Rroxscaffold_1G00029280

DDT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003576
Physical Location & Seq
Forward (+)
37833226 .. 37834439
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029280.1

Sequence Viewer

Length: 1116 bp
ATGAGCATGTGTTCTATCTTGTGGGACAAATCTGGTTTTTGTGATGATGAATCTGCATTTAATTACTATCACAGAGATGATCTAAACAAGATTATTGAAGTGCTAAGGTCTTCAGAATTTTCCTATGGTGGGATATTATTGGGAATCTATAAGCACTGGGACATTCCTACTACCTTTAATGGAGCAATTAGTAGCAAGCCCCTGGACCAATTGGAATTTTCAGAAACAGGTGATGCTAAAAATGAGACTCATGAGGATAGAAAACTGCAAGAGAAGTTTTGTAATCTTGTTTCTGATGCTTCAAATTCTGTTAAAGTGCTGAGAAGGACTGTCATTCAGGATGATTCAAATAATCTTGCTGATAATTCAAATCAATCAGATTTGGTCGGAAAACTTCATCCTGAAGTCTGTTCTTTGACATCTACTTGCTTAGATGTCAGACAAGAGAGCAATGGTTTTATTGATCTTGGAAAAATTTCATCTGCTATAACCACTAGAAAAGAGGGCACTTCAGAAGTGGATGGTGGAATTGATTACATAAACTACTACAGTTTTGGCCAAATTGCTTCATCTGTTGCAGAGGAGTTGTCTAAATCATCAGAAAAGAATAAGGAAGGTGCACTAAATACAGTAGATGAAATAATATCTGCGCAGATGAAGACCATTATAAAAAAATCTTCCAAGTTTTCCTGGCCAAATATTGAGAACTTAAATATAGATGTGCAGAAAGAAAAATGTGGGTGGTGCTTTTCTTGCAAATATCCTGCTGATGATAGGGATTGCTTGCTTATCATGAGTAAGCTGCCTTTACCGGATGTTTCCAAGACTGATGTAGTTGGACTTCAATTGAAAAAAATTCCCAAAGATCATCTTAATGATGTCAGCTGTCAAATTTTGTCCATTCATGATCGCCTGCTTGGGCTTCTGTTGGGTCCGTGGTTGAACCCCCATCATACAGAATGCTGGCGGAATAGTCTTCTTAATGCATGCGATCTTGCCTCTGTTAAGCATTTACTGCTCCTTGTAAGCATTTTCTCTATAAAATTTACTGCAGCTGTCAATTCACCTGCTAAACATTTATGGTGGCCTAACATTAATCTTTTAATAGAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031010 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

371

Amino Acids

41.59

Weight (kDa)

5.42

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 668
AarI CACCTGC 1 cut(s) 1075
Acc16I TGCGCA 1 cut(s) 651
Acc36I ACCTGC 1 cut(s) 1075
AciI CCGC 1 cut(s) 967
AcoI YGGCCR 2 cut(s) 556, 692
AcsI RAATTY 7 cut(s) 116, 215, 304, 474, 855, 891, 1043
AcuI CTGAAG 3 cut(s) 96, 423, 495
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 7 cut(s) 98, 303, 348, 369, 845, 850, 943
AjnI CCWGG 2 cut(s) 201, 689
AluBI AGCT 3 cut(s) 802, 885, 1055
AluI AGCT 3 cut(s) 802, 885, 1055
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 1 cut(s) 239
Alw44I GTGCAC 1 cut(s) 618
AoxI GGCC 3 cut(s) 556, 692, 1085
ApaLI GTGCAC 1 cut(s) 618
ApeKI GCWGC 2 cut(s) 802, 1052
ApoI RAATTY 7 cut(s) 116, 215, 304, 474, 855, 891, 1043
AseI ATTAAT 1 cut(s) 1095
Asp700I GAANNNNTTC 1 cut(s) 475
AspLEI GCGC 1 cut(s) 652
AspS9I GGNCC 2 cut(s) 205, 932
AsuHPI GGTGA 2 cut(s) 242, 1056
AvaII GGWCC 2 cut(s) 205, 932
BaeGI GKGCMC 2 cut(s) 509, 622
BalI TGGCCA 2 cut(s) 558, 694
BarI GAAGNNNNNNTAC 2 cut(s) 825, 857
BbsI GAAGAC 3 cut(s) 102, 665, 968
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 2 cut(s) 789, 1064
BccI CCATC 2 cut(s) 515, 957
BciT130I CCWGG 2 cut(s) 203, 691
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 2 cut(s) 547, 1050
BfuAI ACCTGC 1 cut(s) 1075
BisI GCNGC 2 cut(s) 803, 1053
BlsI GCNGC 2 cut(s) 804, 1054
Bme1390I CCNGG 2 cut(s) 203, 691
Bme18I GGWCC 2 cut(s) 205, 932
BmgT120I GGNCC 2 cut(s) 205, 932
BmiI GGNNCC 1 cut(s) 933
BmrFI CCNGG 2 cut(s) 203, 691
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 2 cut(s) 223, 286
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 3 cut(s) 102, 665, 968
Bpu10I CCTNAGC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 201, 935
BsaWI WCCGGW 1 cut(s) 811
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 457
BseBI CCWGG 2 cut(s) 203, 691
BseDI CCNNGG 2 cut(s) 201, 935
BseGI GGATG 4 cut(s) 346, 397, 526, 820
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 596
BseSI GKGCMC 2 cut(s) 509, 622
BseXI GCAGC 2 cut(s) 789, 1064
BsgI GTGCAG 1 cut(s) 743
BshFI GGCC 3 cut(s) 558, 694, 1087
BsiHKAI GWGCWC 1 cut(s) 622
BsiSI CCGG 1 cut(s) 812
BslFI GGGAC 2 cut(s) 38, 173
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 2 cut(s) 38, 173
BsmI GAATGC 1 cut(s) 965
BsnI GGCC 3 cut(s) 558, 694, 1087
Bsp1286I GDGCHC 2 cut(s) 509, 622
Bsp143I GATC 5 cut(s) 79, 463, 865, 907, 991
BspACI CCGC 1 cut(s) 967
BspANI GGCC 3 cut(s) 558, 694, 1087
BspCNI CTCAG 1 cut(s) 312
BspHI TCATGA 3 cut(s) 250, 792, 904
BspLI GGNNCC 1 cut(s) 933
BspMAI CTGCAG 1 cut(s) 1054
BspMI ACCTGC 1 cut(s) 1075
BsrDI GCAATG 1 cut(s) 457
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 201, 935
BssMI GATC 5 cut(s) 79, 463, 865, 907, 991
Bst2UI CCWGG 2 cut(s) 203, 691
Bst4CI ACNGT 3 cut(s) 331, 551, 631
BstAPI GCANNNNNTGC 1 cut(s) 1015
BstC8I GCNNGC 5 cut(s) 197, 785, 914, 965, 988
BstDEI CTNAG 3 cut(s) 104, 320, 430
BstDSI CCRYGG 1 cut(s) 935
BstF5I GGATG 4 cut(s) 346, 397, 526, 820
BstHHI GCGC 1 cut(s) 652
BstKTI GATC 5 cut(s) 82, 466, 868, 910, 994
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 5 cut(s) 79, 463, 865, 907, 991
BstMWI GCNNNNNNNGC 2 cut(s) 753, 1015
BstNI CCWGG 2 cut(s) 203, 691
BstNSI RCATGY 2 cut(s) 10, 990
BstSCI CCNGG 2 cut(s) 201, 689
BstSFI CTRYAG 2 cut(s) 547, 1050
BstSLI GKGCMC 2 cut(s) 509, 622
BstV1I GCAGC 2 cut(s) 789, 1064
BstV2I GAAGAC 3 cut(s) 102, 665, 968
BsuRI GGCC 3 cut(s) 558, 694, 1087
BtgI CCRYGG 1 cut(s) 935
BtsCI GGATG 4 cut(s) 346, 397, 526, 820
BtsIMutI CAGTG 1 cut(s) 154
BveI ACCTGC 1 cut(s) 1075
Cac8I GCNNGC 5 cut(s) 197, 785, 914, 965, 988
CciI TCATGA 3 cut(s) 250, 792, 904
CfoI GCGC 1 cut(s) 652
Cfr13I GGNCC 2 cut(s) 205, 932
CviAII CATG 5 cut(s) 7, 251, 793, 905, 987
CviJI RGCY 8 cut(s) 199, 558, 694, 802, 885, 922, 1055, 1087
CviKI_1 RGCY 8 cut(s) 199, 558, 694, 802, 885, 922, 1055, 1087
DdeI CTNAG 3 cut(s) 104, 320, 430
DpnI GATC 5 cut(s) 81, 465, 867, 909, 993
DpnII GATC 5 cut(s) 79, 463, 865, 907, 991
EaeI YGGCCR 2 cut(s) 556, 692
EciI GGCGGA 1 cut(s) 982
Eco47I GGWCC 2 cut(s) 205, 932
Eco57I CTGAAG 3 cut(s) 96, 423, 495
EcoRII CCWGG 2 cut(s) 201, 689
EcoT22I ATGCAT 1 cut(s) 988
FaeI CATG 5 cut(s) 10, 254, 796, 908, 990
FalI AAGNNNNNCTT 2 cut(s) 855, 887
FaqI GGGAC 2 cut(s) 38, 173
FatI CATG 5 cut(s) 6, 250, 792, 904, 986
Fnu4HI GCNGC 2 cut(s) 803, 1053
FokI GGATG 4 cut(s) 353, 384, 533, 827
Fsp4HI GCNGC 2 cut(s) 803, 1053
FspBI CTAG 1 cut(s) 495
FspI TGCGCA 1 cut(s) 651
GlaI GCGC 1 cut(s) 651
GluI GCNGC 2 cut(s) 803, 1053
HaeIII GGCC 3 cut(s) 558, 694, 1087
HapII CCGG 1 cut(s) 812
HhaI GCGC 1 cut(s) 652
Hin1II CATG 5 cut(s) 10, 254, 796, 908, 990
Hin6I GCGC 1 cut(s) 650
HinP1I GCGC 1 cut(s) 650
HinfI GANTC 4 cut(s) 50, 144, 247, 344
HpaII CCGG 1 cut(s) 812
HphI GGTGA 2 cut(s) 242, 1056
Hpy166II GTNNAC 1 cut(s) 620
Hpy188I TCNGA 8 cut(s) 115, 223, 295, 379, 389, 440, 514, 601
Hpy188III TCNNGA 5 cut(s) 251, 338, 401, 793, 905
Hpy8I GTNNAC 1 cut(s) 620
HpyAV CCTTC 2 cut(s) 318, 608
HpyCH4III ACNGT 3 cut(s) 331, 551, 631
HpyCH4V TGCA 8 cut(s) 56, 268, 578, 620, 724, 756, 986, 1052
HpyF10VI GCNNNNNNNGC 2 cut(s) 753, 1015
HpyF3I CTNAG 3 cut(s) 104, 320, 430
Hsp92II CATG 5 cut(s) 10, 254, 796, 908, 990
HspAI GCGC 1 cut(s) 650
Kzo9I GATC 5 cut(s) 79, 463, 865, 907, 991
LmnI GCTCC 2 cut(s) 182, 1023
Lsp1109I GCAGC 2 cut(s) 789, 1064
LweI GCATC 2 cut(s) 223, 286
MaeI CTAG 1 cut(s) 495
MalI GATC 5 cut(s) 81, 465, 867, 909, 993
MboI GATC 5 cut(s) 79, 463, 865, 907, 991
MboII GAAGA 4 cut(s) 102, 669, 670, 968
MfeI CAATTG 2 cut(s) 209, 845
MhlI GDGCHC 2 cut(s) 509, 622
MlsI TGGCCA 2 cut(s) 558, 694
MluNI TGGCCA 2 cut(s) 558, 694
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 2 cut(s) 367, 817
MnlI CCTC 4 cut(s) 247, 496, 574, 1009
Mox20I TGGCCA 2 cut(s) 558, 694
Mph1103I ATGCAT 1 cut(s) 988
MroXI GAANNNNTTC 1 cut(s) 475
MscI TGGCCA 2 cut(s) 558, 694
MseI TTAA 9 cut(s) 60, 177, 312, 710, 873, 981, 1005, 1095, 1103
MslI CAYNNNNRTG 2 cut(s) 75, 873
Msp20I TGGCCA 2 cut(s) 558, 694
MspA1I CMGCKG 2 cut(s) 885, 1055
MspI CCGG 1 cut(s) 812
MspR9I CCNGG 2 cut(s) 203, 691
MunI CAATTG 2 cut(s) 209, 845
Mva1269I GAATGC 1 cut(s) 965
MvaI CCWGG 2 cut(s) 203, 691
MwoI GCNNNNNNNGC 2 cut(s) 753, 1015
NdeII GATC 5 cut(s) 79, 463, 865, 907, 991
NlaIII CATG 5 cut(s) 10, 254, 796, 908, 990
NlaIV GGNNCC 1 cut(s) 933
NsbI TGCGCA 1 cut(s) 651
NsiI ATGCAT 1 cut(s) 988
NspI RCATGY 2 cut(s) 10, 990
PaeI GCATGC 1 cut(s) 990
PagI TCATGA 3 cut(s) 250, 792, 904
PaqCI CACCTGC 1 cut(s) 1075
PctI GAATGC 1 cut(s) 965
PdmI GAANNNNTTC 1 cut(s) 475
PfeI GAWTC 3 cut(s) 50, 144, 344
PkrI GCNGC 2 cut(s) 804, 1054
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PshBI ATTAAT 1 cut(s) 1095
PsiI TTATAA 1 cut(s) 668
Psp6I CCWGG 2 cut(s) 201, 689
PspGI CCWGG 2 cut(s) 201, 689
PspN4I GGNNCC 1 cut(s) 933
PspPI GGNCC 2 cut(s) 205, 932
PstI CTGCAG 1 cut(s) 1054
PvuII CAGCTG 2 cut(s) 885, 1055
RseI CAYNNNNRTG 2 cut(s) 75, 873
SaqAI TTAA 9 cut(s) 60, 177, 312, 710, 873, 981, 1005, 1095, 1103
SatI GCNGC 2 cut(s) 803, 1053
Sau3AI GATC 5 cut(s) 79, 463, 865, 907, 991
Sau96I GGNCC 2 cut(s) 205, 932
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 2 cut(s) 203, 691
SduI GDGCHC 2 cut(s) 509, 622
SetI ASST 8 cut(s) 110, 176, 232, 619, 804, 887, 1057, 1069
SfaNI GCATC 2 cut(s) 223, 286
SfcI CTRYAG 2 cut(s) 547, 1050
SinI GGWCC 2 cut(s) 205, 932
SmiMI CAYNNNNRTG 2 cut(s) 75, 873
SphI GCATGC 1 cut(s) 990
SsiI CCGC 1 cut(s) 967
SspI AATATT 1 cut(s) 700
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 2 cut(s) 201, 689
TaaI ACNGT 3 cut(s) 331, 551, 631
TfiI GAWTC 3 cut(s) 50, 144, 344
Tru1I TTAA 9 cut(s) 60, 177, 312, 710, 873, 981, 1005, 1095, 1103
Tru9I TTAA 9 cut(s) 60, 177, 312, 710, 873, 981, 1005, 1095, 1103
TscAI CASTG 1 cut(s) 161
TseI GCWGC 2 cut(s) 802, 1052
TspDTI ATGAA 7 cut(s) 63, 386, 468, 558, 651, 671, 893
TspGWI ACGGA 1 cut(s) 924
TspRI CASTG 1 cut(s) 161
VneI GTGCAC 1 cut(s) 618
VpaK11BI GGWCC 2 cut(s) 205, 932
VspI ATTAAT 1 cut(s) 1095
XapI RAATTY 7 cut(s) 116, 215, 304, 474, 855, 891, 1043
XceI RCATGY 2 cut(s) 10, 990
XmnI GAANNNNTTC 1 cut(s) 475
XspI CTAG 1 cut(s) 495
Zsp2I ATGCAT 1 cut(s) 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.