DDT domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G12400 |
| fragaria_vesca | FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 |
| malus_domestica | MD03G1169900.v1.1 MD11G1187100.v1.1 |
| prunus_persica | Prupe.4G257200_v2.0.a1 Prupe.4G257200_v2.0.a1 Prupe.4G257200_v2.0.a1 Prupe.4G257200_v2.0.a1 Prupe.4G257200_v2.0.a1 |
| pyrus_communis | pycom03g12620 pycom11g16390 pycom11g16400 |
| rosa_chinensis | RchiOBHm_Chr5g0051171 |
| rosa_laevigata | RLG00000034759 |
| rosa_multiflora | Rmu_co8421621.1_g000001 Rmu_sc0000446.1_g000011 Rmu_sc0020509.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00029270 Rroxscaffold_1G00029280 |
| rosa_rugosa | Rorug05G0266200 |
| rosa_samantha | Rh5AG338600 Rh5BG348500 Rh5CG375600 Rh5DG361400 |
| rosa_wichuraiana | Rw0G023670 Rw5G031980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1528 |
| Acc36I | ACCTGC | 1 cut(s) | 1789 |
| Acc65I | GGTACC | 3 cut(s) | 1955, 2244, 4907 |
| AccB1I | GGYRCC | 4 cut(s) | 234, 1955, 2244, 4907 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 584, 1998 |
| AccII | CGCG | 1 cut(s) | 2782 |
| AclWI | GGATC | 7 cut(s) | 569, 666, 1017, 1274, 1699, 2204, 2594 |
| AcoI | YGGCCR | 5 cut(s) | 214, 1676, 2367, 2746, 2885 |
| AcyI | GRCGYC | 1 cut(s) | 235 |
| AdeI | CACNNNGTG | 1 cut(s) | 2417 |
| AflIII | ACRYGT | 5 cut(s) | 2465, 2780, 3265, 4606, 4818 |
| AgeI | ACCGGT | 1 cut(s) | 4438 |
| AhlI | ACTAGT | 1 cut(s) | 3581 |
| AjiI | CACGTC | 1 cut(s) | 1524 |
| AjnI | CCWGG | 5 cut(s) | 803, 893, 1726, 3554, 4118 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 351, 383, 2530, 2562 |
| AleI | CACNNNNGTG | 2 cut(s) | 1522, 4285 |
| Alw21I | GWGCWC | 6 cut(s) | 1243, 2413, 2917, 3244, 3734, 4042 |
| Alw26I | GTCTC | 5 cut(s) | 884, 1037, 1100, 1214, 2477 |
| Alw44I | GTGCAC | 3 cut(s) | 2913, 3240, 4038 |
| AlwI | GGATC | 7 cut(s) | 569, 666, 1017, 1274, 1699, 2204, 2594 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1378, 1628, 2522, 4563 |
| Ama87I | CYCGRG | 1 cut(s) | 3975 |
| ApaI | GGGCCC | 1 cut(s) | 3128 |
| ApaLI | GTGCAC | 3 cut(s) | 2913, 3240, 4038 |
| AseI | ATTAAT | 4 cut(s) | 798, 918, 1056, 1857 |
| AsiGI | ACCGGT | 1 cut(s) | 4438 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 32, 286, 927 |
| Asp718I | GGTACC | 3 cut(s) | 1955, 2244, 4907 |
| AspA2I | CCTAGG | 1 cut(s) | 1132 |
| AspLEI | GCGC | 1 cut(s) | 237 |
| AspS9I | GGNCC | 5 cut(s) | 1105, 3124, 3125, 3333, 3972 |
| AsuC2I | CCSGG | 2 cut(s) | 3976, 3977 |
| AsuHPI | GGTGA | 8 cut(s) | 46, 688, 785, 983, 1096, 1524, 2129, 4772 |
| AsuII | TTCGAA | 2 cut(s) | 1967, 4007 |
| AsuNHI | GCTAGC | 1 cut(s) | 2657 |
| AvaI | CYCGRG | 1 cut(s) | 3975 |
| AvrII | CCTAGG | 1 cut(s) | 1132 |
| BaeGI | GKGCMC | 5 cut(s) | 2917, 3128, 3244, 4042, 4502 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1793, 1826 |
| BalI | TGGCCA | 4 cut(s) | 1678, 2369, 2748, 2887 |
| BanI | GGYRCC | 4 cut(s) | 234, 1955, 2244, 4907 |
| BanII | GRGCYC | 1 cut(s) | 3128 |
| BauI | CACGAG | 2 cut(s) | 182, 2214 |
| BbsI | GAAGAC | 4 cut(s) | 2328, 2643, 2858, 4704 |
| Bbv12I | GWGCWC | 6 cut(s) | 1243, 2413, 2917, 3244, 3734, 4042 |
| BbvCI | CCTCAGC | 3 cut(s) | 171, 2769, 4923 |
| BceAI | ACGGC | 5 cut(s) | 222, 248, 992, 1155, 2578 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4689, 4723 |
| BciT130I | CCWGG | 5 cut(s) | 805, 895, 1728, 3556, 4120 |
| BciVI | GTATCC | 1 cut(s) | 757 |
| BclI | TGATCA | 2 cut(s) | 1549, 4669 |
| BcnI | CCSGG | 2 cut(s) | 3976, 3977 |
| BcoDI | GTCTC | 5 cut(s) | 884, 1037, 1100, 1214, 2477 |
| BcuI | ACTAGT | 1 cut(s) | 3581 |
| BfmI | CTRYAG | 3 cut(s) | 1215, 1296, 3107 |
| BfoI | RGCGCY | 1 cut(s) | 238 |
| BfuAI | ACCTGC | 1 cut(s) | 1789 |
| BfuI | GTATCC | 1 cut(s) | 757 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 213 |
| BglII | AGATCT | 1 cut(s) | 4019 |
| BlnI | CCTAGG | 1 cut(s) | 1132 |
| BlpI | GCTNAGC | 2 cut(s) | 203, 1878 |
| Bme1390I | CCNGG | 7 cut(s) | 805, 895, 1728, 3556, 3976, 3977, 4120 |
| BmeT110I | CYCGRG | 1 cut(s) | 3975 |
| BmgBI | CACGTC | 1 cut(s) | 1524 |
| BmgT120I | GGNCC | 5 cut(s) | 1105, 3124, 3125, 3333, 3972 |
| BmiI | GGNNCC | 7 cut(s) | 236, 1957, 2246, 3126, 3974, 4835, 4909 |
| BmrFI | CCNGG | 7 cut(s) | 805, 895, 1728, 3556, 3976, 3977, 4120 |
| BmrI | ACTGGG | 3 cut(s) | 371, 2392, 3509 |
| BmsI | GCATC | 9 cut(s) | 92, 625, 710, 841, 2424, 2998, 3886, 4308, 4753 |
| BmtI | GCTAGC | 1 cut(s) | 2661 |
| BmuI | ACTGGG | 3 cut(s) | 371, 2392, 3509 |
| BpiI | GAAGAC | 4 cut(s) | 2328, 2643, 2858, 4704 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1225, 1257 |
| BpmI | CTGGAG | 1 cut(s) | 4371 |
| Bpu10I | CCTNAGC | 4 cut(s) | 171, 2330, 2769, 4923 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 203, 1878 |
| Bpu14I | TTCGAA | 2 cut(s) | 1967, 4007 |
| BpuEI | CTTGAG | 1 cut(s) | 3968 |
| BpuMI | CCSGG | 2 cut(s) | 3976, 3977 |
| Bsa29I | ATCGAT | 2 cut(s) | 1328, 4316 |
| BsaAI | YACGTR | 2 cut(s) | 1674, 3320 |
| BsaBI | GATNNNNATC | 3 cut(s) | 489, 729, 2604 |
| BsaHI | GRCGYC | 1 cut(s) | 235 |
| BsaI | GGTCTC | 1 cut(s) | 884 |
| BsaWI | WCCGGW | 3 cut(s) | 56, 1081, 4438 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 3394, 3424, 4221, 4251, 4257, 4287 |
| Bse118I | RCCGGY | 1 cut(s) | 4438 |
| Bse1I | ACTGG | 9 cut(s) | 366, 2003, 2126, 2387, 2914, 3378, 3504, 4084, 4568 |
| Bse3DI | GCAATG | 1 cut(s) | 3186 |
| Bse8I | GATNNNNATC | 3 cut(s) | 489, 729, 2604 |
| BseBI | CCWGG | 5 cut(s) | 805, 895, 1728, 3556, 4120 |
| BseCI | ATCGAT | 2 cut(s) | 1328, 4316 |
| BseGI | GGATG | 9 cut(s) | 490, 640, 725, 2038, 2169, 3013, 3643, 3655, 3862 |
| BseJI | GATNNNNATC | 3 cut(s) | 489, 729, 2604 |
| BseMI | GCAATG | 1 cut(s) | 3186 |
| BseNI | ACTGG | 9 cut(s) | 366, 2003, 2126, 2387, 2914, 3378, 3504, 4084, 4568 |
| BseRI | GAGGAG | 6 cut(s) | 727, 856, 1246, 1654, 2786, 3911 |
| BseSI | GKGCMC | 5 cut(s) | 2917, 3128, 3244, 4042, 4502 |
| BseX3I | CGGCCG | 1 cut(s) | 214 |
| BseYI | CCCAGC | 3 cut(s) | 530, 3482, 4130 |
| BsgI | GTGCAG | 4 cut(s) | 984, 1500, 2211, 3606 |
| Bsh1236I | CGCG | 1 cut(s) | 2782 |
| Bsh1285I | CGRYCG | 1 cut(s) | 217 |
| BshNI | GGYRCC | 4 cut(s) | 234, 1955, 2244, 4907 |
| BshTI | ACCGGT | 1 cut(s) | 4438 |
| BshVI | ATCGAT | 2 cut(s) | 1328, 4316 |
| BsiEI | CGRYCG | 1 cut(s) | 217 |
| BsiHKAI | GWGCWC | 6 cut(s) | 1243, 2413, 2917, 3244, 3734, 4042 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3975 |
| BsiSI | CCGG | 6 cut(s) | 57, 217, 1082, 2111, 3976, 4439 |
| BsiWI | CGTACG | 1 cut(s) | 72 |
| BslFI | GGGAC | 8 cut(s) | 1473, 1731, 2399, 2533, 2637, 3126, 4862, 4928 |
| BsmAI | GTCTC | 5 cut(s) | 884, 1037, 1100, 1214, 2477 |
| BsmFI | GGGAC | 8 cut(s) | 1473, 1731, 2399, 2533, 2637, 3126, 4862, 4928 |
| BsmI | GAATGC | 5 cut(s) | 532, 1155, 2018, 2282, 4642 |
| Bso31I | GGTCTC | 1 cut(s) | 884 |
| BsoBI | CYCGRG | 1 cut(s) | 3975 |
| Bsp119I | TTCGAA | 2 cut(s) | 1967, 4007 |
| Bsp120I | GGGCCC | 1 cut(s) | 3124 |
| Bsp1286I | GDGCHC | 8 cut(s) | 1243, 2413, 2917, 3128, 3244, 3734, 4042, 4502 |
| Bsp1407I | TGTACA | 2 cut(s) | 3488, 4289 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 203, 1878 |
| Bsp19I | CCATGG | 3 cut(s) | 43, 3128, 3285 |
| BspDI | ATCGAT | 2 cut(s) | 1328, 4316 |
| BspFNI | CGCG | 1 cut(s) | 2782 |
| BspHI | TCATGA | 2 cut(s) | 2985, 3097 |
| BspLI | GGNNCC | 7 cut(s) | 236, 1957, 2246, 3126, 3974, 4835, 4909 |
| BspMAI | CTGCAG | 2 cut(s) | 1300, 3111 |
| BspMI | ACCTGC | 1 cut(s) | 1789 |
| BspOI | GCTAGC | 1 cut(s) | 2661 |
| BspPI | GGATC | 7 cut(s) | 569, 666, 1017, 1274, 1699, 2204, 2594 |
| BspQI | GCTCTTC | 2 cut(s) | 932, 3772 |
| BspT104I | TTCGAA | 2 cut(s) | 1967, 4007 |
| BspT107I | GGYRCC | 4 cut(s) | 234, 1955, 2244, 4907 |
| BspTNI | GGTCTC | 1 cut(s) | 884 |
| BsrDI | GCAATG | 1 cut(s) | 3186 |
| BsrFI | RCCGGY | 1 cut(s) | 4438 |
| BsrGI | TGTACA | 2 cut(s) | 3488, 4289 |
| BsrI | ACTGG | 9 cut(s) | 366, 2003, 2126, 2387, 2914, 3378, 3504, 4084, 4568 |
| BssAI | RCCGGY | 1 cut(s) | 4438 |
| BssNI | GRCGYC | 1 cut(s) | 235 |
| BssSI | CACGAG | 2 cut(s) | 182, 2214 |
| BssT1I | CCWWGG | 7 cut(s) | 43, 157, 1132, 2159, 3128, 3285, 3465 |
| Bst2BI | CACGAG | 2 cut(s) | 182, 2214 |
| Bst2UI | CCWGG | 5 cut(s) | 805, 895, 1728, 3556, 4120 |
| Bst6I | CTCTTC | 6 cut(s) | 932, 1297, 1338, 2820, 3772, 4532 |
| BstACI | GRCGYC | 1 cut(s) | 235 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1304, 3729 |
| BstAUI | TGTACA | 2 cut(s) | 3488, 4289 |
| BstBAI | YACGTR | 2 cut(s) | 1674, 3320 |
| BstBI | TTCGAA | 2 cut(s) | 1967, 4007 |
| BstC8I | GCNNGC | 9 cut(s) | 1108, 1153, 1602, 2378, 2659, 2663, 3561, 3597, 3913 |
| BstDSI | CCRYGG | 3 cut(s) | 43, 3128, 3285 |
| BstEII | GGTNACC | 1 cut(s) | 694 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 185 |
| BstF5I | GGATG | 9 cut(s) | 490, 640, 725, 2038, 2169, 3013, 3643, 3655, 3862 |
| BstFNI | CGCG | 1 cut(s) | 2782 |
| BstH2I | RGCGCY | 1 cut(s) | 238 |
| BstHHI | GCGC | 1 cut(s) | 237 |
| BstMAI | GTCTC | 5 cut(s) | 884, 1037, 1100, 1214, 2477 |
| BstMCI | CGRYCG | 1 cut(s) | 217 |
| BstNI | CCWGG | 5 cut(s) | 805, 895, 1728, 3556, 4120 |
| BstNSI | RCATGY | 7 cut(s) | 1155, 2469, 2669, 3269, 4164, 4822, 4968 |
| BstPI | GGTNACC | 1 cut(s) | 694 |
| BstSCI | CCNGG | 7 cut(s) | 803, 893, 1726, 3554, 3974, 3975, 4118 |
| BstSFI | CTRYAG | 3 cut(s) | 1215, 1296, 3107 |
| BstSLI | GKGCMC | 5 cut(s) | 2917, 3128, 3244, 4042, 4502 |
| BstSNI | TACGTA | 1 cut(s) | 3320 |
| BstUI | CGCG | 1 cut(s) | 2782 |
| BstV2I | GAAGAC | 4 cut(s) | 2328, 2643, 2858, 4704 |
| BstX2I | RGATCY | 2 cut(s) | 1009, 4019 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2575, 3385 |
| BstYI | RGATCY | 2 cut(s) | 1009, 4019 |
| BstZI | CGGCCG | 1 cut(s) | 214 |
| Bsu15I | ATCGAT | 2 cut(s) | 1328, 4316 |
| BsuI | GTATCC | 1 cut(s) | 757 |
| BsuTUI | ATCGAT | 2 cut(s) | 1328, 4316 |
| BtgI | CCRYGG | 3 cut(s) | 43, 3128, 3285 |
| BtrI | CACGTC | 1 cut(s) | 1524 |
| BtsCI | GGATG | 9 cut(s) | 490, 640, 725, 2038, 2169, 3013, 3643, 3655, 3862 |
| BtsI | GCAGTG | 3 cut(s) | 1305, 4042, 4143 |
| BtsIMutI | CAGTG | 8 cut(s) | 1305, 1517, 1577, 1992, 2380, 3385, 4042, 4143 |
| BveI | ACCTGC | 1 cut(s) | 1789 |
| Cac8I | GCNNGC | 9 cut(s) | 1108, 1153, 1602, 2378, 2659, 2663, 3561, 3597, 3913 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1378, 1628, 2522, 4563 |
| CciI | TCATGA | 2 cut(s) | 2985, 3097 |
| CfoI | GCGC | 1 cut(s) | 237 |
| Cfr10I | RCCGGY | 1 cut(s) | 4438 |
| Cfr13I | GGNCC | 5 cut(s) | 1105, 3124, 3125, 3333, 3972 |
| Cfr9I | CCCGGG | 1 cut(s) | 3975 |
| ClaI | ATCGAT | 2 cut(s) | 1328, 4316 |
| CseI | GACGC | 4 cut(s) | 2788, 3221, 4175, 4644 |
| CspAI | ACCGGT | 1 cut(s) | 4438 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4673, 4708 |
| DinI | GGCGCC | 1 cut(s) | 236 |
| DraI | TTTAAA | 5 cut(s) | 1407, 2233, 2862, 3369, 4719 |
| DraIII | CACNNNGTG | 1 cut(s) | 2417 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1528 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1528 |
| EaeI | YGGCCR | 5 cut(s) | 214, 1676, 2367, 2746, 2885 |
| EagI | CGGCCG | 1 cut(s) | 214 |
| Eam1104I | CTCTTC | 6 cut(s) | 932, 1297, 1338, 2820, 3772, 4532 |
| EarI | CTCTTC | 6 cut(s) | 932, 1297, 1338, 2820, 3772, 4532 |
| EclXI | CGGCCG | 1 cut(s) | 214 |
| Eco105I | TACGTA | 1 cut(s) | 3320 |
| Eco130I | CCWWGG | 7 cut(s) | 43, 157, 1132, 2159, 3128, 3285, 3465 |
| Eco147I | AGGCCT | 1 cut(s) | 3575 |
| Eco24I | GRGCYC | 1 cut(s) | 3128 |
| Eco31I | GGTCTC | 1 cut(s) | 884 |
| Eco32I | GATATC | 1 cut(s) | 1206 |
| Eco52I | CGGCCG | 1 cut(s) | 214 |
| Eco88I | CYCGRG | 1 cut(s) | 3975 |
| Eco91I | GGTNACC | 1 cut(s) | 694 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 185 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3972 |
| EcoO65I | GGTNACC | 1 cut(s) | 694 |
| EcoRI | GAATTC | 5 cut(s) | 1419, 2512, 3520, 3649, 4777 |
| EcoRII | CCWGG | 5 cut(s) | 803, 893, 1726, 3554, 4118 |
| EcoRV | GATATC | 1 cut(s) | 1206 |
| EcoT14I | CCWWGG | 7 cut(s) | 43, 157, 1132, 2159, 3128, 3285, 3465 |
| EcoT22I | ATGCAT | 2 cut(s) | 1157, 4617 |
| EcoT38I | GRGCYC | 1 cut(s) | 3128 |
| EgeI | GGCGCC | 1 cut(s) | 236 |
| EheI | GGCGCC | 1 cut(s) | 236 |
| ErhI | CCWWGG | 7 cut(s) | 43, 157, 1132, 2159, 3128, 3285, 3465 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2960, 2992, 3048, 3080 |
| FaqI | GGGAC | 8 cut(s) | 1473, 1731, 2399, 2533, 2637, 3126, 4862, 4928 |
| FauI | CCCGC | 2 cut(s) | 1115, 3920 |
| FbaI | TGATCA | 2 cut(s) | 1549, 4669 |
| FokI | GGATG | 9 cut(s) | 497, 647, 732, 2045, 2176, 3020, 3642, 3650, 3869 |
| FriOI | GRGCYC | 1 cut(s) | 3128 |
| GlaI | GCGC | 1 cut(s) | 236 |
| GsaI | CCCAGC | 3 cut(s) | 534, 3486, 4134 |
| GsuI | CTGGAG | 1 cut(s) | 4371 |
| HaeII | RGCGCY | 1 cut(s) | 238 |
| HapII | CCGG | 6 cut(s) | 57, 217, 1082, 2111, 3976, 4439 |
| HgaI | GACGC | 4 cut(s) | 2788, 3221, 4175, 4644 |
| HhaI | GCGC | 1 cut(s) | 237 |
| Hin1I | GRCGYC | 1 cut(s) | 235 |
| Hin6I | GCGC | 1 cut(s) | 235 |
| HinP1I | GCGC | 1 cut(s) | 235 |
| HincII | GTYRAC | 2 cut(s) | 2778, 4659 |
| HindII | GTYRAC | 2 cut(s) | 2778, 4659 |
| HindIII | AAGCTT | 1 cut(s) | 4341 |
| HpaII | CCGG | 6 cut(s) | 57, 217, 1082, 2111, 3976, 4439 |
| HphI | GGTGA | 8 cut(s) | 46, 688, 785, 983, 1096, 1524, 2129, 4772 |
| Hpy99I | CGWCG | 1 cut(s) | 4413 |
| HpyCH4IV | ACGT | 5 cut(s) | 1523, 1673, 3319, 4408, 4606 |
| HpySE526I | ACGT | 5 cut(s) | 1523, 1673, 3319, 4408, 4606 |
| Hsp92I | GRCGYC | 1 cut(s) | 235 |
| HspAI | GCGC | 1 cut(s) | 235 |
| KasI | GGCGCC | 1 cut(s) | 234 |
| KpnI | GGTACC | 3 cut(s) | 1959, 2248, 4911 |
| Ksp22I | TGATCA | 2 cut(s) | 1549, 4669 |
| LguI | GCTCTTC | 2 cut(s) | 932, 3772 |
| LmnI | GCTCC | 5 cut(s) | 159, 1375, 2408, 2959, 3743 |
| LweI | GCATC | 9 cut(s) | 92, 625, 710, 841, 2424, 2998, 3886, 4308, 4753 |
| MaeII | ACGT | 5 cut(s) | 1523, 1673, 3319, 4408, 4606 |
| MfeI | CAATTG | 2 cut(s) | 4883, 4969 |
| MflI | RGATCY | 2 cut(s) | 1009, 4019 |
| MhlI | GDGCHC | 8 cut(s) | 1243, 2413, 2917, 3128, 3244, 3734, 4042, 4502 |
| MlsI | TGGCCA | 4 cut(s) | 1678, 2369, 2748, 2887 |
| MluI | ACGCGT | 1 cut(s) | 2780 |
| MluNI | TGGCCA | 4 cut(s) | 1678, 2369, 2748, 2887 |
| Mly113I | GGCGCC | 1 cut(s) | 235 |
| MlyI | GAGTC | 4 cut(s) | 1495, 1651, 2285, 3362 |
| MmeI | TCCRAC | 6 cut(s) | 1139, 1479, 2068, 3198, 3381, 3416 |
| Mox20I | TGGCCA | 4 cut(s) | 1678, 2369, 2748, 2887 |
| Mph1103I | ATGCAT | 2 cut(s) | 1157, 4617 |
| MroXI | GAANNNNTTC | 3 cut(s) | 32, 286, 927 |
| MscI | TGGCCA | 4 cut(s) | 1678, 2369, 2748, 2887 |
| MslI | CAYNNNNRTG | 8 cut(s) | 1522, 1557, 2573, 2990, 3066, 4249, 4285, 4761 |
| Msp20I | TGGCCA | 4 cut(s) | 1678, 2369, 2748, 2887 |
| MspA1I | CMGCKG | 5 cut(s) | 689, 968, 2561, 3078, 4170 |
| MspI | CCGG | 6 cut(s) | 57, 217, 1082, 2111, 3976, 4439 |
| MspR9I | CCNGG | 7 cut(s) | 805, 895, 1728, 3556, 3976, 3977, 4120 |
| MunI | CAATTG | 2 cut(s) | 4883, 4969 |
| Mva1269I | GAATGC | 5 cut(s) | 532, 1155, 2018, 2282, 4642 |
| MvaI | CCWGG | 5 cut(s) | 805, 895, 1728, 3556, 4120 |
| MvnI | CGCG | 1 cut(s) | 2782 |
| NarI | GGCGCC | 1 cut(s) | 235 |
| NciI | CCSGG | 2 cut(s) | 3976, 3977 |
| NcoI | CCATGG | 3 cut(s) | 43, 3128, 3285 |
| NheI | GCTAGC | 1 cut(s) | 2657 |
| NlaIV | GGNNCC | 7 cut(s) | 236, 1957, 2246, 3126, 3974, 4835, 4909 |
| NmeAIII | GCCGAG | 1 cut(s) | 192 |
| NmuCI | GTSAC | 9 cut(s) | 560, 694, 773, 1530, 2117, 2178, 2524, 3307, 4278 |
| NsiI | ATGCAT | 2 cut(s) | 1157, 4617 |
| NspI | RCATGY | 7 cut(s) | 1155, 2469, 2669, 3269, 4164, 4822, 4968 |
| NspV | TTCGAA | 2 cut(s) | 1967, 4007 |
| OliI | CACNNNNGTG | 2 cut(s) | 1522, 4285 |
| PaeI | GCATGC | 1 cut(s) | 1155 |
| PagI | TCATGA | 2 cut(s) | 2985, 3097 |
| PceI | AGGCCT | 1 cut(s) | 3575 |
| PciI | ACATGT | 3 cut(s) | 2465, 3265, 4818 |
| PciSI | GCTCTTC | 2 cut(s) | 932, 3772 |
| PctI | GAATGC | 5 cut(s) | 532, 1155, 2018, 2282, 4642 |
| PdmI | GAANNNNTTC | 3 cut(s) | 32, 286, 927 |
| Pfl23II | CGTACG | 1 cut(s) | 72 |
| PflFI | GACNNNGTC | 1 cut(s) | 1889 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 584, 1998 |
| PinAI | ACCGGT | 1 cut(s) | 4438 |
| PleI | GAGTC | 4 cut(s) | 1494, 1650, 2284, 3361 |
| PluTI | GGCGCC | 1 cut(s) | 238 |
| PpsI | GAGTC | 4 cut(s) | 1494, 1650, 2284, 3361 |
| Ppu21I | YACGTR | 2 cut(s) | 1674, 3320 |
| PscI | ACATGT | 3 cut(s) | 2465, 3265, 4818 |
| PshBI | ATTAAT | 4 cut(s) | 798, 918, 1056, 1857 |
| Psp6I | CCWGG | 5 cut(s) | 803, 893, 1726, 3554, 4118 |
| PspEI | GGTNACC | 1 cut(s) | 694 |
| PspFI | CCCAGC | 3 cut(s) | 530, 3482, 4130 |
| PspGI | CCWGG | 5 cut(s) | 803, 893, 1726, 3554, 4118 |
| PspLI | CGTACG | 1 cut(s) | 72 |
| PspN4I | GGNNCC | 7 cut(s) | 236, 1957, 2246, 3126, 3974, 4835, 4909 |
| PspOMI | GGGCCC | 1 cut(s) | 3124 |
| PspPI | GGNCC | 5 cut(s) | 1105, 3124, 3125, 3333, 3972 |
| PstI | CTGCAG | 2 cut(s) | 1300, 3111 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1378, 1628, 2522, 4563 |
| PsuI | RGATCY | 2 cut(s) | 1009, 4019 |
| PsyI | GACNNNGTC | 1 cut(s) | 1889 |
| PvuII | CAGCTG | 4 cut(s) | 689, 968, 2561, 3078 |
| RseI | CAYNNNNRTG | 8 cut(s) | 1522, 1557, 2573, 2990, 3066, 4249, 4285, 4761 |
| SapI | GCTCTTC | 2 cut(s) | 932, 3772 |
| Sau96I | GGNCC | 5 cut(s) | 1105, 3124, 3125, 3333, 3972 |
| SchI | GAGTC | 4 cut(s) | 1495, 1651, 2285, 3362 |
| ScrFI | CCNGG | 7 cut(s) | 805, 895, 1728, 3556, 3976, 3977, 4120 |
| SduI | GDGCHC | 8 cut(s) | 1243, 2413, 2917, 3128, 3244, 3734, 4042, 4502 |
| SfaNI | GCATC | 9 cut(s) | 92, 625, 710, 841, 2424, 2998, 3886, 4308, 4753 |
| SfcI | CTRYAG | 3 cut(s) | 1215, 1296, 3107 |
| SfoI | GGCGCC | 1 cut(s) | 236 |
| SfuI | TTCGAA | 2 cut(s) | 1967, 4007 |
| SmaI | CCCGGG | 1 cut(s) | 3977 |
| SmiI | ATTTAAAT | 1 cut(s) | 1407 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 1522, 1557, 2573, 2990, 3066, 4249, 4285, 4761 |
| SmlI | CTYRAG | 1 cut(s) | 3947 |
| SmoI | CTYRAG | 1 cut(s) | 3947 |
| SnaBI | TACGTA | 1 cut(s) | 3320 |
| SpeI | ACTAGT | 1 cut(s) | 3581 |
| SphI | GCATGC | 1 cut(s) | 1155 |
| SseBI | AGGCCT | 1 cut(s) | 3575 |
| SspDI | GGCGCC | 1 cut(s) | 234 |
| SspI | AATATT | 2 cut(s) | 2893, 3203 |
| StuI | AGGCCT | 1 cut(s) | 3575 |
| StyD4I | CCNGG | 7 cut(s) | 803, 893, 1726, 3554, 3974, 3975, 4118 |
| StyI | CCWWGG | 7 cut(s) | 43, 157, 1132, 2159, 3128, 3285, 3465 |
| SwaI | ATTTAAAT | 1 cut(s) | 1407 |
| TaiI | ACGT | 5 cut(s) | 1526, 1676, 3322, 4411, 4609 |
| TaqII | GACCGA | 1 cut(s) | 1914 |
| TatI | WGTACW | 5 cut(s) | 3488, 3920, 4237, 4273, 4289 |
| TauI | GCSGC | 4 cut(s) | 80, 83, 197, 210 |
| TscAI | CASTG | 8 cut(s) | 1305, 1524, 1584, 1999, 2387, 3385, 4049, 4143 |
| TseFI | GTSAC | 9 cut(s) | 560, 694, 773, 1530, 2117, 2178, 2524, 3307, 4278 |
| Tsp45I | GTSAC | 9 cut(s) | 560, 694, 773, 1530, 2117, 2178, 2524, 3307, 4278 |
| TspGWI | ACGGA | 1 cut(s) | 4930 |
| TspMI | CCCGGG | 1 cut(s) | 3975 |
| TspRI | CASTG | 8 cut(s) | 1305, 1524, 1584, 1999, 2387, 3385, 4049, 4143 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1889 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 584, 1998 |
| VneI | GTGCAC | 3 cut(s) | 2913, 3240, 4038 |
| VspI | ATTAAT | 4 cut(s) | 798, 918, 1056, 1857 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 185 |
| XbaI | TCTAGA | 3 cut(s) | 428, 1411, 3683 |
| XceI | RCATGY | 7 cut(s) | 1155, 2469, 2669, 3269, 4164, 4822, 4968 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 811 |
| XmaI | CCCGGG | 1 cut(s) | 3975 |
| XmaJI | CCTAGG | 1 cut(s) | 1132 |
| XmnI | GAANNNNTTC | 3 cut(s) | 32, 286, 927 |
| Zsp2I | ATGCAT | 2 cut(s) | 1157, 4617 |