pycom11g16390

DDT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003576
Physical Location & Seq
Forward (+)
17987012 .. 17990652
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g16390.1

Sequence Viewer

Length: 2655 bp
ATGGAGTTCGTGGGAAGAAGTGTGAAGAAGGAGCTCAAAGGCCACGGTTTTTTCGCCGGAACTGTGAAATCGTACGCCGCCACATCTGGGTTGTTCGAGGTCGTCTATGAAGATGGAAATACTGAGGAGTTGAGCTTCGATGAGGTCTCTTTGCTCCTTGGTTGCGGTGCTGAGGTTGACCTCGTGGAGGCCGCCGCCAAACCGGGCCGAAAGCCTAAAAAACGGCGGCGAATTGAAAGGAAGCTAGAAATTCGAGGTAATGCTGCTCTTGGAAATGCTTCTGGGTTTGATGGGGATTTGAATGAAAATTGTAATTTGAGTGATGGGTCTGAGGGAAAATTGGAAGTTGAACAGAGGTTTGGAGGGAATTTGAGGGAAAATGTGGCGGTTAGTGGGAATTTGAATGAAAATGTTGATTCTAGAAATGTAGTGAATAAGACCCTAGAACAGGGAACTAGGTTGATTACTAATGGGGATGTGAATCGAGTAGATAATTTGAAAAATGGGATTGATTTGAATGCTGGGTTTAATTTGAATTTGAATGATGGATGTGACTTGACTGTTGATTCAAATGTTGGCATGAAGGGAGTTGTGGAGAAAAGAGATTGTATTGATTTGAATTTGGATGCAAATGATGACTGTGTTGAGAATCGGAATGGGGATATTAGTTTGGGCGGTTCAACTTTGGTTATCCATGGAACCCAGAAGAGGGGCTGCGATTTCGATCTCAATTTAGAAGTTAATGAGGAATTTAAGGATACAGAATGTGACTGTGAAGAAAAATTTAAGGTTAATCCCAAGTTTGAGATGGTTGAAGGAAGTCTAGAAAAAGAGAGGAGTGGAGATGCTGAAGAAAAGATTACCGAAGATGCTAATTCTAATGGGACGTGTAAGGAAGTGTATATTGATATTAATGAAGATGTTCCCATGATGAACGTTGATGACCCCATTGACTGTGCAGCTGGTGAACGACTTGATGATAAAAATCGTTGTTCTAGTGGAGATTTGAAGGCTGAGAATTCGCTTGGGATTTTTGACACTGGCAGCATTAAAGATAGTGGATTGGTGGAAGTTCTGGTAAAAGATAGTCTCTCTGAGGCTCGCACTCCAAGGATTCATGGAAACCTAGGCGATTCAAGAAGTCCATGCATTAAAAAAAGTAGCCGTAGAAAGAGGAGAAAACTACAGGATAATTTGAAATCTACGACTACAGAGACAGTTTTGAGGCGAAGTGCTCGTAGAGGTTCTGCTCTAAATCATGTTTCTGTCAGTGATCCATTGTCCTCTTCTGAGGAAAAACCAGCGATTTCTGGTTGTGAAGAGACTGAAAAGCCTAGTGTTCTTCCTCAGGAGCTGGAATTACCTCCTTCATCACAACATTTAAATCTAGATGGAATTCCTGTACTTGACCTTTTTTCTATTTATGCTTGTTTAAGATCATTTAGCACTCTATTATTTCTGAGTCCCTTCAAGTTGGAGGATTTTGTGGCCTCACTAACGTGCAAGACTCCTAGCTCGTTATTCGACCATGTTCATGTTTCTATTTTACAAACACTGAGAAAACACTTGGAGTGGCTTACAAATGAAGGTGACGAATCTGCTTCTAATTGTCTGAGGAGTCTCAATTGGGATTTTCTTGACTTGATTACGTGGCCAATTTTTATGGTGGAGTATTTCTTGATCCATGGTTCTGGACTAAAACTGGGTTTTGATCTCAGTTGCTTCAAGCTATACAAAACTGACTACTACACACAACCTGCTTCTGTAAAAGTTGAAATACTACGGTGTCTTTGTGATGATTTGATAGAAGTGGAAGCCATAAGGTCAGAGATTAATAGAAGGTCTTTGGCAGCTGAGCCTGACATGGTGAATGACCGGAATTTGAACTATGAGGTTGGCAAGAAAAGGAAGGCTCCAGTGGAGGTCGCTGGTACCTCGAATTTGAATGATGAGGTTGATGATGACACCAATGACTGGAATAGTGATGAGTGCTGCCTCTGTAAGATGGATGGAAATTTAATATGCTGTGATGGTTGTCCTGCTGCATATCATTCAAAATGTGTTGGAGTTTCTAATGATCTTTTGCCGGAGGGTGACTGGTACTGCCCTGAGTGTTTGATTGACCGGCATAGACCTTGGATGAAATTGCAGAAGTCACTCCGAGGTGCAGAGTTATTAGGGATTGATCCTTGTGGCCGGCTATATTTTAAAAGTTGTGGGTACCTTTTGGTATCAGACTCTTTTGATCATGAGTCCACATTCAACTATTATGACAGAAATGATCTGAATAAAGTTATTGAAGTGCTAAGGTCTTCAGGTTTTTCCTATGGTGGGATATTAGCGGCAATCTGCAAGCACTGGGACATTCCTGTTAGTTTCAAAGAAGCAGATGGTAACATTGGTTGCTTGACGCCCGTGGACCCTTCAGCATTTTCAGAAACATGTGCTGCTAAGAATGAGACTGATGAAGATAAAAAACTGCAAGAGAATTCAGTGACTGTGACAGCAATTCCAAATGTATCTTCTGAAGTGCCAGCTGAAACCATGCAAGTGGAAAGGTCAGTCATGCCGTGTGATTTAGATAGACCTGACTTTGTGAAAAAAGTTCAGCCTGAAGACTTTTCTTTACCATCCACTAGCTCACATAACTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031010 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

885

Amino Acids

97.88

Weight (kDa)

4.77

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 5 - 50 2.6e-12 PTM/DIR17-like, Tudor domain
DDT PF02791 468 - 522 1e-15 DDT domain
WHIM1 PF15612 579 - 612 8.4e-06 WSTF, HB1, Itc1p, MBD9 motif 1
PHD PF00628 664 - 705 9.6e-08 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1765
Acc65I GGTACC 2 cut(s) 1931, 2220
AccB1I GGYRCC 2 cut(s) 1931, 2220
AccB7I CCANNNNNTGG 1 cut(s) 1974
AciI CCGC 8 cut(s) 78, 165, 192, 195, 226, 386, 675, 2342
AclI AACGTT 1 cut(s) 936
AclWI GGATC 3 cut(s) 1268, 1675, 2180
AcoI YGGCCR 2 cut(s) 1652, 2194
AcuI CTGAAG 5 cut(s) 870, 2298, 2409, 2547, 2634
AcyI GRCGYC 1 cut(s) 2411
AfaI GTAC 5 cut(s) 74, 1404, 1933, 2102, 2222
AfiI CCNNNNNNNGG 7 cut(s) 87, 187, 448, 708, 709, 1974, 2331
AflIII ACRYGT 2 cut(s) 887, 2441
AjiI CACGTC 1 cut(s) 888
AjuI GAANNNNNNNTTGG 4 cut(s) 342, 374, 2506, 2538
AleI CACNNNNGTG 1 cut(s) 1498
Alw21I GWGCWC 2 cut(s) 36, 1237
Alw26I GTCTC 6 cut(s) 151, 1094, 1208, 1316, 1625, 2453
AlwI GGATC 3 cut(s) 1268, 1675, 2180
AlwNI CAGNNNCTG 2 cut(s) 1354, 2498
AoxI GGCC 6 cut(s) 40, 189, 205, 1488, 1652, 2194
ApeKI GCWGC 8 cut(s) 263, 714, 959, 1044, 1850, 1992, 2042, 2447
AseI ATTAAT 2 cut(s) 912, 1833
Asp700I GAANNNNTTC 2 cut(s) 277, 921
Asp718I GGTACC 2 cut(s) 1931, 2220
AspA2I CCTAGG 1 cut(s) 1126
AspS9I GGNCC 2 cut(s) 205, 2419
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 4 cut(s) 977, 1601, 1879, 2105
AvaII GGWCC 1 cut(s) 2419
AvrII CCTAGG 1 cut(s) 1126
AxyI CCTNAGG 1 cut(s) 1347
BalI TGGCCA 1 cut(s) 1654
BanI GGYRCC 2 cut(s) 1931, 2220
BanII GRGCYC 1 cut(s) 36
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 2 cut(s) 2304, 2622
Bbv12I GWGCWC 2 cut(s) 36, 1237
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 8 cut(s) 250, 701, 971, 1056, 1862, 1979, 2029, 2434
BceAI ACGGC 3 cut(s) 239, 1149, 2554
BciVI GTATCC 1 cut(s) 751
BclI TGATCA 1 cut(s) 2245
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 6 cut(s) 151, 1094, 1208, 1316, 1625, 2453
BfmI CTRYAG 2 cut(s) 1184, 1209
BfuAI ACCTGC 1 cut(s) 1765
BfuI GTATCC 1 cut(s) 751
BlnI CCTAGG 1 cut(s) 1126
BlpI GCTNAGC 1 cut(s) 1854
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 2419
BmgBI CACGTC 1 cut(s) 888
BmgT120I GGNCC 2 cut(s) 205, 2419
BmiI GGNNCC 5 cut(s) 700, 1914, 1933, 2222, 2421
BmrFI CCNGG 1 cut(s) 204
BmrI ACTGGG 2 cut(s) 1712, 2368
BmsI GCATC 3 cut(s) 616, 835, 859
BmuI ACTGGG 2 cut(s) 1712, 2368
BpiI GAAGAC 2 cut(s) 2304, 2622
BpmI CTGGAG 1 cut(s) 1899
Bpu10I CCTNAGC 2 cut(s) 171, 2306
Bpu1102I GCTNAGC 1 cut(s) 1854
BpuMI CCSGG 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 1650
BsaBI GATNNNNATC 3 cut(s) 480, 723, 984
BsaHI GRCGYC 1 cut(s) 2411
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 9 cut(s) 43, 157, 694, 1109, 1126, 1684, 2135, 2161, 2415
BsaWI WCCGGW 1 cut(s) 1875
Bsc4I CCNNNNNNNGG 7 cut(s) 87, 187, 448, 708, 709, 1974, 2331
Bse118I RCCGGY 2 cut(s) 2124, 2196
Bse1I ACTGG 6 cut(s) 1045, 1707, 1916, 1979, 2102, 2363
Bse21I CCTNAGG 1 cut(s) 1347
Bse8I GATNNNNATC 3 cut(s) 480, 723, 984
BseDI CCNNGG 9 cut(s) 43, 157, 694, 1109, 1126, 1684, 2135, 2161, 2415
BseGI GGATG 6 cut(s) 481, 554, 631, 2014, 2145, 2630
BseJI GATNNNNATC 3 cut(s) 480, 723, 984
BseLI CCNNNNNNNGG 7 cut(s) 87, 187, 448, 708, 709, 1974, 2331
BseNI ACTGG 6 cut(s) 1045, 1707, 1916, 1979, 2102, 2363
BseRI GAGGAG 4 cut(s) 140, 850, 1189, 1630
BseXI GCAGC 8 cut(s) 250, 701, 971, 1056, 1862, 1979, 2029, 2434
BseYI CCCAGC 1 cut(s) 521
BsgI GTGCAG 2 cut(s) 978, 2187
BshFI GGCC 6 cut(s) 42, 191, 207, 1490, 1654, 2196
BshNI GGYRCC 2 cut(s) 1931, 2220
BsiHKAI GWGCWC 2 cut(s) 36, 1237
BsiSI CCGG 6 cut(s) 57, 203, 1876, 2087, 2125, 2197
BsiWI CGTACG 1 cut(s) 72
BslFI GGGAC 3 cut(s) 898, 1449, 2375
BslI CCNNNNNNNGG 7 cut(s) 87, 187, 448, 708, 709, 1974, 2331
BsmAI GTCTC 6 cut(s) 151, 1094, 1208, 1316, 1625, 2453
BsmFI GGGAC 3 cut(s) 898, 1449, 2375
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 6 cut(s) 42, 191, 207, 1490, 1654, 2196
Bso31I GGTCTC 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 36, 1237
Bsp143I GATC 9 cut(s) 724, 1273, 1436, 1680, 1711, 2077, 2185, 2245, 2281
Bsp1720I GCTNAGC 1 cut(s) 1854
Bsp19I CCATGG 2 cut(s) 694, 1684
BspACI CCGC 8 cut(s) 78, 165, 192, 195, 226, 386, 675, 2342
BspANI GGCC 6 cut(s) 42, 191, 207, 1490, 1654, 2196
BspHI TCATGA 1 cut(s) 2248
BspLI GGNNCC 5 cut(s) 700, 1914, 1933, 2222, 2421
BspMI ACCTGC 1 cut(s) 1765
BspPI GGATC 3 cut(s) 1268, 1675, 2180
BspT107I GGYRCC 2 cut(s) 1931, 2220
BspTNI GGTCTC 1 cut(s) 151
BsrFI RCCGGY 2 cut(s) 2124, 2196
BsrI ACTGG 6 cut(s) 1045, 1707, 1916, 1979, 2102, 2363
BssAI RCCGGY 2 cut(s) 2124, 2196
BssECI CCNNGG 9 cut(s) 43, 157, 694, 1109, 1126, 1684, 2135, 2161, 2415
BssMI GATC 9 cut(s) 724, 1273, 1436, 1680, 1711, 2077, 2185, 2245, 2281
BssNI GRCGYC 1 cut(s) 2411
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 6 cut(s) 157, 694, 1109, 1126, 1684, 2135
Bst2BI CACGAG 1 cut(s) 182
Bst4CI ACNGT 9 cut(s) 47, 64, 562, 641, 773, 956, 1219, 1785, 2500
Bst6I CTCTTC 3 cut(s) 701, 1291, 1314
BstACI GRCGYC 1 cut(s) 2411
BstBAI YACGTR 1 cut(s) 1650
BstC8I GCNNGC 4 cut(s) 1102, 2198, 2354, 2535
BstDSI CCRYGG 4 cut(s) 43, 694, 1684, 2415
BstENI CCTNNNNNAGG 2 cut(s) 185, 446
BstF5I GGATG 6 cut(s) 481, 554, 631, 2014, 2145, 2630
BstKTI GATC 9 cut(s) 727, 1276, 1439, 1683, 1714, 2080, 2188, 2248, 2284
BstMAI GTCTC 6 cut(s) 151, 1094, 1208, 1316, 1625, 2453
BstMBI GATC 9 cut(s) 724, 1273, 1436, 1680, 1711, 2077, 2185, 2245, 2281
BstNSI RCATGY 1 cut(s) 2445
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 2 cut(s) 1184, 1209
BstV1I GCAGC 8 cut(s) 250, 701, 971, 1056, 1862, 1979, 2029, 2434
BstV2I GAAGAC 2 cut(s) 2304, 2622
BstXI CCANNNNNNTGG 2 cut(s) 1691, 2551
Bsu36I CCTNAGG 1 cut(s) 1347
BsuI GTATCC 1 cut(s) 751
BsuRI GGCC 6 cut(s) 42, 191, 207, 1490, 1654, 2196
BtgI CCRYGG 4 cut(s) 43, 694, 1684, 2415
BtrI CACGTC 1 cut(s) 888
BtsCI GGATG 6 cut(s) 481, 554, 631, 2014, 2145, 2630
BtsIMutI CAGTG 6 cut(s) 1038, 1276, 1553, 1923, 2356, 2499
BveI ACCTGC 1 cut(s) 1765
Cac8I GCNNGC 4 cut(s) 1102, 2198, 2354, 2535
CaiI CAGNNNCTG 2 cut(s) 1354, 2498
CciI TCATGA 1 cut(s) 2248
Cfr10I RCCGGY 2 cut(s) 2124, 2196
Cfr13I GGNCC 2 cut(s) 205, 2419
CseI GACGC 1 cut(s) 2419
Csp6I GTAC 5 cut(s) 73, 1403, 1932, 2101, 2221
CviQI GTAC 5 cut(s) 73, 1403, 1932, 2101, 2221
DpnI GATC 9 cut(s) 726, 1275, 1438, 1682, 1713, 2079, 2187, 2247, 2283
DpnII GATC 9 cut(s) 724, 1273, 1436, 1680, 1711, 2077, 2185, 2245, 2281
DraI TTTAAA 2 cut(s) 1383, 2209
EaeI YGGCCR 2 cut(s) 1652, 2194
Eam1104I CTCTTC 3 cut(s) 701, 1291, 1314
EarI CTCTTC 3 cut(s) 701, 1291, 1314
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 6 cut(s) 157, 694, 1109, 1126, 1684, 2135
Eco24I GRGCYC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 2419
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 5 cut(s) 870, 2298, 2409, 2547, 2634
Eco81I CCTNAGG 1 cut(s) 1347
EcoICRI GAGCTC 1 cut(s) 34
EcoNI CCTNNNNNAGG 2 cut(s) 185, 446
EcoRI GAATTC 3 cut(s) 1018, 1395, 2488
EcoT14I CCWWGG 6 cut(s) 157, 694, 1109, 1126, 1684, 2135
EcoT22I ATGCAT 1 cut(s) 1151
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 6 cut(s) 157, 694, 1109, 1126, 1684, 2135
FaqI GGGAC 3 cut(s) 898, 1449, 2375
FbaI TGATCA 1 cut(s) 2245
FokI GGATG 6 cut(s) 488, 561, 638, 2021, 2152, 2617
FriOI GRGCYC 1 cut(s) 36
GsaI CCCAGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 1899
HaeIII GGCC 6 cut(s) 42, 191, 207, 1490, 1654, 2196
HapII CCGG 6 cut(s) 57, 203, 1876, 2087, 2125, 2197
HgaI GACGC 1 cut(s) 2419
Hin1I GRCGYC 1 cut(s) 2411
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HpaII CCGG 6 cut(s) 57, 203, 1876, 2087, 2125, 2197
HphI GGTGA 4 cut(s) 977, 1601, 1879, 2105
Hpy166II GTNNAC 4 cut(s) 178, 968, 2256, 2419
Hpy188III TCNNGA 9 cut(s) 420, 824, 1137, 1349, 1388, 1637, 1678, 1692, 2249
Hpy8I GTNNAC 4 cut(s) 178, 968, 2256, 2419
HpyCH4III ACNGT 9 cut(s) 47, 64, 562, 641, 773, 956, 1219, 1785, 2500
HpyCH4IV ACGT 4 cut(s) 887, 936, 1499, 1649
HpySE526I ACGT 4 cut(s) 887, 936, 1499, 1649
Hsp92I GRCGYC 1 cut(s) 2411
KpnI GGTACC 2 cut(s) 1935, 2224
KroI GCCGGC 1 cut(s) 2196
KroNI GCCGGC 1 cut(s) 2198
Ksp22I TGATCA 1 cut(s) 2245
Kzo9I GATC 9 cut(s) 724, 1273, 1436, 1680, 1711, 2077, 2185, 2245, 2281
LmnI GCTCC 4 cut(s) 31, 159, 1351, 1918
Lsp1109I GCAGC 8 cut(s) 250, 701, 971, 1056, 1862, 1979, 2029, 2434
LweI GCATC 3 cut(s) 616, 835, 859
MaeII ACGT 4 cut(s) 887, 936, 1499, 1649
MaeIII GTNAC 8 cut(s) 551, 767, 1589, 2093, 2154, 2393, 2494, 2500
MalI GATC 9 cut(s) 726, 1275, 1438, 1682, 1713, 2079, 2187, 2247, 2283
MboI GATC 9 cut(s) 724, 1273, 1436, 1680, 1711, 2077, 2185, 2245, 2281
MfeI CAATTG 1 cut(s) 1624
MhlI GDGCHC 2 cut(s) 36, 1237
MlsI TGGCCA 1 cut(s) 1654
MluNI TGGCCA 1 cut(s) 1654
MlyI GAGTC 5 cut(s) 1471, 1501, 1627, 2231, 2261
MmeI TCCRAC 2 cut(s) 1455, 2044
Mox20I TGGCCA 1 cut(s) 1654
Mph1103I ATGCAT 1 cut(s) 1151
MroNI GCCGGC 1 cut(s) 2196
MroXI GAANNNNTTC 2 cut(s) 277, 921
MscI TGGCCA 1 cut(s) 1654
MslI CAYNNNNRTG 3 cut(s) 1498, 1533, 2549
Msp20I TGGCCA 1 cut(s) 1654
MspA1I CMGCKG 3 cut(s) 962, 1853, 2537
MspI CCGG 6 cut(s) 57, 203, 1876, 2087, 2125, 2197
MspR9I CCNGG 1 cut(s) 204
MunI CAATTG 1 cut(s) 1624
Mva1269I GAATGC 1 cut(s) 523
NaeI GCCGGC 1 cut(s) 2198
NciI CCSGG 1 cut(s) 204
NcoI CCATGG 2 cut(s) 694, 1684
NdeII GATC 9 cut(s) 724, 1273, 1436, 1680, 1711, 2077, 2185, 2245, 2281
NgoMIV GCCGGC 1 cut(s) 2196
NlaIV GGNNCC 5 cut(s) 700, 1914, 1933, 2222, 2421
NmuCI GTSAC 7 cut(s) 551, 767, 1589, 2093, 2154, 2494, 2500
NsiI ATGCAT 1 cut(s) 1151
NspI RCATGY 1 cut(s) 2445
OliI CACNNNNGTG 1 cut(s) 1498
PagI TCATGA 1 cut(s) 2248
PciI ACATGT 1 cut(s) 2441
PctI GAATGC 1 cut(s) 523
PdiI GCCGGC 1 cut(s) 2198
PdmI GAANNNNTTC 2 cut(s) 277, 921
PfeI GAWTC 7 cut(s) 416, 481, 566, 649, 1114, 1133, 1595
Pfl23II CGTACG 1 cut(s) 72
PflMI CCANNNNNTGG 1 cut(s) 1974
PleI GAGTC 5 cut(s) 1470, 1501, 1626, 2231, 2260
PpsI GAGTC 5 cut(s) 1470, 1501, 1626, 2231, 2260
Ppu21I YACGTR 1 cut(s) 1650
PscI ACATGT 1 cut(s) 2441
PshBI ATTAAT 2 cut(s) 912, 1833
Psp124BI GAGCTC 1 cut(s) 36
Psp1406I AACGTT 1 cut(s) 936
PspFI CCCAGC 1 cut(s) 521
PspLI CGTACG 1 cut(s) 72
PspN4I GGNNCC 5 cut(s) 700, 1914, 1933, 2222, 2421
PspPI GGNCC 2 cut(s) 205, 2419
PstNI CAGNNNCTG 2 cut(s) 1354, 2498
PvuII CAGCTG 3 cut(s) 962, 1853, 2537
RsaI GTAC 5 cut(s) 74, 1404, 1933, 2102, 2222
RsaNI GTAC 5 cut(s) 73, 1403, 1932, 2101, 2221
RseI CAYNNNNRTG 3 cut(s) 1498, 1533, 2549
SacI GAGCTC 1 cut(s) 36
Sau3AI GATC 9 cut(s) 724, 1273, 1436, 1680, 1711, 2077, 2185, 2245, 2281
Sau96I GGNCC 2 cut(s) 205, 2419
SchI GAGTC 5 cut(s) 1471, 1501, 1627, 2231, 2261
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 2 cut(s) 36, 1237
SfaNI GCATC 3 cut(s) 616, 835, 859
SfcI CTRYAG 2 cut(s) 1184, 1209
SinI GGWCC 1 cut(s) 2419
SmiI ATTTAAAT 1 cut(s) 1383
SmiMI CAYNNNNRTG 3 cut(s) 1498, 1533, 2549
SsiI CCGC 8 cut(s) 78, 165, 192, 195, 226, 386, 675, 2342
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 6 cut(s) 157, 694, 1109, 1126, 1684, 2135
SwaI ATTTAAAT 1 cut(s) 1383
TaaI ACNGT 9 cut(s) 47, 64, 562, 641, 773, 956, 1219, 1785, 2500
TaiI ACGT 4 cut(s) 890, 939, 1502, 1652
TaqI TCGA 7 cut(s) 96, 138, 253, 484, 723, 1524, 1937
TatI WGTACW 1 cut(s) 1402
TauI GCSGC 5 cut(s) 80, 194, 197, 229, 2345
TfiI GAWTC 7 cut(s) 416, 481, 566, 649, 1114, 1133, 1595
TscAI CASTG 6 cut(s) 1045, 1276, 1560, 1923, 2363, 2499
TseFI GTSAC 7 cut(s) 551, 767, 1589, 2093, 2154, 2494, 2500
TseI GCWGC 8 cut(s) 263, 714, 959, 1044, 1850, 1992, 2042, 2447
Tsp45I GTSAC 7 cut(s) 551, 767, 1589, 2093, 2154, 2494, 2500
TspRI CASTG 6 cut(s) 1045, 1276, 1560, 1923, 2363, 2499
Van91I CCANNNNNTGG 1 cut(s) 1974
VpaK11BI GGWCC 1 cut(s) 2419
VspI ATTAAT 2 cut(s) 912, 1833
XagI CCTNNNNNAGG 2 cut(s) 185, 446
XbaI TCTAGA 3 cut(s) 419, 823, 1387
XceI RCATGY 1 cut(s) 2445
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XmaJI CCTAGG 1 cut(s) 1126
XmnI GAANNNNTTC 2 cut(s) 277, 921
Zsp2I ATGCAT 1 cut(s) 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.