RchiOBHm_Chr5g0051171

DDT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003576
Physical Location & Seq
Reverse (-)
52113878 .. 52128286
14409 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32866

Sequence Viewer

Length: 4716 bp
ATGGAGTTCGTCGGGAGAAGTGTGAGGAAAGAGTTGAAAGGCGTCGTCGGAACTGTGAAATCCTACTCCGCCTCCTCCGGCTTCTTCCAGGTCCTCTTTGAAGACGGAAATTCCGAACAATTGGACTCGGCCCAGCTCTCTCTCCTCCTCCTCGCCGACCCCGCCCCGGCCCGAAAACCCAAGAAACGACGCCGTACAGGTAATTCTGATCCCAATTACAGAGGGGAGGATGAGCATGCTAGCAGTAATTCTAGTCCAGAAAAGGAGCAGGGGATTGATTTGAATGCGGGCTTTAATTTTAGCTTAAATGATGCTGCTGACCTGAATGTTGGTGAGGAGAGAGATTGTATTGATTTGAATTTGGATGCCAGCGGTTGTGATTCTGTTGACAATTTCGATGGGCCTAGTTTGGGCCAAGGGACCAAGCGGAGGGGTTGCGATTTCGATTTGAATTTGGAGGTTGCTGAGGAGGGGGACAGTGAAGACAAGTTTAAAATTAGTCCCAAGTTTGAGAGGATTGAAGAGAGTCGAAGCAGCGGAGACGCCCAAGGAAATGTTGCTGAGGATGGGAATGTTAATGAGACCCGGAAGCAAGTGTGTATTGATATTAATCAAGAAGTTCCCTTGAATGGCATTGAGTGTGCTGCTGTTGGGGAAGGACTCGGTAATGAGAACCGGTGGTCCAGTGGAGATATGAAGGTCGAATCTTCTCTTGGGGATTTGAATGCTAGTGCTGTTAAGGATAACGGTATGGTGGAAGATGGTCCTTCTGAAGCTGCTACTCCAGTGACTCATGGGCACCCAGGCGATTCAGCAAGTCCAAGCATTCAAAAAAGTAGCCGAAGGAAGAGAAGAAGGCTACCGGATAATTTGATGTCTAATTCTACAGAGACAGTTTTGAGGAGAAGTTCTCGCAGAGGATCTGCTCGGAATCATGTTTCCGTTGCATCATCTGCCGTTAGTAATCCTGTGTCCTCTTCTGCAGCTACTGCAGTAACAGAGGACGTACCGGTGATTTCTGGCAGTGAAGAAGCCGATCAGCCTAGTGTTGCCCCTCAGAAGCTCGGATTACCTCCTTCGTCACAACGTTTGAATTTAGAGGGCATTCCCGTACTTGACCTTTTTTCTATTTATGCCTGTTTGAGATCATTTAGTACAATATTGTTTCTGAGTCCCTTCAAGTTGGAGGATTTTGTGAGAGCACTGCAATGCAACTCTCCTAGTTTGTTATTTGATTCTGTTCATGTTTCTATTTTGCAAACGCTAAGAAAGCATTTGGAGTCCCTTTCAAATGAAGGTTCCGAATCTGCTTCTGATTGTCTAAGGAGTCTTAATTGGGATTTCCTGGACTTAATTACGTGGCCAGTTTTCATGGTTGAGTACTTTCTGATTCATTGTTCAGGACTGAAACCTGGATTTGACCTCGGTCACTTTAAGCTATTAAAAAGTGACTACTACAGTCAGCCTGCTTCTCTAAAGGTTGAGATTCTTCGCTGTCTATGTGATGATTTGATAGAAGGGGAAGCCATAAAGTCGGAGATTAATAGAAGGTGTTCGACATCTGAACATGACATGGGTTTTGATCGTGATGTAAACTTTGACGTCTGCAAGAAAAGGAAGGCTTCTGCGCAAATTGCTGGTAGCTCCAGTTTGAATGATGAAAATGTTGATGAAACCCCTGACTGGAATAGTGATGAATGTTGCCTCTGTAAGATGGAAGGGAACTTAATATGCTGTGATGGCTGTCCAGCAGCTTACCATTCAAGATGTGTGGGAGTTGTCAATGATCTTTTGCCGGAGGGTGATTGGTATTGCCCTGAATGTATGATTGATAGGCACAAACCTTGGATGAAACTCCGCAAGTCACTGCGAGGTGCAGAGCTATTAGGAATTGATCCTCATGGTCGGCTATATTTTAAAAGCTGCGGCTACCTGTTGGTATCTGGTTTTTGTGATGATGAATCTGCATTTAATTACTATCACAGAGATGATCTAAACAAGATTATTGAAGTGTTAAGGTCTTCAGAATTTTCCTATGGTGGGATATTATTGGGAATCTATAAGCACTGGGACATTCCTACTACCTTTAATGGAGCAATTAGTAGCAAGCCCCTGGACCAATTGGAATTTTCAGAAACAGGTGATGCTAAAAATGAGACGCATGAGGATAGAAAACTGCAAGAGAAGTTTTGTAATCTCGTTTCTGATGTTTCAAATTCTGTTCAAGTGCTGAGAAGGACTGTCATTCAGGATGATTCAAATAATCTTGCTGATATTTCAAATCAATCAGATTTGGTCAGAAAACTGCCTGAAGACTGTTCTTTGACATCTACTTGCTTAGATGTCAGACAAGAGAGCAACGGTTCTATTGATCTTGGAAAAATTTCATCTGCTATAACCACTAGAAAAGAGGGCACTTCAGAAGTGGATTGTGGAATTGATTACATGAACTACTACAGTTTTGGCCAAATTGCTTCATCTGTTGCAGAGGAGTTGTCTAAATCATCAGAAAAGAATAAGGAAGGTGCACTAAATACAGTAGATGAAATAATATCTGCGCAGATGAAGACCATTATAAAAAAATCTTCCAAGTTTTCCTGGCCAAATATTGAGAACTTAAATATAGATGTGCAGAAAGAGAAATGTGGGTGGTGCTTTTCTTGCAAATATCCTGCTGATGATAGGGATTGCTTGCTTATCATGAGTAAGCTGCCTTTACAGGATGTTTCCAAGACTGATGTAGTTGGACTTCAATTGAAAAATATTCCCAAAGATCATCTTAATGATGTCAGCTGTCAAATTTTGTCCATTCATGATCGCCTGCTTGGGCTTCTGTTGGGTCCGTGGTTGAACCCCCATCATACAGAATACTGGCGGAATAGTCTTCTTAATGCATGCGATCTTGCCTCTGTTAAGCATTTACTGCTCCTTCTAGTGGAAAATTTGCATCATCGTGCATTGTCCGCAGATTGGTTGAAACATGTGGACTCTGTTGTTACCATGGGTTCAGCTTCTCATGTTGTGACTTCATTACGTGCATACTCAAAGAACATGAACAGCAGAAAGAGGCCCAAGTTTTCTGATATTGATTCAAATCCATCTTCAAATGCCGGCAGTGGATTGGGAATGTTTTGGTGGAGGGGTGGCAGGCTTTCTCGTCAGGTGTTTGGTTGGAAGATTTTGCCTCGCTCCTTGACTTCTAAGGCTGCCAGACAAGGTGGGTGCACAAAAATAATGGGAATATTGTATCCTGAGAATTCAGAATATGCAAAGAGAAGCAAATATATTGCCTGGCGAGCTACTGTTGAGATGTCGACTAGTGCAGAACAGCTTGCTTTGCAGGTTAGGGAGCTTTATTCAAACATTAGGTGGGATGATATTGAGAACACACACCCGCTGCCTACATTGGACAAGGAATCTACAAAATCAATCAAGCTTTTCAGGAAAGTTATTGTCCGCAGGAAGTGCTCAGAAAAGGGAGTGGTTAAGTATCTTCTTGATTTTGGCAAGAGAAGAGCAATCCCCGACATTGTCAGGAAACATGGTTCTGTGCTTGAAGAACCATCTAATGAGAGGAAAAAGTATTGGCTTGAAGAATCATATCTTCCTCTGCATCTTTTGAAAAATTTTGAGGAGAGAAGAATTGCCCGCAAGTCTAGTGATGGGAAGTCTGGTAAAGTTCTTGCAGTTGGTAGAGTAATGCGGCCCCCGGATGAAAAGGGATTTGCTTATTTGTTTTCCAAAGCAGAAAGATCAGAGTATTATAAGTGTGGACACTGCCACAAAGATGTCCTGATAAGGGAAGCTGTGAGTTGTCAATTGTGCAGAGGATTTTTCCACAAAAGGCATGCGAAGAAGTCTGCTGGGGCCATTGTTTCCGAGTGTACGTATACATGCCACCGATGCCAGAATGGGGTCTCTGCGAAGATTGATACAAAAAGAGGGAAAGCTGATAAAAAGAGAGGAAAAGTTGGTATGAAAAGAGGGAAAGTTGAAACAAAAATAGAGAAAGTACAGTCACAGAAATGTAAAAATTCTCAAACTGATCGTAGATCACTGCGTTTGAGAAGCAAAAGAAAAGCTTTAGCTGGAGGAAGACAGGTACAATTGAAAAATAGCAAAAAGGTTCCTGTAAGTGTACCTTTACGCCGCTCTCCAAGGAAAGCTAAATGCTTGACGTTGCAAAATAAAAAGCATAGCAAACGCAAGAAAGGGAAACAAAGCAAATCCAAGAAGCGGACGTATAAGAAACCAAAGACAGGGACCTTGTGTCAGAAGAAGAGAACACAAGTTTATCGCAGTTACTGGCTAAATGGTCTGCAGTTGTCTAGAAAGCCAAATGATAAACGTGTTATGCTTTTTAGGGAGAAAAAACTACTTGCTCACTGTGGCTGTTCTTCTATCGTTCTCGGTCAACTCAAATGCCAGCTCTGTTGTGAAGCAGAATATGCATCTACTTTAGATTATATCGGGTGTGAACTATGTGGAGAGTGGTTTCATGGGGAGGCTTTTGGGCTGGATTCAGAGAACATTGATAAGCTCATTGGATTCAGGTGCCATGTGTGTCGTAAAACAGAACCTCCTGTCTGCCCCCATCTGGTAGTTGTGAAAACTGATGTGTCCCAATTGGCTGAAGCTCAAACTGATGGTTCTGTTGATTGTTCAGAGGAAGTACCTAATGCAGTCCCGACTTTGAGTGAGATTACATGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031010 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

1571

Amino Acids

175.47

Weight (kDa)

8.61

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 5 - 48 3.2e-07 PTM/DIR17-like, Tudor domain
DDT PF02791 371 - 425 4.7e-17 DDT domain
WHIM1 PF15612 480 - 515 3.4e-06 WSTF, HB1, Itc1p, MBD9 motif 1
PHD PF00628 567 - 608 1e-06 PHD-finger
Chromo_PTM PF24294 1145 - 1217 5.9e-27 Membrane-bound transcription factor PTM, chromo domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2576, 3765
AatII GACGTC 1 cut(s) 1605
Acc16I TGCGCA 2 cut(s) 1629, 2559
Acc36I ACCTGC 1 cut(s) 3331
AccB1I GGYRCC 2 cut(s) 798, 4554
AccBSI CCGCTC 1 cut(s) 4152
AccI GTMKAC 2 cut(s) 3314, 3890
AclI AACGTT 1 cut(s) 1087
AclWI GGATC 3 cut(s) 203, 928, 1889
AcoI YGGCCR 3 cut(s) 1361, 2464, 2600
AcuI CTGAAG 5 cut(s) 792, 2007, 2331, 2403, 4653
AcyI GRCGYC 4 cut(s) 42, 190, 543, 1602
AflIII ACRYGT 2 cut(s) 2980, 4348
AgeI ACCGGT 2 cut(s) 675, 1009
AhdI GACNNNNNGTC 1 cut(s) 4269
AhlI ACTAGT 1 cut(s) 3317
AjnI CCWGG 7 cut(s) 87, 802, 1344, 1411, 2112, 2597, 3290
AjuI GAANNNNNNNTTGG 2 cut(s) 696, 728
AloI GAACNNNNNNTCC 4 cut(s) 665, 697, 3529, 3561
Alw21I GWGCWC 4 cut(s) 1204, 2530, 3227, 3470
Alw26I GTCTC 5 cut(s) 534, 575, 884, 2150, 3922
Alw44I GTGCAC 2 cut(s) 2526, 3223
AlwI GGATC 3 cut(s) 203, 928, 1889
AlwNI CAGNNNCTG 2 cut(s) 989, 4305
ApaLI GTGCAC 2 cut(s) 2526, 3223
ArsI GACNNNNNNTTYG 2 cut(s) 1562, 1594
AseI ATTAAT 2 cut(s) 609, 1542
AsiGI ACCGGT 2 cut(s) 675, 1009
Asp700I GAANNNNTTC 2 cut(s) 1552, 2383
AspLEI GCGC 2 cut(s) 1630, 2560
AsuC2I CCSGG 3 cut(s) 167, 586, 3710
AsuHPI GGTGA 4 cut(s) 344, 1024, 1814, 2153
AsuNHI GCTAGC 1 cut(s) 239
AvaII GGWCC 7 cut(s) 91, 420, 681, 764, 2116, 2840, 4263
BaeGI GKGCMC 4 cut(s) 801, 2417, 2530, 3227
BalI TGGCCA 3 cut(s) 1363, 2466, 2602
BanI GGYRCC 2 cut(s) 798, 4554
BarI GAAGNNNNNNTAC 2 cut(s) 2733, 2765
BbsI GAAGAC 7 cut(s) 108, 489, 2013, 2319, 2573, 2876, 4102
Bbv12I GWGCWC 4 cut(s) 1204, 2530, 3227, 3470
BbvCI CCTCAGC 2 cut(s) 465, 561
BceAI ACGGC 2 cut(s) 177, 941
BciT130I CCWGG 7 cut(s) 89, 804, 1346, 1413, 2114, 2599, 3292
BciVI GTATCC 1 cut(s) 3258
BcnI CCSGG 3 cut(s) 167, 586, 3710
BcoDI GTCTC 5 cut(s) 534, 575, 884, 2150, 3922
BcuI ACTAGT 1 cut(s) 3317
BfmI CTRYAG 6 cut(s) 885, 981, 990, 1456, 2455, 4319
BfuAI ACCTGC 1 cut(s) 3331
BfuI GTATCC 1 cut(s) 3258
BmcAI AGTACT 1 cut(s) 1382
Bme18I GGWCC 7 cut(s) 91, 420, 681, 764, 2116, 2840, 4263
BmeRI GACNNNNNGTC 1 cut(s) 4269
BmiI GGNNCC 9 cut(s) 421, 800, 1300, 2841, 3707, 3868, 4128, 4264, 4556
BmrI ACTGGG 1 cut(s) 2077
BmsI GCATC 8 cut(s) 301, 355, 956, 2134, 2956, 3622, 3893, 4460
BmtI GCTAGC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 2077
BoxI GACNNNNGTC 1 cut(s) 1425
BpiI GAAGAC 7 cut(s) 108, 489, 2013, 2319, 2573, 2876, 4102
BplI GAGNNNNNCTC 2 cut(s) 895, 927
BpmI CTGGAG 3 cut(s) 768, 1630, 4110
Bpu10I CCTNAGC 2 cut(s) 465, 561
BpuMI CCSGG 3 cut(s) 167, 586, 3710
BsaAI YACGTR 3 cut(s) 1359, 3035, 3888
BsaBI GATNNNNATC 2 cut(s) 609, 3093
BsaHI GRCGYC 4 cut(s) 42, 190, 543, 1602
BsaI GGTCTC 2 cut(s) 575, 3922
BsaWI WCCGGW 3 cut(s) 675, 862, 1009
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 4564, 4594
Bse118I RCCGGY 3 cut(s) 675, 1009, 3110
Bse1I ACTGG 8 cut(s) 684, 785, 1364, 1647, 1688, 2072, 2876, 4310
Bse3DI GCAATG 1 cut(s) 1214
Bse8I GATNNNNATC 2 cut(s) 609, 3093
BseBI CCWGG 7 cut(s) 89, 804, 1346, 1413, 2114, 2599, 3292
BseGI GGATG 8 cut(s) 235, 370, 571, 1854, 2257, 2728, 3379, 3718
BseJI GATNNNNATC 2 cut(s) 609, 3093
BseMI GCAATG 1 cut(s) 1214
BseMII CTCAG 7 cut(s) 456, 552, 1070, 1160, 2222, 3243, 3483
BseNI ACTGG 8 cut(s) 684, 785, 1364, 1647, 1688, 2072, 2876, 4310
BseRI GAGGAG 9 cut(s) 64, 134, 137, 140, 350, 482, 916, 2504, 3647
BseSI GKGCMC 4 cut(s) 801, 2417, 2530, 3227
BseYI CCCAGC 2 cut(s) 132, 3863
BsgI GTGCAG 4 cut(s) 1896, 2651, 3342, 3844
BshNI GGYRCC 2 cut(s) 798, 4554
BshTI ACCGGT 2 cut(s) 675, 1009
BsiHKAI GWGCWC 4 cut(s) 1204, 2530, 3227, 3470
BsiSI CCGG 9 cut(s) 78, 167, 586, 676, 863, 1010, 1796, 3111, 3710
BslFI GGGAC 9 cut(s) 433, 486, 488, 1158, 1267, 2084, 4276, 4606, 4670
BsmAI GTCTC 5 cut(s) 534, 575, 884, 2150, 3922
BsmBI CGTCTC 2 cut(s) 534, 2150
BsmFI GGGAC 9 cut(s) 433, 486, 488, 1158, 1267, 2084, 4276, 4606, 4670
BsmI GAATGC 4 cut(s) 289, 730, 825, 1104
Bso31I GGTCTC 2 cut(s) 575, 3922
Bsp1286I GDGCHC 6 cut(s) 801, 1204, 2417, 2530, 3227, 3470
Bsp19I CCATGG 1 cut(s) 3000
BspCNI CTCAG 7 cut(s) 457, 553, 1069, 1161, 2223, 3244, 3482
BspHI TCATGA 2 cut(s) 2700, 2812
BspLI GGNNCC 9 cut(s) 421, 800, 1300, 2841, 3707, 3868, 4128, 4264, 4556
BspMAI CTGCAG 3 cut(s) 985, 994, 4323
BspMI ACCTGC 1 cut(s) 3331
BspOI GCTAGC 1 cut(s) 243
BspPI GGATC 3 cut(s) 203, 928, 1889
BspQI GCTCTTC 1 cut(s) 3508
BspT107I GGYRCC 2 cut(s) 798, 4554
BspTNI GGTCTC 2 cut(s) 575, 3922
BsrBI CCGCTC 1 cut(s) 4152
BsrDI GCAATG 1 cut(s) 1214
BsrFI RCCGGY 3 cut(s) 675, 1009, 3110
BsrI ACTGG 8 cut(s) 684, 785, 1364, 1647, 1688, 2072, 2876, 4310
BssAI RCCGGY 3 cut(s) 675, 1009, 3110
BssNAI GTATAC 1 cut(s) 3891
BssNI GRCGYC 4 cut(s) 42, 190, 543, 1602
BssT1I CCWWGG 5 cut(s) 415, 547, 1844, 3000, 4157
Bst1107I GTATAC 1 cut(s) 3891
Bst2UI CCWGG 7 cut(s) 89, 804, 1346, 1413, 2114, 2599, 3292
Bst6I CTCTTC 5 cut(s) 516, 842, 982, 3508, 4274
BstACI GRCGYC 4 cut(s) 42, 190, 543, 1602
BstAPI GCANNNNNTGC 5 cut(s) 953, 989, 2923, 3465, 4448
BstBAI YACGTR 3 cut(s) 1359, 3035, 3888
BstDSI CCRYGG 2 cut(s) 2843, 3000
BstF5I GGATG 8 cut(s) 235, 370, 571, 1854, 2257, 2728, 3379, 3718
BstHHI GCGC 2 cut(s) 1630, 2560
BstMAI GTCTC 5 cut(s) 534, 575, 884, 2150, 3922
BstNI CCWGG 7 cut(s) 89, 804, 1346, 1413, 2114, 2599, 3292
BstNSI RCATGY 6 cut(s) 239, 2898, 2984, 3851, 3897, 4710
BstPAI GACNNNNGTC 1 cut(s) 1425
BstSFI CTRYAG 6 cut(s) 885, 981, 990, 1456, 2455, 4319
BstSLI GKGCMC 4 cut(s) 801, 2417, 2530, 3227
BstSNI TACGTA 1 cut(s) 3888
BstV2I GAAGAC 7 cut(s) 108, 489, 2013, 2319, 2573, 2876, 4102
BstX2I RGATCY 1 cut(s) 920
BstYI RGATCY 1 cut(s) 920
BstZ17I GTATAC 1 cut(s) 3891
BsuI GTATCC 1 cut(s) 3258
BtgI CCRYGG 2 cut(s) 2843, 3000
BtsCI GGATG 8 cut(s) 235, 370, 571, 1854, 2257, 2728, 3379, 3718
BtsI GCAGTG 6 cut(s) 1030, 1202, 1865, 3121, 3775, 4055
BveI ACCTGC 1 cut(s) 3331
CaiI CAGNNNCTG 2 cut(s) 989, 4305
CciI TCATGA 2 cut(s) 2700, 2812
CfoI GCGC 2 cut(s) 1630, 2560
Cfr10I RCCGGY 3 cut(s) 675, 1009, 3110
CseI GACGC 4 cut(s) 31, 198, 551, 2167
CspAI ACCGGT 2 cut(s) 675, 1009
CspCI CAANNNNNGTGG 2 cut(s) 1752, 1787
DraI TTTAAA 2 cut(s) 493, 1918
DriI GACNNNNNGTC 1 cut(s) 4269
EaeI YGGCCR 3 cut(s) 1361, 2464, 2600
Eam1104I CTCTTC 5 cut(s) 516, 842, 982, 3508, 4274
Eam1105I GACNNNNNGTC 1 cut(s) 4269
EarI CTCTTC 5 cut(s) 516, 842, 982, 3508, 4274
EciI GGCGGA 2 cut(s) 58, 2890
Eco105I TACGTA 1 cut(s) 3888
Eco130I CCWWGG 5 cut(s) 415, 547, 1844, 3000, 4157
Eco31I GGTCTC 2 cut(s) 575, 3922
Eco47I GGWCC 7 cut(s) 91, 420, 681, 764, 2116, 2840, 4263
Eco57I CTGAAG 5 cut(s) 792, 2007, 2331, 2403, 4653
EcoO109I RGGNCCY 2 cut(s) 91, 4263
EcoRI GAATTC 1 cut(s) 3256
EcoRII CCWGG 7 cut(s) 87, 802, 1344, 1411, 2112, 2597, 3290
EcoT14I CCWWGG 5 cut(s) 415, 547, 1844, 3000, 4157
EcoT22I ATGCAT 2 cut(s) 2896, 4453
ErhI CCWWGG 5 cut(s) 415, 547, 1844, 3000, 4157
Esp3I CGTCTC 2 cut(s) 534, 2150
FalI AAGNNNNNCTT 8 cut(s) 1606, 1638, 2763, 2795, 4066, 4098, 4126, 4158
FaqI GGGAC 9 cut(s) 433, 486, 488, 1158, 1267, 2084, 4276, 4606, 4670
FauI CCCGC 4 cut(s) 169, 280, 3402, 3656
FblI GTMKAC 2 cut(s) 3314, 3890
FokI GGATG 8 cut(s) 242, 377, 578, 1861, 2264, 2735, 3386, 3725
FspI TGCGCA 2 cut(s) 1629, 2559
GlaI GCGC 2 cut(s) 1629, 2559
GsaI CCCAGC 2 cut(s) 136, 3867
GsuI CTGGAG 3 cut(s) 768, 1630, 4110
HapII CCGG 9 cut(s) 78, 167, 586, 676, 863, 1010, 1796, 3111, 3710
HgaI GACGC 4 cut(s) 31, 198, 551, 2167
HhaI GCGC 2 cut(s) 1630, 2560
Hin1I GRCGYC 4 cut(s) 42, 190, 543, 1602
Hin6I GCGC 2 cut(s) 1628, 2558
HinP1I GCGC 2 cut(s) 1628, 2558
HincII GTYRAC 3 cut(s) 388, 3315, 4415
HindII GTYRAC 3 cut(s) 388, 3315, 4415
HindIII AAGCTT 2 cut(s) 3434, 4080
HpaII CCGG 9 cut(s) 78, 167, 586, 676, 863, 1010, 1796, 3111, 3710
HphI GGTGA 4 cut(s) 344, 1024, 1814, 2153
Hpy99I CGWCG 4 cut(s) 14, 47, 50, 192
HpyCH4IV ACGT 9 cut(s) 1005, 1087, 1358, 1602, 3034, 3887, 4178, 4241, 4348
HpySE526I ACGT 9 cut(s) 1005, 1087, 1358, 1602, 3034, 3887, 4178, 4241, 4348
Hsp92I GRCGYC 4 cut(s) 42, 190, 543, 1602
HspAI GCGC 2 cut(s) 1628, 2558
KroI GCCGGC 1 cut(s) 3110
KroNI GCCGGC 1 cut(s) 3112
LguI GCTCTTC 1 cut(s) 3508
LmnI GCTCC 6 cut(s) 265, 1649, 2093, 2931, 3194, 3349
LweI GCATC 8 cut(s) 301, 355, 956, 2134, 2956, 3622, 3893, 4460
MaeII ACGT 9 cut(s) 1005, 1087, 1358, 1602, 3034, 3887, 4178, 4241, 4348
MbiI CCGCTC 1 cut(s) 4152
MfeI CAATTG 6 cut(s) 119, 2120, 2753, 3818, 4106, 4625
MflI RGATCY 1 cut(s) 920
MhlI GDGCHC 6 cut(s) 801, 1204, 2417, 2530, 3227, 3470
MlsI TGGCCA 3 cut(s) 1363, 2466, 2602
MluNI TGGCCA 3 cut(s) 1363, 2466, 2602
MlyI GAGTC 8 cut(s) 119, 535, 654, 784, 1180, 1289, 1336, 2981
MmeI TCCRAC 5 cut(s) 28, 1164, 1515, 2725, 3152
Mox20I TGGCCA 3 cut(s) 1363, 2466, 2602
Mph1103I ATGCAT 2 cut(s) 2896, 4453
MroNI GCCGGC 1 cut(s) 3110
MroXI GAANNNNTTC 2 cut(s) 1552, 2383
MscI TGGCCA 3 cut(s) 1363, 2466, 2602
MslI CAYNNNNRTG 7 cut(s) 1207, 1986, 2781, 2952, 3786, 4024, 4711
Msp20I TGGCCA 3 cut(s) 1363, 2466, 2602
MspA1I CMGCKG 4 cut(s) 372, 537, 2793, 3397
MspI CCGG 9 cut(s) 78, 167, 586, 676, 863, 1010, 1796, 3111, 3710
MunI CAATTG 6 cut(s) 119, 2120, 2753, 3818, 4106, 4625
Mva1269I GAATGC 4 cut(s) 289, 730, 825, 1104
MvaI CCWGG 7 cut(s) 89, 804, 1346, 1413, 2114, 2599, 3292
NaeI GCCGGC 1 cut(s) 3112
NciI CCSGG 3 cut(s) 167, 586, 3710
NcoI CCATGG 1 cut(s) 3000
NgoMIV GCCGGC 1 cut(s) 3110
NheI GCTAGC 1 cut(s) 239
NlaIV GGNNCC 9 cut(s) 421, 800, 1300, 2841, 3707, 3868, 4128, 4264, 4556
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 7 cut(s) 787, 1080, 1427, 1448, 1863, 3022, 4017
NsbI TGCGCA 2 cut(s) 1629, 2559
NsiI ATGCAT 2 cut(s) 2896, 4453
NspI RCATGY 6 cut(s) 239, 2898, 2984, 3851, 3897, 4710
PaeI GCATGC 3 cut(s) 239, 2898, 3851
PagI TCATGA 2 cut(s) 2700, 2812
PciI ACATGT 1 cut(s) 2980
PciSI GCTCTTC 1 cut(s) 3508
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 4 cut(s) 289, 730, 825, 1104
PdiI GCCGGC 1 cut(s) 3112
PdmI GAANNNNTTC 2 cut(s) 1552, 2383
PflFI GACNNNGTC 1 cut(s) 3530
PfoI TCCNGGA 1 cut(s) 1344
PinAI ACCGGT 2 cut(s) 675, 1009
PleI GAGTC 8 cut(s) 119, 534, 654, 784, 1179, 1288, 1335, 2981
PpsI GAGTC 8 cut(s) 119, 534, 654, 784, 1179, 1288, 1335, 2981
Ppu21I YACGTR 3 cut(s) 1359, 3035, 3888
PpuMI RGGWCCY 2 cut(s) 91, 4263
PscI ACATGT 1 cut(s) 2980
PshAI GACNNNNGTC 1 cut(s) 1425
PshBI ATTAAT 2 cut(s) 609, 1542
PsiI TTATAA 2 cut(s) 2576, 3765
Psp1406I AACGTT 1 cut(s) 1087
Psp5II RGGWCCY 2 cut(s) 91, 4263
Psp6I CCWGG 7 cut(s) 87, 802, 1344, 1411, 2112, 2597, 3290
PspFI CCCAGC 2 cut(s) 132, 3863
PspGI CCWGG 7 cut(s) 87, 802, 1344, 1411, 2112, 2597, 3290
PspN4I GGNNCC 9 cut(s) 421, 800, 1300, 2841, 3707, 3868, 4128, 4264, 4556
PspPPI RGGWCCY 2 cut(s) 91, 4263
PstI CTGCAG 3 cut(s) 985, 994, 4323
PstNI CAGNNNCTG 2 cut(s) 989, 4305
PsuI RGATCY 1 cut(s) 920
PsyI GACNNNGTC 1 cut(s) 3530
PvuII CAGCTG 1 cut(s) 2793
RseI CAYNNNNRTG 7 cut(s) 1207, 1986, 2781, 2952, 3786, 4024, 4711
SalI GTCGAC 1 cut(s) 3313
SapI GCTCTTC 1 cut(s) 3508
ScaI AGTACT 1 cut(s) 1382
SchI GAGTC 8 cut(s) 119, 535, 654, 784, 1180, 1289, 1336, 2981
SduI GDGCHC 6 cut(s) 801, 1204, 2417, 2530, 3227, 3470
SfaNI GCATC 8 cut(s) 301, 355, 956, 2134, 2956, 3622, 3893, 4460
SfcI CTRYAG 6 cut(s) 885, 981, 990, 1456, 2455, 4319
SinI GGWCC 7 cut(s) 91, 420, 681, 764, 2116, 2840, 4263
SmiMI CAYNNNNRTG 7 cut(s) 1207, 1986, 2781, 2952, 3786, 4024, 4711
SnaBI TACGTA 1 cut(s) 3888
SpeI ACTAGT 1 cut(s) 3317
SphI GCATGC 3 cut(s) 239, 2898, 3851
SspI AATATT 4 cut(s) 1161, 2608, 2764, 3243
StyI CCWWGG 5 cut(s) 415, 547, 1844, 3000, 4157
TaiI ACGT 9 cut(s) 1008, 1090, 1361, 1605, 3037, 3890, 4181, 4244, 4351
TaqI TCGA 6 cut(s) 396, 444, 529, 702, 1556, 3314
TaqII GACCGA 2 cut(s) 1415, 4400
TatI WGTACW 3 cut(s) 1154, 1380, 4012
TauI GCSGC 3 cut(s) 1929, 3706, 4152
TseFI GTSAC 7 cut(s) 787, 1080, 1427, 1448, 1863, 3022, 4017
Tsp45I GTSAC 7 cut(s) 787, 1080, 1427, 1448, 1863, 3022, 4017
TspGWI ACGGA 3 cut(s) 120, 931, 2832
Tth111I GACNNNGTC 1 cut(s) 3530
VneI GTGCAC 2 cut(s) 2526, 3223
VpaK11BI GGWCC 7 cut(s) 91, 420, 681, 764, 2116, 2840, 4263
VspI ATTAAT 2 cut(s) 609, 1542
XbaI TCTAGA 1 cut(s) 4328
XceI RCATGY 6 cut(s) 239, 2898, 2984, 3851, 3897, 4710
XmiI GTMKAC 2 cut(s) 3314, 3890
XmnI GAANNNNTTC 2 cut(s) 1552, 2383
ZraI GACGTC 1 cut(s) 1603
ZrmI AGTACT 1 cut(s) 1382
Zsp2I ATGCAT 2 cut(s) 2896, 4453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.