
BsgI GTGCAG 4 cut(s) 1902, 2660, 3351, 3853
Bsh1236I CGCG 1 cut(s) 2907
BshFI GGCC 9 cut(s) 403, 414, 1369, 1471, 2475, 2611, 3079, 3715, 3878
BshNI GGYRCC 2 cut(s) 804, 4563
BshTI ACCGGT 1 cut(s) 678
BsiHKAI GWGCWC 4 cut(s) 1210, 2539, 3236, 3479
BsiSI CCGG 8 cut(s) 78, 586, 679, 869, 1802, 2729, 3120, 3719
BslFI GGGAC 9 cut(s) 433, 486, 488, 1164, 1273, 2090, 4285, 4615, 4679
BsmAI GTCTC 4 cut(s) 575, 890, 2156, 3931
BsmBI CGTCTC 1 cut(s) 2156
BsmFI GGGAC 9 cut(s) 433, 486, 488, 1164, 1273, 2090, 4285, 4615, 4679
BsmI GAATGC 4 cut(s) 289, 831, 1110, 2882
BsnI GGCC 9 cut(s) 403, 414, 1369, 1471, 2475, 2611, 3079, 3715, 3878
Bso31I GGTCTC 2 cut(s) 575, 3931
Bsp1286I GDGCHC 5 cut(s) 1210, 2426, 2539, 3236, 3479
Bsp19I CCATGG 1 cut(s) 3009
BspANI GGCC 9 cut(s) 403, 414, 1369, 1471, 2475, 2611, 3079, 3715, 3878
BspCNI CTCAG 7 cut(s) 457, 553, 1075, 1167, 2229, 3253, 3491
BspFNI CGCG 1 cut(s) 2907
BspHI TCATGA 2 cut(s) 2709, 2821
BspMAI CTGCAG 3 cut(s) 991, 1000, 4332
BspMI ACCTGC 1 cut(s) 3340
BspPI GGATC 3 cut(s) 203, 934, 1895
BspQI GCTCTTC 1 cut(s) 3517
BspT107I GGYRCC 2 cut(s) 804, 4563
BspTNI GGTCTC 2 cut(s) 575, 3931
BsrBI CCGCTC 1 cut(s) 4161
BsrDI GCAATG 1 cut(s) 1220
BsrFI RCCGGY 2 cut(s) 678, 3119
BsrI ACTGG 8 cut(s) 687, 791, 1016, 1370, 1653, 1694, 2078, 4319
BssAI RCCGGY 2 cut(s) 678, 3119
BssECI CCNNGG 9 cut(s) 415, 808, 1429, 1850, 2118, 2852, 3009, 3717, 4166
BssNAI GTATAC 1 cut(s) 3900
BssNI GRCGYC 3 cut(s) 190, 805, 1608
BssT1I CCWWGG 5 cut(s) 415, 808, 1850, 3009, 4166
Bst1107I GTATAC 1 cut(s) 3900
Bst2UI CCWGG 6 cut(s) 89, 1352, 1419, 2120, 2608, 3301
Bst6I CTCTTC 5 cut(s) 516, 848, 988, 3517, 4283
BstACI GRCGYC 3 cut(s) 190, 805, 1608
BstAPI GCANNNNNTGC 5 cut(s) 959, 995, 2932, 3474, 4457
BstBAI YACGTR 3 cut(s) 1365, 3044, 3897
BstDSI CCRYGG 2 cut(s) 2852, 3009
BstF5I GGATG 9 cut(s) 235, 370, 571, 1860, 2263, 2314, 2737, 3388, 3727
BstFNI CGCG 1 cut(s) 2907
BstH2I RGCGCY 1 cut(s) 808
BstHHI GCGC 3 cut(s) 807, 1636, 2569
BstMAI GTCTC 4 cut(s) 575, 890, 2156, 3931
BstNI CCWGG 6 cut(s) 89, 1352, 1419, 2120, 2608, 3301
BstNSI RCATGY 5 cut(s) 239, 2993, 3860, 3906, 4719
BstPAI GACNNNNGTC 1 cut(s) 1431
BstSCI CCNGG 8 cut(s) 87, 584, 1350, 1417, 2118, 2606, 3299, 3717
BstSFI CTRYAG 6 cut(s) 891, 987, 996, 1462, 2464, 4328
BstSLI GKGCMC 3 cut(s) 2426, 2539, 3236
BstSNI TACGTA 1 cut(s) 3897
BstUI CGCG 1 cut(s) 2907
BstV2I GAAGAC 7 cut(s) 108, 489, 2019, 2328, 2582, 2885, 4111
BstX2I RGATCY 1 cut(s) 926
BstYI RGATCY 1 cut(s) 926
BstZ17I GTATAC 1 cut(s) 3900
BsuI GTATCC 1 cut(s) 3267
BsuRI GGCC 9 cut(s) 403, 414, 1369, 1471, 2475, 2611, 3079, 3715, 3878
BtgI CCRYGG 2 cut(s) 2852, 3009
BtsCI GGATG 9 cut(s) 235, 370, 571, 1860, 2263, 2314, 2737, 3388, 3727
BtsI GCAGTG 6 cut(s) 1036, 1208, 1871, 3130, 3784, 4064
BveI ACCTGC 1 cut(s) 3340
CaiI CAGNNNCTG 2 cut(s) 995, 4314
CciI TCATGA 2 cut(s) 2709, 2821
CfoI GCGC 3 cut(s) 807, 1636, 2569
Cfr10I RCCGGY 2 cut(s) 678, 3119
CseI GACGC 3 cut(s) 198, 2173, 3005
CspAI ACCGGT 1 cut(s) 678
DinI GGCGCC 1 cut(s) 806
DraI TTTAAA 2 cut(s) 493, 1924
DriI GACNNNNNGTC 1 cut(s) 4278
EaeI YGGCCR 3 cut(s) 1367, 2473, 2609
Eam1104I CTCTTC 5 cut(s) 516, 848, 988, 3517, 4283
Eam1105I GACNNNNNGTC 1 cut(s) 4278
EarI CTCTTC 5 cut(s) 516, 848, 988, 3517, 4283
EciI GGCGGA 3 cut(s) 58, 118, 2899
Eco105I TACGTA 1 cut(s) 3897
Eco130I CCWWGG 5 cut(s) 415, 808, 1850, 3009, 4166
Eco31I GGTCTC 2 cut(s) 575, 3931
Eco32I GATATC 1 cut(s) 882
Eco47I GGWCC 6 cut(s) 91, 420, 684, 2122, 2849, 4272
Eco57I CTGAAG 5 cut(s) 798, 2013, 2340, 2412, 4662
EcoO109I RGGNCCY 2 cut(s) 91, 4272
EcoRI GAATTC 1 cut(s) 3265
EcoRII CCWGG 6 cut(s) 87, 1350, 1417, 2118, 2606, 3299
EcoRV GATATC 1 cut(s) 882
EcoT14I CCWWGG 5 cut(s) 415, 808, 1850, 3009, 4166
EcoT22I ATGCAT 1 cut(s) 4462
EgeI GGCGCC 1 cut(s) 806
EheI GGCGCC 1 cut(s) 806
ErhI CCWWGG 5 cut(s) 415, 808, 1850, 3009, 4166
Esp3I CGTCTC 1 cut(s) 2156
FalI AAGNNNNNCTT 8 cut(s) 1612, 1644, 2772, 2804, 4075, 4107, 4135, 4167
FaqI GGGAC 9 cut(s) 433, 486, 488, 1164, 1273, 2090, 4285, 4615, 4679
FauI CCCGC 5 cut(s) 169, 175, 280, 3411, 3665
FauNDI CATATG 1 cut(s) 958
FblI GTMKAC 1 cut(s) 3899
FokI GGATG 9 cut(s) 242, 377, 578, 1867, 2270, 2301, 2744, 3395, 3734
FspI TGCGCA 2 cut(s) 1635, 2568
GlaI GCGC 3 cut(s) 806, 1635, 2568
GsaI CCCAGC 2 cut(s) 136, 3876
GsuI CTGGAG 3 cut(s) 774, 1636, 4119
HaeII RGCGCY 1 cut(s) 808
HaeIII GGCC 9 cut(s) 403, 414, 1369, 1471, 2475, 2611, 3079, 3715, 3878
HapII CCGG 8 cut(s) 78, 586, 679, 869, 1802, 2729, 3120, 3719
HgaI GACGC 3 cut(s) 198, 2173, 3005
HhaI GCGC 3 cut(s) 807, 1636, 2569
Hin1I GRCGYC 3 cut(s) 190, 805, 1608
Hin6I GCGC 3 cut(s) 805, 1634, 2567
HinP1I GCGC 3 cut(s) 805, 1634, 2567
HincII GTYRAC 2 cut(s) 3324, 4424
HindII GTYRAC 2 cut(s) 3324, 4424
HindIII AAGCTT 2 cut(s) 3443, 4089
HpaII CCGG 8 cut(s) 78, 586, 679, 869, 1802, 2729, 3120, 3719
HphI GGTGA 3 cut(s) 344, 1820, 2159
Hpy99I CGWCG 2 cut(s) 14, 192
HpyCH4IV ACGT 8 cut(s) 1011, 1364, 1608, 3043, 3896, 4187, 4250, 4357
HpySE526I ACGT 8 cut(s) 1011, 1364, 1608, 3043, 3896, 4187, 4250, 4357
Hsp92I GRCGYC 3 cut(s) 190, 805, 1608
HspAI GCGC 3 cut(s) 805, 1634, 2567
KasI GGCGCC 1 cut(s) 804
KflI GGGWCCC 1 cut(s) 4272
KroI GCCGGC 1 cut(s) 3119
KroNI GCCGGC 1 cut(s) 3121
LguI GCTCTTC 1 cut(s) 3517
LmnI GCTCC 5 cut(s) 265, 1655, 2099, 2940, 3358
LweI GCATC 9 cut(s) 301, 355, 532, 962, 2140, 2965, 3631, 3902, 4469
MaeII ACGT 8 cut(s) 1011, 1364, 1608, 3043, 3896, 4187, 4250, 4357
MbiI CCGCTC 1 cut(s) 4161
MfeI CAATTG 5 cut(s) 2126, 2762, 3827, 4115, 4634
MflI RGATCY 1 cut(s) 926
MhlI GDGCHC 5 cut(s) 1210, 2426, 2539, 3236, 3479
MlsI TGGCCA 3 cut(s) 1369, 2475, 2611
MluNI TGGCCA 3 cut(s) 1369, 2475, 2611
Mly113I GGCGCC 1 cut(s) 805
MlyI GAGTC 7 cut(s) 119, 535, 657, 790, 1186, 1295, 1342
MmeI TCCRAC 6 cut(s) 28, 1170, 1521, 2284, 2734, 3161
Mox20I TGGCCA 3 cut(s) 1369, 2475, 2611
Mph1103I ATGCAT 1 cut(s) 4462
MroNI GCCGGC 1 cut(s) 3119
MroXI GAANNNNTTC 4 cut(s) 621, 768, 1558, 2392
MscI TGGCCA 3 cut(s) 1369, 2475, 2611
MslI CAYNNNNRTG 8 cut(s) 1213, 1992, 2790, 2961, 3795, 4033, 4653, 4720
Msp20I TGGCCA 3 cut(s) 1369, 2475, 2611
MspA1I CMGCKG 4 cut(s) 372, 537, 2802, 3406
MspI CCGG 8 cut(s) 78, 586, 679, 869, 1802, 2729, 3120, 3719
MspR9I CCNGG 8 cut(s) 89, 586, 1352, 1419, 2120, 2608, 3301, 3719
MunI CAATTG 5 cut(s) 2126, 2762, 3827, 4115, 4634
Mva1269I GAATGC 4 cut(s) 289, 831, 1110, 2882
MvaI CCWGG 6 cut(s) 89, 1352, 1419, 2120, 2608, 3301
MvnI CGCG 1 cut(s) 2907
NaeI GCCGGC 1 cut(s) 3121
NarI GGCGCC 1 cut(s) 805
NciI CCSGG 2 cut(s) 586, 3719
NcoI CCATGG 1 cut(s) 3009
NdeI CATATG 1 cut(s) 958
NgoMIV GCCGGC 1 cut(s) 3119
NmuCI GTSAC 7 cut(s) 793, 1086, 1433, 1454, 1869, 3031, 4026
NsbI TGCGCA 2 cut(s) 1635, 2568
NsiI ATGCAT 1 cut(s) 4462
NspI RCATGY 5 cut(s) 239, 2993, 3860, 3906, 4719
PaeI GCATGC 2 cut(s) 239, 3860
PagI TCATGA 2 cut(s) 2709, 2821
PciI ACATGT 1 cut(s) 2989
PciSI GCTCTTC 1 cut(s) 3517
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 4 cut(s) 289, 831, 1110, 2882
PdiI GCCGGC 1 cut(s) 3121
PdmI GAANNNNTTC 4 cut(s) 621, 768, 1558, 2392
PflFI GACNNNGTC 1 cut(s) 3539
PfoI TCCNGGA 1 cut(s) 1350
PinAI ACCGGT 1 cut(s) 678
PleI GAGTC 7 cut(s) 119, 534, 657, 790, 1185, 1294, 1341
PluTI GGCGCC 1 cut(s) 808
PpsI GAGTC 7 cut(s) 119, 534, 657, 790, 1185, 1294, 1341
Ppu21I YACGTR 3 cut(s) 1365, 3044, 3897
PpuMI RGGWCCY 2 cut(s) 91, 4272
PscI ACATGT 1 cut(s) 2989
PshAI GACNNNNGTC 1 cut(s) 1431
PshBI ATTAAT 2 cut(s) 609, 1548
PsiI TTATAA 2 cut(s) 2585, 3774
Psp5II RGGWCCY 2 cut(s) 91, 4272
Psp6I CCWGG 6 cut(s) 87, 1350, 1417, 2118, 2606, 3299
PspFI CCCAGC 2 cut(s) 132, 3872
PspGI CCWGG 6 cut(s) 87, 1350, 1417, 2118, 2606, 3299
PspPPI RGGWCCY 2 cut(s) 91, 4272
PstI CTGCAG 3 cut(s) 991, 1000, 4332
PstNI CAGNNNCTG 2 cut(s) 995, 4314
PsuI RGATCY 1 cut(s) 926
PsyI GACNNNGTC 1 cut(s) 3539
PvuII CAGCTG 1 cut(s) 2802
RseI CAYNNNNRTG 8 cut(s) 1213, 1992, 2790, 2961, 3795, 4033, 4653, 4720
SapI GCTCTTC 1 cut(s) 3517
ScaI AGTACT 1 cut(s) 1388
SchI GAGTC 7 cut(s) 119, 535, 657, 790, 1186, 1295, 1342
ScrFI CCNGG 8 cut(s) 89, 586, 1352, 1419, 2120, 2608, 3301, 3719
SduI GDGCHC 5 cut(s) 1210, 2426, 2539, 3236, 3479
SfaNI GCATC 9 cut(s) 301, 355, 532, 962, 2140, 2965, 3631, 3902, 4469
SfcI CTRYAG 6 cut(s) 891, 987, 996, 1462, 2464, 4328
SfoI GGCGCC 1 cut(s) 806
SinI GGWCC 6 cut(s) 91, 420, 684, 2122, 2849, 4272
SmiMI CAYNNNNRTG 8 cut(s) 1213, 1992, 2790, 2961, 3795, 4033, 4653, 4720
SnaBI TACGTA 1 cut(s) 3897
SpeI ACTAGT 1 cut(s) 3326
SphI GCATGC 2 cut(s) 239, 3860
SspDI GGCGCC 1 cut(s) 804
SspI AATATT 2 cut(s) 1167, 2617
StyD4I CCNGG 8 cut(s) 87, 584, 1350, 1417, 2118, 2606, 3299, 3717
StyI CCWWGG 5 cut(s) 415, 808, 1850, 3009, 4166
TaiI ACGT 8 cut(s) 1014, 1367, 1611, 3046, 3899, 4190, 4253, 4360
TaqI TCGA 7 cut(s) 123, 396, 444, 529, 705, 1071, 1562
TaqII GACCGA 2 cut(s) 1421, 4409
TatI WGTACW 3 cut(s) 1160, 1386, 4021
TauI GCSGC 3 cut(s) 1935, 3715, 4161
TseFI GTSAC 7 cut(s) 793, 1086, 1433, 1454, 1869, 3031, 4026
Tsp45I GTSAC 7 cut(s) 793, 1086, 1433, 1454, 1869, 3031, 4026
TspGWI ACGGA 3 cut(s) 120, 937, 2841
Tth111I GACNNNGTC 1 cut(s) 3539
VneI GTGCAC 2 cut(s) 2535, 3232
VpaK11BI GGWCC 6 cut(s) 91, 420, 684, 2122, 2849, 4272
VspI ATTAAT 2 cut(s) 609, 1548
XbaI TCTAGA 1 cut(s) 4337
XceI RCATGY 5 cut(s) 239, 2993, 3860, 3906, 4719
XmaJI CCTAGG 1 cut(s) 808
XmiI GTMKAC 1 cut(s) 3899
XmnI GAANNNNTTC 4 cut(s) 621, 768, 1558, 2392
ZraI GACGTC 1 cut(s) 1609
ZrmI AGTACT 1 cut(s) 1388
Zsp2I ATGCAT 1 cut(s) 4462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.