Rroxscaffold_1G00029270

DDT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003576
Physical Location & Seq
Forward (+)
37830596 .. 37832686
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029270.1

Sequence Viewer

Length: 1938 bp
ATGGAGTTCGTCGGGAGAAGTGTGAGGAAAGAGTTGAAAGGCGTCGTCGGAACTGTGAAATCCTACTCCGCCTCCTCCGGCTTCTTCCAGGTCCTCTTTGAAGACGGAAATTCCGAACAATTCGACTCCGCCCAGCTCTCTCTCCTCCTCCTCGCCGACCCCGCCCGAAAGCCCAGGAAACGACGCCGTACAGGTAATTCTGATCCCAATTACAGGGGGGAGGATGAGCATGCTAGTAGTAATTCTAGTCCAGAAAAGGAGCAGGGGATTGATTTGAATGCGGGTTTTAATTTTAGCTTAAATGATGCTGCTGACCTGAATGTTGGTGAGGAGAGGGATTGTATTGATTTGAATTTGGATGCCAGCGGTTGTGATTCTGTTGACAATTTCGATGGGCCTAGTTTGGGCCAAGGGACCAAGCGGAGGGGTTGCGATTTCGATTTGAATTTGGAGGTTGCTGAGGAGGGTGACAGTGAAGACAAGTTTAAAATTAGTCCCAAGTTTGAGAGGATTGAAGAGAGTCCAAGCAGCGGAGATGCCCAGGGAAATGTTGCTGAGGATGGGAATGTTAATGAGACCCGGAAGCACGTGTGTATTGATATTAATCAAGAAGTTCCCTTGAATGGCATTGAGTGTGCTGCTGCTGGGGAAGGACTCAGTAACGAGAACCAGTGGTCCAGTGGAGATATGAAGGTCGAATCTTCTCTTGGGGATTTGAATGCTAGTGCTGTTAAGGATAATGGTACTGTGGAAGATGGTCCTTCGGAAGCTGCTACCCCAGTGACTCATGGGCACCCAGGCGATTCCGCAAGTCCAAGCATTCAAAAAAGTAGCCGAAGGAAGAGAAGAAAGCTAGCGGATAATTTGATATCTAATACTACAGAGACAGTTTTGAGGAGAAGTTCTCGCAGAGGATCTGCTCAAAATCATGTTTCCGTTGCATCATCTGCTGTTAGTAATCCTGTGTCCTCTTCTGCAGCTACTGCAGTAACAGAGGACGTACCGGTGATTTCTGGCAGTGAAGAAGCCGATAAGCCTAGTGTTGCCCCTCAGAAGCTCGAATTACCTCCTTCGTCACAACATTTGAATTTAGAGGGCATTCCCGTACTTGACCTTTTTTCTATTTATGCGTGTTTGAGATCATTTAGTACAATATTGTTTCTGAGTCCCTTCAAGTTGGAGGATTTTGTGAGAGCACTGCAATGCAACTCTCCTAGTTCGTTATTTGATTCTGTTCATGTTTCTATTTTGCAAACGCTAAGAAAGCATTTGGAGTCCCTTTCAAATGAAGGTTCCGAATCTGCTTCTGATTGTCTAAGGAATCTTAATTGGGATTTCCTGGACTTAATTACGTGGCCAGTTTTCATGGTTGAGTACTTTCTGATTCATTGTTCAGGACTGAGACCTGGATTTGACCTCGGTCACTTTAAGCTATTAAAAAGTGACTACTACAGTCAGCCTGCTTCTCTAAAGGTTGAGATTCTTCGCTGTCTATGTGATGATTTGATAGAAGGGGAAGCCATAAAGTCGGAGATTAATAGAAGGTGTTCGACATCTGAACATGACATGGGTTTTGATCGTGATGTAAACTTTGACGTCTGCAAGAAAAGGAAGGCTTCTTTGCAAATTGCTGGTAGCTCCAGTTTGAATGATGAAAATGTTGATGAAACCCCTGACTGGAATAGTGATGAATGTTGCCTCTGTAAGATGGAAGGGAACTTAATTTGCTGTGATGGCTGTCCAGCAGCTTACCATTCAAGATGTGTAGGAGTTGTCAATGATCTTTTGCCAGAGGGTGATTGGTATTGCCCTGAATGTATGATTGATAGGCATAAACCTTGGATGAAACTCCGCAAGTCACTGCGAGGTGCAGAGTTATTAGGAATTGATCCTCATGGTCGGCTATATTTTAAAAGCTGCGGCTACCTGTTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031010 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

645

Amino Acids

70.68

Weight (kDa)

4.88

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 5 - 47 7e-07 PTM/DIR17-like, Tudor domain
DDT PF02791 369 - 423 3.6e-18 DDT domain
WHIM1 PF15612 478 - 513 1.2e-06 WSTF, HB1, Itc1p, MBD9 motif 1
PHD PF00628 565 - 606 3.5e-07 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1599
AccB1I GGYRCC 1 cut(s) 792
AclWI GGATC 3 cut(s) 197, 922, 1883
AcoI YGGCCR 1 cut(s) 1355
AcsI RAATTY 4 cut(s) 109, 352, 445, 1087
AcvI CACGTG 1 cut(s) 589
AcyI GRCGYC 3 cut(s) 42, 184, 1596
AfaI GTAC 6 cut(s) 190, 745, 1002, 1107, 1150, 1376
AfiI CCNNNNNNNGG 6 cut(s) 213, 404, 423, 530, 623, 1677
AflIII ACRYGT 1 cut(s) 588
AgeI ACCGGT 1 cut(s) 1003
AjnI CCWGG 6 cut(s) 87, 173, 540, 796, 1338, 1405
AjuI GAANNNNNNNTTGG 2 cut(s) 690, 722
AloI GAACNNNNNNTCC 2 cut(s) 659, 691
Alw21I GWGCWC 1 cut(s) 1198
Alw26I GTCTC 3 cut(s) 569, 878, 1396
AlwI GGATC 3 cut(s) 197, 922, 1883
AlwNI CAGNNNCTG 1 cut(s) 983
AoxI GGCC 3 cut(s) 395, 406, 1355
ApeKI GCWGC 8 cut(s) 308, 528, 638, 641, 770, 977, 1745, 1917
ApoI RAATTY 4 cut(s) 109, 352, 445, 1087
ArsI GACNNNNNNTTYG 2 cut(s) 1556, 1588
AseI ATTAAT 2 cut(s) 603, 1536
AsiGI ACCGGT 1 cut(s) 1003
Asp700I GAANNNNTTC 1 cut(s) 1546
AspS9I GGNCC 6 cut(s) 91, 395, 406, 414, 675, 758
AsuC2I CCSGG 1 cut(s) 580
AsuHPI GGTGA 4 cut(s) 338, 479, 1018, 1808
AsuNHI GCTAGC 1 cut(s) 853
AvaII GGWCC 4 cut(s) 91, 414, 675, 758
BaeGI GKGCMC 1 cut(s) 795
BalI TGGCCA 1 cut(s) 1357
BanI GGYRCC 1 cut(s) 792
BbrPI CACGTG 1 cut(s) 589
BbsI GAAGAC 2 cut(s) 108, 483
Bbv12I GWGCWC 1 cut(s) 1198
BbvCI CCTCAGC 2 cut(s) 459, 555
BbvI GCAGC 8 cut(s) 295, 540, 625, 628, 757, 989, 1757, 1904
BccI CCATC 5 cut(s) 386, 554, 749, 1702, 1727
BceAI ACGGC 1 cut(s) 171
BciT130I CCWGG 6 cut(s) 89, 175, 542, 798, 1340, 1407
BcnI CCSGG 1 cut(s) 580
BcoDI GTCTC 3 cut(s) 569, 878, 1396
BfaI CTAG 7 cut(s) 234, 246, 399, 723, 854, 1038, 1215
BfmI CTRYAG 4 cut(s) 879, 975, 984, 1450
BisI GCNGC 9 cut(s) 309, 529, 639, 642, 771, 978, 1746, 1918, 1921
BlsI GCNGC 9 cut(s) 310, 530, 640, 643, 772, 979, 1747, 1919, 1922
BmcAI AGTACT 1 cut(s) 1376
Bme1390I CCNGG 7 cut(s) 89, 175, 542, 580, 798, 1340, 1407
Bme18I GGWCC 4 cut(s) 91, 414, 675, 758
BmgT120I GGNCC 6 cut(s) 91, 395, 406, 414, 675, 758
BmiI GGNNCC 3 cut(s) 415, 794, 1294
BmrFI CCNGG 7 cut(s) 89, 175, 542, 580, 798, 1340, 1407
BmrI ACTGGG 1 cut(s) 773
BmsI GCATC 4 cut(s) 295, 349, 526, 950
BmtI GCTAGC 1 cut(s) 857
BmuI ACTGGG 1 cut(s) 773
BoxI GACNNNNGTC 1 cut(s) 1419
BpiI GAAGAC 2 cut(s) 108, 483
BplI GAGNNNNNCTC 2 cut(s) 889, 921
BpmI CTGGAG 1 cut(s) 1624
Bpu10I CCTNAGC 2 cut(s) 459, 555
BpuMI CCSGG 1 cut(s) 580
BsaAI YACGTR 2 cut(s) 589, 1353
BsaBI GATNNNNATC 1 cut(s) 603
BsaHI GRCGYC 3 cut(s) 42, 184, 1596
BsaI GGTCTC 2 cut(s) 569, 1396
BsaJI CCNNGG 7 cut(s) 173, 409, 540, 541, 796, 1417, 1838
BsaWI WCCGGW 1 cut(s) 1003
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 6 cut(s) 213, 404, 423, 530, 623, 1677
Bse118I RCCGGY 1 cut(s) 1003
Bse1I ACTGG 6 cut(s) 670, 678, 779, 1358, 1641, 1682
Bse3DI GCAATG 1 cut(s) 1208
Bse8I GATNNNNATC 1 cut(s) 603
BseBI CCWGG 6 cut(s) 89, 175, 542, 798, 1340, 1407
BseDI CCNNGG 7 cut(s) 173, 409, 540, 541, 796, 1417, 1838
BseGI GGATG 4 cut(s) 229, 364, 565, 1848
BseJI GATNNNNATC 1 cut(s) 603
BseLI CCNNNNNNNGG 6 cut(s) 213, 404, 423, 530, 623, 1677
BseMI GCAATG 1 cut(s) 1208
BseMII CTCAG 6 cut(s) 450, 546, 670, 1064, 1154, 1391
BseNI ACTGG 6 cut(s) 670, 678, 779, 1358, 1641, 1682
BseRI GAGGAG 7 cut(s) 64, 134, 137, 140, 344, 476, 910
BseSI GKGCMC 1 cut(s) 795
BseXI GCAGC 8 cut(s) 295, 540, 625, 628, 757, 989, 1757, 1904
BseYI CCCAGC 2 cut(s) 132, 644
BsgI GTGCAG 1 cut(s) 1890
BshFI GGCC 3 cut(s) 397, 408, 1357
BshNI GGYRCC 1 cut(s) 792
BshTI ACCGGT 1 cut(s) 1003
BsiHKAI GWGCWC 1 cut(s) 1198
BsiSI CCGG 3 cut(s) 78, 580, 1004
BslFI GGGAC 4 cut(s) 427, 480, 1152, 1261
BslI CCNNNNNNNGG 6 cut(s) 213, 404, 423, 530, 623, 1677
BsmAI GTCTC 3 cut(s) 569, 878, 1396
BsmFI GGGAC 4 cut(s) 427, 480, 1152, 1261
BsmI GAATGC 4 cut(s) 283, 724, 819, 1098
BsnI GGCC 3 cut(s) 397, 408, 1357
Bso31I GGTCTC 2 cut(s) 569, 1396
Bsp1286I GDGCHC 2 cut(s) 795, 1198
Bsp143I GATC 6 cut(s) 202, 914, 1139, 1576, 1780, 1888
BspANI GGCC 3 cut(s) 397, 408, 1357
BspCNI CTCAG 6 cut(s) 451, 547, 669, 1063, 1155, 1392
BspLI GGNNCC 3 cut(s) 415, 794, 1294
BspMAI CTGCAG 2 cut(s) 979, 988
BspOI GCTAGC 1 cut(s) 857
BspPI GGATC 3 cut(s) 197, 922, 1883
BspT107I GGYRCC 1 cut(s) 792
BspTNI GGTCTC 2 cut(s) 569, 1396
BsrDI GCAATG 1 cut(s) 1208
BsrFI RCCGGY 1 cut(s) 1003
BsrI ACTGG 6 cut(s) 670, 678, 779, 1358, 1641, 1682
BssAI RCCGGY 1 cut(s) 1003
BssECI CCNNGG 7 cut(s) 173, 409, 540, 541, 796, 1417, 1838
BssMI GATC 6 cut(s) 202, 914, 1139, 1576, 1780, 1888
BssNI GRCGYC 3 cut(s) 42, 184, 1596
BssT1I CCWWGG 2 cut(s) 409, 1838
Bst2UI CCWGG 6 cut(s) 89, 175, 542, 798, 1340, 1407
Bst4CI ACNGT 5 cut(s) 55, 473, 748, 889, 1454
Bst6I CTCTTC 3 cut(s) 510, 836, 976
BstACI GRCGYC 3 cut(s) 42, 184, 1596
BstAPI GCANNNNNTGC 2 cut(s) 947, 983
BstBAI YACGTR 2 cut(s) 589, 1353
BstC8I GCNNGC 4 cut(s) 231, 364, 855, 1461
BstDEI CTNAG 8 cut(s) 459, 555, 656, 1050, 1163, 1259, 1316, 1400
BstF5I GGATG 4 cut(s) 229, 364, 565, 1848
BstKTI GATC 6 cut(s) 205, 917, 1142, 1579, 1783, 1891
BstMAI GTCTC 3 cut(s) 569, 878, 1396
BstMBI GATC 6 cut(s) 202, 914, 1139, 1576, 1780, 1888
BstMWI GCNNNNNNNGC 5 cut(s) 161, 947, 983, 1264, 1734
BstNI CCWGG 6 cut(s) 89, 175, 542, 798, 1340, 1407
BstNSI RCATGY 1 cut(s) 233
BstPAI GACNNNNGTC 1 cut(s) 1419
BstSCI CCNGG 7 cut(s) 87, 173, 540, 578, 796, 1338, 1405
BstSFI CTRYAG 4 cut(s) 879, 975, 984, 1450
BstSLI GKGCMC 1 cut(s) 795
BstV1I GCAGC 8 cut(s) 295, 540, 625, 628, 757, 989, 1757, 1904
BstV2I GAAGAC 2 cut(s) 108, 483
BstX2I RGATCY 1 cut(s) 914
BstYI RGATCY 1 cut(s) 914
BsuRI GGCC 3 cut(s) 397, 408, 1357
BtsCI GGATG 4 cut(s) 229, 364, 565, 1848
BtsI GCAGTG 3 cut(s) 1024, 1196, 1859
BtsIMutI CAGTG 7 cut(s) 478, 677, 685, 786, 1024, 1196, 1859
Cac8I GCNNGC 4 cut(s) 231, 364, 855, 1461
CaiI CAGNNNCTG 1 cut(s) 983
Cfr10I RCCGGY 1 cut(s) 1003
Cfr13I GGNCC 6 cut(s) 91, 395, 406, 414, 675, 758
CseI GACGC 2 cut(s) 31, 192
Csp6I GTAC 6 cut(s) 189, 744, 1001, 1106, 1149, 1375
CspAI ACCGGT 1 cut(s) 1003
CviAII CATG 8 cut(s) 230, 788, 929, 1238, 1366, 1562, 1567, 1895
CviQI GTAC 6 cut(s) 189, 744, 1001, 1106, 1149, 1375
DdeI CTNAG 8 cut(s) 459, 555, 656, 1050, 1163, 1259, 1316, 1400
DpnI GATC 6 cut(s) 204, 916, 1141, 1578, 1782, 1890
DpnII GATC 6 cut(s) 202, 914, 1139, 1576, 1780, 1888
DraI TTTAAA 2 cut(s) 487, 1912
EaeI YGGCCR 1 cut(s) 1355
Eam1104I CTCTTC 3 cut(s) 510, 836, 976
EarI CTCTTC 3 cut(s) 510, 836, 976
EciI GGCGGA 2 cut(s) 58, 118
Eco130I CCWWGG 2 cut(s) 409, 1838
Eco31I GGTCTC 2 cut(s) 569, 1396
Eco32I GATATC 1 cut(s) 870
Eco47I GGWCC 4 cut(s) 91, 414, 675, 758
Eco72I CACGTG 1 cut(s) 589
EcoO109I RGGNCCY 1 cut(s) 91
EcoRII CCWGG 6 cut(s) 87, 173, 540, 796, 1338, 1405
EcoRV GATATC 1 cut(s) 870
EcoT14I CCWWGG 2 cut(s) 409, 1838
ErhI CCWWGG 2 cut(s) 409, 1838
FaeI CATG 8 cut(s) 233, 791, 932, 1241, 1369, 1565, 1570, 1898
FalI AAGNNNNNCTT 2 cut(s) 1600, 1632
FaqI GGGAC 4 cut(s) 427, 480, 1152, 1261
FatI CATG 8 cut(s) 229, 787, 928, 1237, 1365, 1561, 1566, 1894
FauI CCCGC 2 cut(s) 169, 274
Fnu4HI GCNGC 9 cut(s) 309, 529, 639, 642, 771, 978, 1746, 1918, 1921
FokI GGATG 4 cut(s) 236, 371, 572, 1855
Fsp4HI GCNGC 9 cut(s) 309, 529, 639, 642, 771, 978, 1746, 1918, 1921
FspBI CTAG 7 cut(s) 234, 246, 399, 723, 854, 1038, 1215
GluI GCNGC 9 cut(s) 309, 529, 639, 642, 771, 978, 1746, 1918, 1921
GsaI CCCAGC 2 cut(s) 136, 648
GsuI CTGGAG 1 cut(s) 1624
HaeIII GGCC 3 cut(s) 397, 408, 1357
HapII CCGG 3 cut(s) 78, 580, 1004
HgaI GACGC 2 cut(s) 31, 192
Hin1I GRCGYC 3 cut(s) 42, 184, 1596
Hin1II CATG 8 cut(s) 233, 791, 932, 1241, 1369, 1565, 1570, 1898
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HpaII CCGG 3 cut(s) 78, 580, 1004
HphI GGTGA 4 cut(s) 338, 479, 1018, 1808
Hpy166II GTNNAC 2 cut(s) 382, 1588
Hpy188III TCNNGA 6 cut(s) 13, 251, 608, 1395, 1580, 1758
Hpy8I GTNNAC 2 cut(s) 382, 1588
Hpy99I CGWCG 4 cut(s) 14, 47, 50, 186
HpyCH4III ACNGT 5 cut(s) 55, 473, 748, 889, 1454
HpyCH4IV ACGT 4 cut(s) 588, 999, 1352, 1596
HpyCH4V TGCA 9 cut(s) 941, 977, 986, 1201, 1206, 1252, 1602, 1624, 1871
HpyF10VI GCNNNNNNNGC 5 cut(s) 161, 947, 983, 1264, 1734
HpyF3I CTNAG 8 cut(s) 459, 555, 656, 1050, 1163, 1259, 1316, 1400
HpySE526I ACGT 4 cut(s) 588, 999, 1352, 1596
Hsp92I GRCGYC 3 cut(s) 42, 184, 1596
Hsp92II CATG 8 cut(s) 233, 791, 932, 1241, 1369, 1565, 1570, 1898
Kzo9I GATC 6 cut(s) 202, 914, 1139, 1576, 1780, 1888
LmnI GCTCC 2 cut(s) 259, 1643
Lsp1109I GCAGC 8 cut(s) 295, 540, 625, 628, 757, 989, 1757, 1904
LweI GCATC 4 cut(s) 295, 349, 526, 950
MaeI CTAG 7 cut(s) 234, 246, 399, 723, 854, 1038, 1215
MaeII ACGT 4 cut(s) 588, 999, 1352, 1596
MaeIII GTNAC 8 cut(s) 467, 659, 781, 988, 1074, 1421, 1442, 1857
MalI GATC 6 cut(s) 204, 916, 1141, 1578, 1782, 1890
MboI GATC 6 cut(s) 202, 914, 1139, 1576, 1780, 1888
MflI RGATCY 1 cut(s) 914
MhlI GDGCHC 2 cut(s) 795, 1198
MlsI TGGCCA 1 cut(s) 1357
MluNI TGGCCA 1 cut(s) 1357
MlyI GAGTC 6 cut(s) 119, 529, 648, 778, 1174, 1283
MmeI TCCRAC 3 cut(s) 28, 1158, 1509
Mox20I TGGCCA 1 cut(s) 1357
MroXI GAANNNNTTC 1 cut(s) 1546
MscI TGGCCA 1 cut(s) 1357
MslI CAYNNNNRTG 1 cut(s) 1201
Msp20I TGGCCA 1 cut(s) 1357
MspA1I CMGCKG 2 cut(s) 366, 531
MspI CCGG 3 cut(s) 78, 580, 1004
MspR9I CCNGG 7 cut(s) 89, 175, 542, 580, 798, 1340, 1407
Mva1269I GAATGC 4 cut(s) 283, 724, 819, 1098
MvaI CCWGG 6 cut(s) 89, 175, 542, 798, 1340, 1407
MwoI GCNNNNNNNGC 5 cut(s) 161, 947, 983, 1264, 1734
NciI CCSGG 1 cut(s) 580
NdeII GATC 6 cut(s) 202, 914, 1139, 1576, 1780, 1888
NheI GCTAGC 1 cut(s) 853
NlaIII CATG 8 cut(s) 233, 791, 932, 1241, 1369, 1565, 1570, 1898
NlaIV GGNNCC 3 cut(s) 415, 794, 1294
NmuCI GTSAC 6 cut(s) 467, 781, 1074, 1421, 1442, 1857
NspI RCATGY 1 cut(s) 233
PaeI GCATGC 1 cut(s) 233
PasI CCCWGGG 1 cut(s) 541
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 4 cut(s) 283, 724, 819, 1098
PdmI GAANNNNTTC 1 cut(s) 1546
PfeI GAWTC 8 cut(s) 374, 698, 803, 1229, 1298, 1321, 1384, 1480
PfoI TCCNGGA 1 cut(s) 1338
PinAI ACCGGT 1 cut(s) 1003
PkrI GCNGC 9 cut(s) 310, 530, 640, 643, 772, 979, 1747, 1919, 1922
PleI GAGTC 6 cut(s) 119, 528, 648, 778, 1173, 1282
PmaCI CACGTG 1 cut(s) 589
PmlI CACGTG 1 cut(s) 589
PpsI GAGTC 6 cut(s) 119, 528, 648, 778, 1173, 1282
Ppu21I YACGTR 2 cut(s) 589, 1353
PpuMI RGGWCCY 1 cut(s) 91
PshAI GACNNNNGTC 1 cut(s) 1419
PshBI ATTAAT 2 cut(s) 603, 1536
Psp5II RGGWCCY 1 cut(s) 91
Psp6I CCWGG 6 cut(s) 87, 173, 540, 796, 1338, 1405
PspCI CACGTG 1 cut(s) 589
PspFI CCCAGC 2 cut(s) 132, 644
PspGI CCWGG 6 cut(s) 87, 173, 540, 796, 1338, 1405
PspN4I GGNNCC 3 cut(s) 415, 794, 1294
PspPI GGNCC 6 cut(s) 91, 395, 406, 414, 675, 758
PspPPI RGGWCCY 1 cut(s) 91
PstI CTGCAG 2 cut(s) 979, 988
PstNI CAGNNNCTG 1 cut(s) 983
PsuI RGATCY 1 cut(s) 914
RsaI GTAC 6 cut(s) 190, 745, 1002, 1107, 1150, 1376
RsaNI GTAC 6 cut(s) 189, 744, 1001, 1106, 1149, 1375
RseI CAYNNNNRTG 1 cut(s) 1201
SatI GCNGC 9 cut(s) 309, 529, 639, 642, 771, 978, 1746, 1918, 1921
Sau3AI GATC 6 cut(s) 202, 914, 1139, 1576, 1780, 1888
Sau96I GGNCC 6 cut(s) 91, 395, 406, 414, 675, 758
ScaI AGTACT 1 cut(s) 1376
SchI GAGTC 6 cut(s) 119, 529, 648, 778, 1174, 1283
ScrFI CCNGG 7 cut(s) 89, 175, 542, 580, 798, 1340, 1407
SduI GDGCHC 2 cut(s) 795, 1198
SfaNI GCATC 4 cut(s) 295, 349, 526, 950
SfcI CTRYAG 4 cut(s) 879, 975, 984, 1450
SinI GGWCC 4 cut(s) 91, 414, 675, 758
SmiMI CAYNNNNRTG 1 cut(s) 1201
SphI GCATGC 1 cut(s) 233
SspI AATATT 1 cut(s) 1155
SspMI CTAG 7 cut(s) 234, 246, 399, 723, 854, 1038, 1215
StyD4I CCNGG 7 cut(s) 87, 173, 540, 578, 796, 1338, 1405
StyI CCWWGG 2 cut(s) 409, 1838
TaaI ACNGT 5 cut(s) 55, 473, 748, 889, 1454
TaiI ACGT 4 cut(s) 591, 1002, 1355, 1599
TaqI TCGA 6 cut(s) 123, 390, 438, 696, 1059, 1550
TaqII GACCGA 1 cut(s) 1409
TatI WGTACW 2 cut(s) 1148, 1374
TauI GCSGC 1 cut(s) 1923
TfiI GAWTC 8 cut(s) 374, 698, 803, 1229, 1298, 1321, 1384, 1480
TscAI CASTG 7 cut(s) 478, 677, 685, 786, 1024, 1203, 1866
TseFI GTSAC 6 cut(s) 467, 781, 1074, 1421, 1442, 1857
TseI GCWGC 8 cut(s) 308, 528, 638, 641, 770, 977, 1745, 1917
Tsp45I GTSAC 6 cut(s) 467, 781, 1074, 1421, 1442, 1857
TspDTI ATGAA 9 cut(s) 704, 1226, 1302, 1354, 1376, 1668, 1680, 1704, 1859
TspGWI ACGGA 2 cut(s) 120, 925
TspRI CASTG 7 cut(s) 478, 677, 685, 786, 1024, 1203, 1866
VpaK11BI GGWCC 4 cut(s) 91, 414, 675, 758
VspI ATTAAT 2 cut(s) 603, 1536
XapI RAATTY 4 cut(s) 109, 352, 445, 1087
XceI RCATGY 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 2 cut(s) 677, 1797
XmnI GAANNNNTTC 1 cut(s) 1546
XspI CTAG 7 cut(s) 234, 246, 399, 723, 854, 1038, 1215
ZraI GACGTC 1 cut(s) 1597
ZrmI AGTACT 1 cut(s) 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.