DDT domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G12400 |
| fragaria_vesca | FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 FvH4_3g28290 |
| malus_domestica | MD03G1169900.v1.1 MD11G1187100.v1.1 |
| prunus_persica | Prupe.4G257200_v2.0.a1 Prupe.4G257200_v2.0.a1 Prupe.4G257200_v2.0.a1 Prupe.4G257200_v2.0.a1 Prupe.4G257200_v2.0.a1 |
| pyrus_communis | pycom03g12620 pycom11g16390 pycom11g16400 |
| rosa_chinensis | RchiOBHm_Chr5g0051171 |
| rosa_laevigata | RLG00000034759 |
| rosa_multiflora | Rmu_co8421621.1_g000001 Rmu_sc0000446.1_g000011 Rmu_sc0020509.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00029270 Rroxscaffold_1G00029280 |
| rosa_rugosa | Rorug05G0266200 |
| rosa_samantha | Rh5AG338600 Rh5BG348500 Rh5CG375600 Rh5DG361400 |
| rosa_wichuraiana | Rw0G023670 Rw5G031980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2582, 3771 |
| AatII | GACGTC | 2 cut(s) | 1608, 3035 |
| Acc16I | TGCGCA | 1 cut(s) | 2565 |
| Acc36I | ACCTGC | 1 cut(s) | 3337 |
| AccB1I | GGYRCC | 2 cut(s) | 801, 4527 |
| AccBSI | CCGCTC | 1 cut(s) | 4125 |
| AccI | GTMKAC | 2 cut(s) | 3320, 3896 |
| AccII | CGCG | 1 cut(s) | 3303 |
| AccIII | TCCGGA | 1 cut(s) | 2314 |
| AclWI | GGATC | 3 cut(s) | 203, 931, 1892 |
| AcoI | YGGCCR | 4 cut(s) | 153, 1364, 2470, 2606 |
| AcuI | CTGAAG | 4 cut(s) | 795, 2010, 2409, 4626 |
| AcyI | GRCGYC | 5 cut(s) | 42, 190, 546, 1605, 3032 |
| AflIII | ACRYGT | 2 cut(s) | 2986, 4321 |
| AgeI | ACCGGT | 1 cut(s) | 1012 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4242 |
| AhlI | ACTAGT | 1 cut(s) | 3323 |
| AjnI | CCWGG | 8 cut(s) | 87, 150, 805, 1347, 1414, 2115, 2603, 3296 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 699, 731 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 668, 700, 3535, 3567 |
| Alw21I | GWGCWC | 4 cut(s) | 1207, 2536, 3233, 3476 |
| Alw26I | GTCTC | 7 cut(s) | 537, 578, 887, 946, 1255, 2153, 3928 |
| Alw44I | GTGCAC | 2 cut(s) | 2532, 3229 |
| AlwI | GGATC | 3 cut(s) | 203, 931, 1892 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 992, 4278 |
| Ama87I | CYCGRG | 2 cut(s) | 76, 506 |
| Aor13HI | TCCGGA | 1 cut(s) | 2314 |
| ApaLI | GTGCAC | 2 cut(s) | 2532, 3229 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1565, 1597 |
| AseI | ATTAAT | 2 cut(s) | 612, 1545 |
| AsiGI | ACCGGT | 1 cut(s) | 1012 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1555, 2389 |
| AspLEI | GCGC | 3 cut(s) | 2566, 3303, 3305 |
| AsuC2I | CCSGG | 3 cut(s) | 162, 167, 589 |
| AsuHPI | GGTGA | 4 cut(s) | 347, 1027, 1817, 2156 |
| AsuNHI | GCTAGC | 1 cut(s) | 239 |
| AvaI | CYCGRG | 2 cut(s) | 76, 506 |
| AvaII | GGWCC | 7 cut(s) | 91, 423, 684, 767, 2119, 2846, 4236 |
| BaeGI | GKGCMC | 4 cut(s) | 804, 2423, 2536, 3233 |
| BalI | TGGCCA | 3 cut(s) | 1366, 2472, 2608 |
| BanI | GGYRCC | 2 cut(s) | 801, 4527 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2739, 2771 |
| BbsI | GAAGAC | 7 cut(s) | 108, 492, 2016, 2325, 2579, 2882, 4075 |
| Bbv12I | GWGCWC | 4 cut(s) | 1207, 2536, 3233, 3476 |
| BbvCI | CCTCAGC | 1 cut(s) | 564 |
| BceAI | ACGGC | 1 cut(s) | 177 |
| BciT130I | CCWGG | 8 cut(s) | 89, 152, 807, 1349, 1416, 2117, 2605, 3298 |
| BciVI | GTATCC | 1 cut(s) | 3264 |
| BcnI | CCSGG | 3 cut(s) | 162, 167, 589 |
| BcoDI | GTCTC | 7 cut(s) | 537, 578, 887, 946, 1255, 2153, 3928 |
| BcuI | ACTAGT | 1 cut(s) | 3323 |
| BfmI | CTRYAG | 6 cut(s) | 888, 984, 993, 1459, 2461, 4292 |
| BfuAI | ACCTGC | 1 cut(s) | 3337 |
| BfuI | GTATCC | 1 cut(s) | 3264 |
| BmcAI | AGTACT | 1 cut(s) | 1385 |
| Bme18I | GGWCC | 7 cut(s) | 91, 423, 684, 767, 2119, 2846, 4236 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4242 |
| BmeT110I | CYCGRG | 2 cut(s) | 76, 506 |
| BmiI | GGNNCC | 9 cut(s) | 424, 803, 1303, 2847, 3713, 3874, 4101, 4237, 4529 |
| BmrI | ACTGGG | 1 cut(s) | 2080 |
| BmsI | GCATC | 9 cut(s) | 301, 358, 959, 2137, 2909, 2962, 3628, 3899, 4433 |
| BmtI | GCTAGC | 1 cut(s) | 243 |
| BmuI | ACTGGG | 1 cut(s) | 2080 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1428 |
| BpiI | GAAGAC | 7 cut(s) | 108, 492, 2016, 2325, 2579, 2882, 4075 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 898, 930 |
| BpmI | CTGGAG | 4 cut(s) | 711, 771, 1633, 2899 |
| Bpu10I | CCTNAGC | 2 cut(s) | 564, 2018 |
| BpuMI | CCSGG | 3 cut(s) | 162, 167, 589 |
| BsaAI | YACGTR | 3 cut(s) | 1362, 3041, 3894 |
| BsaBI | GATNNNNATC | 2 cut(s) | 612, 3099 |
| BsaHI | GRCGYC | 5 cut(s) | 42, 190, 546, 1605, 3032 |
| BsaI | GGTCTC | 2 cut(s) | 578, 3928 |
| BsaWI | WCCGGW | 4 cut(s) | 865, 1012, 2314, 2725 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 56, 86, 2872, 2902, 4537, 4567 |
| Bse118I | RCCGGY | 2 cut(s) | 1012, 3116 |
| Bse1I | ACTGG | 8 cut(s) | 694, 788, 1026, 1367, 1650, 1691, 2075, 4283 |
| Bse3DI | GCAATG | 1 cut(s) | 1217 |
| Bse8I | GATNNNNATC | 2 cut(s) | 612, 3099 |
| BseAI | TCCGGA | 1 cut(s) | 2314 |
| BseBI | CCWGG | 8 cut(s) | 89, 152, 807, 1349, 1416, 2117, 2605, 3298 |
| BseGI | GGATG | 9 cut(s) | 235, 373, 574, 1857, 2260, 2311, 2734, 2900, 3385 |
| BseJI | GATNNNNATC | 2 cut(s) | 612, 3099 |
| BseMI | GCAATG | 1 cut(s) | 1217 |
| BseMII | CTCAG | 5 cut(s) | 555, 1073, 1163, 3249, 3489 |
| BseNI | ACTGG | 8 cut(s) | 694, 788, 1026, 1367, 1650, 1691, 2075, 4283 |
| BsePI | GCGCGC | 1 cut(s) | 3301 |
| BseRI | GAGGAG | 7 cut(s) | 64, 134, 137, 353, 919, 2510, 3653 |
| BseSI | GKGCMC | 4 cut(s) | 804, 2423, 2536, 3233 |
| BseYI | CCCAGC | 3 cut(s) | 132, 653, 3869 |
| BsgI | GTGCAG | 4 cut(s) | 1899, 2657, 3348, 3850 |
| Bsh1236I | CGCG | 1 cut(s) | 3303 |
| BshNI | GGYRCC | 2 cut(s) | 801, 4527 |
| BshTI | ACCGGT | 1 cut(s) | 1012 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1207, 2536, 3233, 3476 |
| BsiHKCI | CYCGRG | 2 cut(s) | 76, 506 |
| BsiSI | CCGG | 9 cut(s) | 162, 167, 589, 866, 1013, 1799, 2315, 2726, 3117 |
| BslFI | GGGAC | 9 cut(s) | 436, 489, 491, 1161, 1270, 2087, 4249, 4579, 4643 |
| BsmAI | GTCTC | 7 cut(s) | 537, 578, 887, 946, 1255, 2153, 3928 |
| BsmBI | CGTCTC | 2 cut(s) | 537, 2153 |
| BsmFI | GGGAC | 9 cut(s) | 436, 489, 491, 1161, 1270, 2087, 4249, 4579, 4643 |
| BsmI | GAATGC | 5 cut(s) | 289, 733, 828, 1107, 2879 |
| Bso31I | GGTCTC | 2 cut(s) | 578, 3928 |
| BsoBI | CYCGRG | 2 cut(s) | 76, 506 |
| Bsp1286I | GDGCHC | 6 cut(s) | 804, 1207, 2423, 2536, 3233, 3476 |
| Bsp13I | TCCGGA | 1 cut(s) | 2314 |
| Bsp19I | CCATGG | 1 cut(s) | 3006 |
| BspCNI | CTCAG | 5 cut(s) | 556, 1072, 1164, 3250, 3488 |
| BspEI | TCCGGA | 1 cut(s) | 2314 |
| BspFNI | CGCG | 1 cut(s) | 3303 |
| BspHI | TCATGA | 2 cut(s) | 2706, 2818 |
| BspLI | GGNNCC | 9 cut(s) | 424, 803, 1303, 2847, 3713, 3874, 4101, 4237, 4529 |
| BspMAI | CTGCAG | 4 cut(s) | 892, 988, 997, 4296 |
| BspMI | ACCTGC | 1 cut(s) | 3337 |
| BspOI | GCTAGC | 1 cut(s) | 243 |
| BspPI | GGATC | 3 cut(s) | 203, 931, 1892 |
| BspQI | GCTCTTC | 1 cut(s) | 3514 |
| BspT107I | GGYRCC | 2 cut(s) | 801, 4527 |
| BspTNI | GGTCTC | 2 cut(s) | 578, 3928 |
| BsrBI | CCGCTC | 1 cut(s) | 4125 |
| BsrDI | GCAATG | 1 cut(s) | 1217 |
| BsrFI | RCCGGY | 2 cut(s) | 1012, 3116 |
| BsrI | ACTGG | 8 cut(s) | 694, 788, 1026, 1367, 1650, 1691, 2075, 4283 |
| BssAI | RCCGGY | 2 cut(s) | 1012, 3116 |
| BssHII | GCGCGC | 1 cut(s) | 3301 |
| BssNAI | GTATAC | 1 cut(s) | 3897 |
| BssNI | GRCGYC | 5 cut(s) | 42, 190, 546, 1605, 3032 |
| BssT1I | CCWWGG | 5 cut(s) | 418, 550, 1847, 3006, 4130 |
| Bst1107I | GTATAC | 1 cut(s) | 3897 |
| Bst2UI | CCWGG | 8 cut(s) | 89, 152, 807, 1349, 1416, 2117, 2605, 3298 |
| Bst6I | CTCTTC | 5 cut(s) | 519, 845, 985, 3514, 4247 |
| BstACI | GRCGYC | 5 cut(s) | 42, 190, 546, 1605, 3032 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 956, 992, 2929, 3471, 4421 |
| BstBAI | YACGTR | 3 cut(s) | 1362, 3041, 3894 |
| BstDSI | CCRYGG | 2 cut(s) | 2849, 3006 |
| BstF5I | GGATG | 9 cut(s) | 235, 373, 574, 1857, 2260, 2311, 2734, 2900, 3385 |
| BstFNI | CGCG | 1 cut(s) | 3303 |
| BstHHI | GCGC | 3 cut(s) | 2566, 3303, 3305 |
| BstMAI | GTCTC | 7 cut(s) | 537, 578, 887, 946, 1255, 2153, 3928 |
| BstNI | CCWGG | 8 cut(s) | 89, 152, 807, 1349, 1416, 2117, 2605, 3298 |
| BstNSI | RCATGY | 5 cut(s) | 239, 2990, 3857, 3903, 4683 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1428 |
| BstSFI | CTRYAG | 6 cut(s) | 888, 984, 993, 1459, 2461, 4292 |
| BstSLI | GKGCMC | 4 cut(s) | 804, 2423, 2536, 3233 |
| BstSNI | TACGTA | 1 cut(s) | 3894 |
| BstUI | CGCG | 1 cut(s) | 3303 |
| BstV2I | GAAGAC | 7 cut(s) | 108, 492, 2016, 2325, 2579, 2882, 4075 |
| BstX2I | RGATCY | 1 cut(s) | 923 |
| BstYI | RGATCY | 1 cut(s) | 923 |
| BstZ17I | GTATAC | 1 cut(s) | 3897 |
| BsuI | GTATCC | 1 cut(s) | 3264 |
| BtgI | CCRYGG | 2 cut(s) | 2849, 3006 |
| BtsCI | GGATG | 9 cut(s) | 235, 373, 574, 1857, 2260, 2311, 2734, 2900, 3385 |
| BtsI | GCAGTG | 5 cut(s) | 1205, 1868, 3127, 3781, 4061 |
| BveI | ACCTGC | 1 cut(s) | 3337 |
| CaiI | CAGNNNCTG | 2 cut(s) | 992, 4278 |
| CciI | TCATGA | 2 cut(s) | 2706, 2818 |
| CfoI | GCGC | 3 cut(s) | 2566, 3303, 3305 |
| Cfr10I | RCCGGY | 2 cut(s) | 1012, 3116 |
| CseI | GACGC | 4 cut(s) | 31, 198, 554, 2170 |
| CspAI | ACCGGT | 1 cut(s) | 1012 |
| DraI | TTTAAA | 2 cut(s) | 1921, 2764 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4242 |
| EaeI | YGGCCR | 4 cut(s) | 153, 1364, 2470, 2606 |
| Eam1104I | CTCTTC | 5 cut(s) | 519, 845, 985, 3514, 4247 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4242 |
| EarI | CTCTTC | 5 cut(s) | 519, 845, 985, 3514, 4247 |
| EciI | GGCGGA | 2 cut(s) | 58, 118 |
| Eco105I | TACGTA | 1 cut(s) | 3894 |
| Eco130I | CCWWGG | 5 cut(s) | 418, 550, 1847, 3006, 4130 |
| Eco31I | GGTCTC | 2 cut(s) | 578, 3928 |
| Eco32I | GATATC | 1 cut(s) | 879 |
| Eco47I | GGWCC | 7 cut(s) | 91, 423, 684, 767, 2119, 2846, 4236 |
| Eco57I | CTGAAG | 4 cut(s) | 795, 2010, 2409, 4626 |
| Eco88I | CYCGRG | 2 cut(s) | 76, 506 |
| EcoO109I | RGGNCCY | 2 cut(s) | 91, 4236 |
| EcoRI | GAATTC | 2 cut(s) | 3262, 4492 |
| EcoRII | CCWGG | 8 cut(s) | 87, 150, 805, 1347, 1414, 2115, 2603, 3296 |
| EcoRV | GATATC | 1 cut(s) | 879 |
| EcoT14I | CCWWGG | 5 cut(s) | 418, 550, 1847, 3006, 4130 |
| EcoT22I | ATGCAT | 2 cut(s) | 2902, 4426 |
| ErhI | CCWWGG | 5 cut(s) | 418, 550, 1847, 3006, 4130 |
| Esp3I | CGTCTC | 2 cut(s) | 537, 2153 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1609, 1641, 2769, 2801, 4099, 4131 |
| FaqI | GGGAC | 9 cut(s) | 436, 489, 491, 1161, 1270, 2087, 4249, 4579, 4643 |
| FauI | CCCGC | 3 cut(s) | 280, 3408, 3662 |
| FblI | GTMKAC | 2 cut(s) | 3320, 3896 |
| FokI | GGATG | 9 cut(s) | 242, 380, 581, 1864, 2267, 2298, 2741, 2887, 3392 |
| FspI | TGCGCA | 1 cut(s) | 2565 |
| GlaI | GCGC | 3 cut(s) | 2565, 3302, 3304 |
| GsaI | CCCAGC | 3 cut(s) | 136, 657, 3873 |
| GsuI | CTGGAG | 4 cut(s) | 711, 771, 1633, 2899 |
| HapII | CCGG | 9 cut(s) | 162, 167, 589, 866, 1013, 1799, 2315, 2726, 3117 |
| HgaI | GACGC | 4 cut(s) | 31, 198, 554, 2170 |
| HhaI | GCGC | 3 cut(s) | 2566, 3303, 3305 |
| Hin1I | GRCGYC | 5 cut(s) | 42, 190, 546, 1605, 3032 |
| Hin6I | GCGC | 3 cut(s) | 2564, 3301, 3303 |
| HinP1I | GCGC | 3 cut(s) | 2564, 3301, 3303 |
| HincII | GTYRAC | 3 cut(s) | 391, 3321, 4388 |
| HindII | GTYRAC | 3 cut(s) | 391, 3321, 4388 |
| HindIII | AAGCTT | 1 cut(s) | 3440 |
| HpaII | CCGG | 9 cut(s) | 162, 167, 589, 866, 1013, 1799, 2315, 2726, 3117 |
| HphI | GGTGA | 4 cut(s) | 347, 1027, 1817, 2156 |
| Hpy99I | CGWCG | 4 cut(s) | 14, 47, 50, 192 |
| HpyCH4IV | ACGT | 9 cut(s) | 1008, 1361, 1605, 3032, 3040, 3893, 4151, 4214, 4321 |
| HpySE526I | ACGT | 9 cut(s) | 1008, 1361, 1605, 3032, 3040, 3893, 4151, 4214, 4321 |
| Hsp92I | GRCGYC | 5 cut(s) | 42, 190, 546, 1605, 3032 |
| HspAI | GCGC | 3 cut(s) | 2564, 3301, 3303 |
| Kpn2I | TCCGGA | 1 cut(s) | 2314 |
| KroI | GCCGGC | 1 cut(s) | 3116 |
| KroNI | GCCGGC | 1 cut(s) | 3118 |
| LguI | GCTCTTC | 1 cut(s) | 3514 |
| LmnI | GCTCC | 6 cut(s) | 265, 1652, 2096, 2937, 3200, 3355 |
| LweI | GCATC | 9 cut(s) | 301, 358, 959, 2137, 2909, 2962, 3628, 3899, 4433 |
| MaeII | ACGT | 9 cut(s) | 1008, 1361, 1605, 3032, 3040, 3893, 4151, 4214, 4321 |
| MbiI | CCGCTC | 1 cut(s) | 4125 |
| MfeI | CAATTG | 5 cut(s) | 119, 2123, 3824, 4079, 4598 |
| MflI | RGATCY | 1 cut(s) | 923 |
| MhlI | GDGCHC | 6 cut(s) | 804, 1207, 2423, 2536, 3233, 3476 |
| MlsI | TGGCCA | 3 cut(s) | 1366, 2472, 2608 |
| MluNI | TGGCCA | 3 cut(s) | 1366, 2472, 2608 |
| MlyI | GAGTC | 8 cut(s) | 119, 538, 657, 787, 1183, 1292, 1339, 2987 |
| MmeI | TCCRAC | 5 cut(s) | 28, 1167, 1518, 2731, 3158 |
| Mox20I | TGGCCA | 3 cut(s) | 1366, 2472, 2608 |
| Mph1103I | ATGCAT | 2 cut(s) | 2902, 4426 |
| MroI | TCCGGA | 1 cut(s) | 2314 |
| MroNI | GCCGGC | 1 cut(s) | 3116 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1555, 2389 |
| MscI | TGGCCA | 3 cut(s) | 1366, 2472, 2608 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1210, 1989, 2787, 3792, 4030, 4684 |
| Msp20I | TGGCCA | 3 cut(s) | 1366, 2472, 2608 |
| MspA1I | CMGCKG | 4 cut(s) | 375, 540, 681, 3403 |
| MspI | CCGG | 9 cut(s) | 162, 167, 589, 866, 1013, 1799, 2315, 2726, 3117 |
| MunI | CAATTG | 5 cut(s) | 119, 2123, 3824, 4079, 4598 |
| Mva1269I | GAATGC | 5 cut(s) | 289, 733, 828, 1107, 2879 |
| MvaI | CCWGG | 8 cut(s) | 89, 152, 807, 1349, 1416, 2117, 2605, 3298 |
| MvnI | CGCG | 1 cut(s) | 3303 |
| NaeI | GCCGGC | 1 cut(s) | 3118 |
| NciI | CCSGG | 3 cut(s) | 162, 167, 589 |
| NcoI | CCATGG | 1 cut(s) | 3006 |
| NgoMIV | GCCGGC | 1 cut(s) | 3116 |
| NheI | GCTAGC | 1 cut(s) | 239 |
| NlaIV | GGNNCC | 9 cut(s) | 424, 803, 1303, 2847, 3713, 3874, 4101, 4237, 4529 |
| NmuCI | GTSAC | 7 cut(s) | 790, 1083, 1430, 1451, 1866, 3028, 4023 |
| NsbI | TGCGCA | 1 cut(s) | 2565 |
| NsiI | ATGCAT | 2 cut(s) | 2902, 4426 |
| NspI | RCATGY | 5 cut(s) | 239, 2990, 3857, 3903, 4683 |
| PaeI | GCATGC | 2 cut(s) | 239, 3857 |
| PagI | TCATGA | 2 cut(s) | 2706, 2818 |
| PauI | GCGCGC | 1 cut(s) | 3301 |
| PciI | ACATGT | 1 cut(s) | 2986 |
| PciSI | GCTCTTC | 1 cut(s) | 3514 |
| PctI | GAATGC | 5 cut(s) | 289, 733, 828, 1107, 2879 |
| PdiI | GCCGGC | 1 cut(s) | 3118 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1555, 2389 |
| PflFI | GACNNNGTC | 1 cut(s) | 3536 |
| PfoI | TCCNGGA | 1 cut(s) | 1347 |
| PinAI | ACCGGT | 1 cut(s) | 1012 |
| PleI | GAGTC | 8 cut(s) | 119, 537, 657, 787, 1182, 1291, 1338, 2987 |
| PpsI | GAGTC | 8 cut(s) | 119, 537, 657, 787, 1182, 1291, 1338, 2987 |
| Ppu21I | YACGTR | 3 cut(s) | 1362, 3041, 3894 |
| PpuMI | RGGWCCY | 2 cut(s) | 91, 4236 |
| PscI | ACATGT | 1 cut(s) | 2986 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1428 |
| PshBI | ATTAAT | 2 cut(s) | 612, 1545 |
| PsiI | TTATAA | 2 cut(s) | 2582, 3771 |
| Psp5II | RGGWCCY | 2 cut(s) | 91, 4236 |
| Psp6I | CCWGG | 8 cut(s) | 87, 150, 805, 1347, 1414, 2115, 2603, 3296 |
| PspFI | CCCAGC | 3 cut(s) | 132, 653, 3869 |
| PspGI | CCWGG | 8 cut(s) | 87, 150, 805, 1347, 1414, 2115, 2603, 3296 |
| PspN4I | GGNNCC | 9 cut(s) | 424, 803, 1303, 2847, 3713, 3874, 4101, 4237, 4529 |
| PspPPI | RGGWCCY | 2 cut(s) | 91, 4236 |
| PstI | CTGCAG | 4 cut(s) | 892, 988, 997, 4296 |
| PstNI | CAGNNNCTG | 2 cut(s) | 992, 4278 |
| PsuI | RGATCY | 1 cut(s) | 923 |
| PsyI | GACNNNGTC | 1 cut(s) | 3536 |
| PteI | GCGCGC | 1 cut(s) | 3301 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1210, 1989, 2787, 3792, 4030, 4684 |
| SalI | GTCGAC | 1 cut(s) | 3319 |
| SapI | GCTCTTC | 1 cut(s) | 3514 |
| ScaI | AGTACT | 1 cut(s) | 1385 |
| SchI | GAGTC | 8 cut(s) | 119, 538, 657, 787, 1183, 1292, 1339, 2987 |
| SduI | GDGCHC | 6 cut(s) | 804, 1207, 2423, 2536, 3233, 3476 |
| SfaNI | GCATC | 9 cut(s) | 301, 358, 959, 2137, 2909, 2962, 3628, 3899, 4433 |
| SfcI | CTRYAG | 6 cut(s) | 888, 984, 993, 1459, 2461, 4292 |
| SinI | GGWCC | 7 cut(s) | 91, 423, 684, 767, 2119, 2846, 4236 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1210, 1989, 2787, 3792, 4030, 4684 |
| SnaBI | TACGTA | 1 cut(s) | 3894 |
| SpeI | ACTAGT | 1 cut(s) | 3323 |
| SphI | GCATGC | 2 cut(s) | 239, 3857 |
| SspI | AATATT | 3 cut(s) | 1164, 2614, 3249 |
| StyI | CCWWGG | 5 cut(s) | 418, 550, 1847, 3006, 4130 |
| TaiI | ACGT | 9 cut(s) | 1011, 1364, 1608, 3035, 3043, 3896, 4154, 4217, 4324 |
| TaqI | TCGA | 8 cut(s) | 399, 447, 532, 705, 881, 1068, 1559, 3320 |
| TaqII | GACCGA | 2 cut(s) | 1418, 4373 |
| TatI | WGTACW | 3 cut(s) | 1157, 1383, 4018 |
| TauI | GCSGC | 3 cut(s) | 1932, 3712, 4125 |
| TseFI | GTSAC | 7 cut(s) | 790, 1083, 1430, 1451, 1866, 3028, 4023 |
| Tsp45I | GTSAC | 7 cut(s) | 790, 1083, 1430, 1451, 1866, 3028, 4023 |
| TspGWI | ACGGA | 3 cut(s) | 120, 934, 2838 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3536 |
| VneI | GTGCAC | 2 cut(s) | 2532, 3229 |
| VpaK11BI | GGWCC | 7 cut(s) | 91, 423, 684, 767, 2119, 2846, 4236 |
| VspI | ATTAAT | 2 cut(s) | 612, 1545 |
| XbaI | TCTAGA | 1 cut(s) | 4301 |
| XceI | RCATGY | 5 cut(s) | 239, 2990, 3857, 3903, 4683 |
| XmiI | GTMKAC | 2 cut(s) | 3320, 3896 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1555, 2389 |
| ZraI | GACGTC | 2 cut(s) | 1606, 3033 |
| ZrmI | AGTACT | 1 cut(s) | 1385 |
| Zsp2I | ATGCAT | 2 cut(s) | 2902, 4426 |