Rh5AG338600

DDT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003576
Physical Location & Seq
Reverse (-)
54791342 .. 54805272
13931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG338600.1

Sequence Viewer

Length: 3921 bp
ATGGAGTTCGTCGGGAGAAGTGTGAGGAAAGAGTTGAAAGGCGTCGTCGGAACTGTGAAATCCTACTCCGCCTCCTCCGGCTTCTTCCAGGTCCTCTTTGAAGACGGAAATTCCGAACAATTGGACTCCGCCCAGCTCTCTCTCCTCCTCCTCGCCGACCCCGGCCCGGCCCGAAAGCCCAAGAAACGACGCCGTACAGGTAATTCTGATCCCAATTACAGGGGGGAGGATGAGCATGCTAGTAGTAATTCTAGTCCAGAAAAGGAGCAGGGGATTGATTTGAATGCGGGCTTTAATTTTAGCTTAAATGATGCTTCTGACCTGAATGTTGTTGGTGAGGAGAGAGATTGTATTGATTTGAATTTGGATGCCAGCGGTTGTGATTCTGTTGACAATTTCGATGGGCCTAGTTTGGGCCAAGGGACCAAGCGGAGGGGTTGCGATTTCGATTTGAATTTGGAGGTTGCTGAGGAGGGGGACAGTGAAGACAAGTTTAAAATTAGTCCCAAGTTTGAGAGGATTGAAGAGAGTCGAAGCAGCGGAGACGCCCGAGGAAATGTTGCTGAGGATGGGAATGTTAATGAGACCCGGAAGCAAGTGTGTATTGATATTAATCAAGAAGTTCCCTTGAATGGCATTGAGTGTGCTGCTGTTGGGGAAGGACTCGGTAATGAGAACCGGTGGTCCAGTGGAGATATGAAGGTCGAATCTTCTCTTGGGGATTTGAATGCTAGTGCTGTTAAGGATAATGGTATGGTGGAAGATGGTCCTTCTGAAGCTGCTACTCCAGTGACTCATGGGCACCCAGGCGATTCAGCAAGTCCAACCATTCAAAAAAGTAGCCGAAGGAAGAGAAGAAAGCTACCGGATAATTTGATATCAAATACTGCAGAGACAGTTTTGAGGAGAAGTTCTCGCAGAGGATCTGCTCGGAATCATGTTTCCGTTGCATCATCTGCTGTTAGTAATCCTGTGTCCTCTTCTGCAGCTACTGCAGTAACAGAGGACGTACCGGTGATTTCTGGCAGTGAAGAAGCCGATAAGCCTAGTGTTGCCCCTCAGAAGCTCGAATTACCTCCTTCGTCACAACATTTGAATTTAGAGGGCATTCCCGTACTTGACCTTTTTTCTATTTATGCCTGTTTGAGATCATTTAGTACAATATTGTTTCTGAGTCCCTTCAAGTTGGAGGATTTTGTGAGAGCACTGCAATGCAACTCTCCTAGTTTGTTATTTGATTCTGTTCATGTTTCTATTTTGCAAACGCTAAGAAAGCATTTGGAGTCCCTTTCAAATGAAGGTTCCGAATCTGCTTCTGATTGTCTAAGGAGTCTTAATTGGGATTTCCTGGACTTAATTACGTGGCCAGTTTTCATGGTTGAGTACTTTCTGATTCATTGTTCAGGACTGAAACCTGGATTTGACCTCGGTCACTTTAAGCTATTAAAAAGTGACTACTACAGTCAGCCTGCTTCTCTAAAGGTTGAGATTCTTCGCTGTCTATGTGATGATTTGATAGAAGGGGAAGCCATAAAGTCGGAGATTAATAGAAGATGTTCGACATCTGAACATGACATGGGTTTTGATCGTGATGTAAACTTTGACGTCTGCAAGAAAAGGAAGGCTTCTGCACAAATTGCTGGTAGCTCCAGTTTGAATGATGAAAATGTTGATGAAACCCCTGACTGGAATAGTGATGAATGTTGCCTCTGTAAGATGGAAGGGAACTTAATATGCTGTGATGGCTGTCCAGCAGCTTACCATTCAAGATGTGTAGGAGTTGTCAATGATCTTTTGCCGGAGGGTGATTGGTATTGCCCTGAATGTATGATTGATAGGCACAAACCTTGGATGAAACTCCGCAAGTCACTGCGAGGTGCAGAGCTATTAGGAATTGATCCTCATGGTCGGCTATATTTTAAAAGCTGCGGCTACCTGTTGGTATCTGGTTTTTGTGATGATGAATCTGCATTTAATTACTATCACAGAGATGATCTAAACAAGATTATTGAAGTGCTAAGGTCTTCAGAATTTTCCTATGGTGGGATATTATTGGGAATCTATAAGCACTGGGACAATCCTACTACCTTTAATGGAGCAATTAGTAGCAAGCCCCTGGACCAATTGGAATTTTCAGAAACAGGTGATGCTAAAAATGAGACGCATGAGGATAGAAAACTGCAAGAGAAGTTTTGTAATCTCGGTTCTGATGTTTCAAATTCTGTTCAAGTGCTGAGAAGGACTGTCATTCAGGATGATTCAAATAATCTTGCTGATATTTCAAATCAATCAGTTTTGGTCAGAAAACTTCATCCTGAAGACTGTTCTTTGACATCTACTTGCTTCGATGTCAGACAAGAGAGCAACGGTTCTATTGATCCTGGAAAAATTTCATCTGCTATAACCACTAGAAAAGAGGGCACTTCAGAAGTGGATTGTGGAATTGATTACATGAACTACTACAGTTTTGGCCAAATTGCTTCATCTGTTGCAGAGGAGTTGTCTAAATCATCAGAAAAGAATAAGGAAGGTGCACTAAATACAGTAGATGAAATAATATCTGCGCAGATGAAGACCATTATAAAAAAATCTTCCAAGTTTTCCTGGCCAAATATTGAGAACTTAAATATAGATGTGCAGAAAGAGAAATGTGGGTGGTGCTTTTCTTGCAAATATCCTGCTGATGATAGGGATTGCTTGCTTATCATGAGTAAGCTGCCTTTACCGGATGTTTCCAAGACTGATGTAGTTGGACTTCAATTGAAAAAAATTCCCAAAGATCATCTTAATGATCTCAGCTGTCAAATTTTGTCCATTCATGATCACCTGCTTGGGCTTCTGTTGGGTCCGTGGTTGAACCCCCATCATACAGAATGCTGGCGGAATAGTCTTCTTAATGCATGCGATCTTGCCTCTGTTAAGCATTTACTGCTCCTTCTAGTGGAAAATTTGCATCATCGTGCATTGTCCGCAGATTGGTTGAAACATGTGGACTCTGTTGTTACCATGGGTTCAGCTTCTCATGTTGTGACTTCATTACGTGCATACTCAAAGAACATGAATAGCAGAAAGAGGCCCAAGTTTTCTGATATTGATTCAAATCCATCTTCAAATGCCGGCAGTGGATTGGGAATGTTTTGGTGGAGGGGTGGCAGGCTTTCTCGTCAGGTGTTTGGTTGGAAGATTTTACCTCGCTCCTTGACTTCTAAGGCTGCCAGACAAGGTGGGTGCACAAAAATAATGGGAATATTGTATCCTGAGAATTCAGAATATGCAAAGAGAAGCAAATACATTGCCTGGCGAGCTACTGTTGAGATGTCAACTAGTGCAGAACAGCTTGCTTTGCAGGTTAGGGAGCTTTATTCAAACATTAGGTGGGATGATATTGAGAACACACACCTGCTGCCTACATTGGACAAGGAATCTACAAAATCAATCAAGCTTTTCAGGAAAGTTATTGTCCGCAGGAAGTGCTCAGAAAAGGGAGTGGTTAAGTATCTTCTTGATTTTGGCAAGAGAAGAGCAATCCCCGACATTGTCAGGAAACATGGTTCTGTGCTTGAAGAACCATCTAATGAGAGGAAAAAGTATTGGCTTGAAGAATCATATCTTCCTCTGCATCTTTTGAAAAATTTTGAGGAGAGAAGAATTGCCCGCAAGTCTAGTGATGGGAAGTCTGGTAAAGTTCTTGCAGTTGGTAGAGTAATGCGGCCCTCGGATGAAAAGGGATTTGCTTATTTGTTTTCCAAAGCAGAAAGATCAGAGTATTATAAGTGTGGACACTGCCACAAAGATGTCCTGATAAGGGAAGCTGTGAGTTGTCAATTGTGCAGAGGTGTGGTTTCCTCCTTCCTTTTGTTTTTTCCCTTCATATTGTTGTTATGCTCTTTTGAAATATTGCTAGGTACAATATGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031010 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

1306

Amino Acids

145.61

Weight (kDa)

6.0

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 5 - 48 2.6e-07 PTM/DIR17-like, Tudor domain
DDT PF02791 372 - 426 3.8e-17 DDT domain
WHIM1 PF15612 481 - 516 2.7e-06 WSTF, HB1, Itc1p, MBD9 motif 1
PHD PF00628 568 - 609 8.1e-07 PHD-finger
Chromo_PTM PF24294 1147 - 1219 4.7e-27 Membrane-bound transcription factor PTM, chromo domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2582, 3771
AarI CACCTGC 2 cut(s) 2835, 3408
AatII GACGTC 1 cut(s) 1608
Acc16I TGCGCA 1 cut(s) 2565
Acc36I ACCTGC 3 cut(s) 2835, 3337, 3408
AccB1I GGYRCC 1 cut(s) 801
AclWI GGATC 4 cut(s) 203, 931, 1892, 2372
AcoI YGGCCR 3 cut(s) 1364, 2470, 2606
AcuI CTGAAG 4 cut(s) 795, 2010, 2337, 2409
AcyI GRCGYC 4 cut(s) 42, 190, 546, 1605
AfaI GTAC 6 cut(s) 196, 1011, 1116, 1159, 1385, 3907
AflIII ACRYGT 1 cut(s) 2986
AgeI ACCGGT 2 cut(s) 678, 1012
AhlI ACTAGT 1 cut(s) 3323
AjnI CCWGG 8 cut(s) 87, 805, 1347, 1414, 2115, 2380, 2603, 3296
AjuI GAANNNNNNNTTGG 2 cut(s) 699, 731
AloI GAACNNNNNNTCC 4 cut(s) 668, 700, 3535, 3567
Alw21I GWGCWC 4 cut(s) 1207, 2536, 3233, 3476
Alw26I GTCTC 4 cut(s) 537, 578, 887, 2153
Alw44I GTGCAC 2 cut(s) 2532, 3229
AlwI GGATC 4 cut(s) 203, 931, 1892, 2372
AlwNI CAGNNNCTG 1 cut(s) 992
Ama87I CYCGRG 1 cut(s) 549
AoxI GGCC 9 cut(s) 163, 168, 404, 415, 1364, 2470, 2606, 3074, 3710
ApaLI GTGCAC 2 cut(s) 2532, 3229
ApeKI GCWGC 9 cut(s) 537, 647, 779, 986, 1754, 1926, 2716, 3212, 3403
ArsI GACNNNNNNTTYG 2 cut(s) 1565, 1597
AseI ATTAAT 2 cut(s) 612, 1545
AsiGI ACCGGT 2 cut(s) 678, 1012
Asp700I GAANNNNTTC 2 cut(s) 1555, 2389
AspLEI GCGC 1 cut(s) 2566
AsuC2I CCSGG 3 cut(s) 162, 167, 589
AsuHPI GGTGA 5 cut(s) 347, 1027, 1817, 2156, 2816
AvaI CYCGRG 1 cut(s) 549
AvaII GGWCC 6 cut(s) 91, 423, 684, 767, 2119, 2846
BaeGI GKGCMC 4 cut(s) 804, 2423, 2536, 3233
BalI TGGCCA 3 cut(s) 1366, 2472, 2608
BanI GGYRCC 1 cut(s) 801
BarI GAAGNNNNNNTAC 2 cut(s) 2739, 2771
BbsI GAAGAC 6 cut(s) 108, 492, 2016, 2325, 2579, 2882
Bbv12I GWGCWC 4 cut(s) 1207, 2536, 3233, 3476
BbvCI CCTCAGC 2 cut(s) 468, 564
BbvI GCAGC 9 cut(s) 549, 634, 766, 998, 1766, 1913, 2703, 3199, 3390
BccI CCATC 9 cut(s) 395, 563, 758, 1711, 1736, 2871, 3112, 3577, 3662
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 8 cut(s) 89, 807, 1349, 1416, 2117, 2382, 2605, 3298
BciVI GTATCC 1 cut(s) 3264
BclI TGATCA 1 cut(s) 2821
BcnI CCSGG 3 cut(s) 162, 167, 589
BcoDI GTCTC 4 cut(s) 537, 578, 887, 2153
BcuI ACTAGT 1 cut(s) 3323
BfmI CTRYAG 5 cut(s) 888, 984, 993, 1459, 2461
BfuAI ACCTGC 3 cut(s) 2835, 3337, 3408
BfuI GTATCC 1 cut(s) 3264
BmcAI AGTACT 1 cut(s) 1385
Bme18I GGWCC 6 cut(s) 91, 423, 684, 767, 2119, 2846
BmeT110I CYCGRG 1 cut(s) 549
BmiI GGNNCC 4 cut(s) 424, 803, 1303, 2847
BmrI ACTGGG 1 cut(s) 2080
BmsI GCATC 6 cut(s) 301, 358, 959, 2137, 2962, 3628
BmuI ACTGGG 1 cut(s) 2080
BoxI GACNNNNGTC 1 cut(s) 1428
BpiI GAAGAC 6 cut(s) 108, 492, 2016, 2325, 2579, 2882
BplI GAGNNNNNCTC 2 cut(s) 898, 930
BpmI CTGGAG 2 cut(s) 771, 1633
Bpu10I CCTNAGC 3 cut(s) 468, 564, 2018
BpuMI CCSGG 3 cut(s) 162, 167, 589
BsaAI YACGTR 2 cut(s) 1362, 3041
BsaBI GATNNNNATC 2 cut(s) 612, 3099
BsaHI GRCGYC 4 cut(s) 42, 190, 546, 1605
BsaI GGTCTC 1 cut(s) 578
BsaWI WCCGGW 4 cut(s) 678, 865, 1012, 2725
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse118I RCCGGY 3 cut(s) 678, 1012, 3116
Bse1I ACTGG 6 cut(s) 687, 788, 1367, 1650, 1691, 2075
Bse3DI GCAATG 2 cut(s) 1217, 3291
Bse8I GATNNNNATC 2 cut(s) 612, 3099
BseBI CCWGG 8 cut(s) 89, 807, 1349, 1416, 2117, 2382, 2605, 3298
BseGI GGATG 9 cut(s) 235, 373, 574, 1857, 2260, 2311, 2734, 3385, 3724
BseJI GATNNNNATC 2 cut(s) 612, 3099
BseMI GCAATG 2 cut(s) 1217, 3291
BseMII CTCAG 8 cut(s) 459, 555, 1073, 1163, 2225, 2809, 3249, 3489
BseNI ACTGG 6 cut(s) 687, 788, 1367, 1650, 1691, 2075
BseRI GAGGAG 9 cut(s) 64, 134, 137, 140, 353, 485, 919, 2510, 3653
BseSI GKGCMC 4 cut(s) 804, 2423, 2536, 3233
BseXI GCAGC 9 cut(s) 549, 634, 766, 998, 1766, 1913, 2703, 3199, 3390
BseYI CCCAGC 1 cut(s) 132
BsgI GTGCAG 5 cut(s) 1614, 1899, 2657, 3348, 3850
BshFI GGCC 9 cut(s) 165, 170, 406, 417, 1366, 2472, 2608, 3076, 3712
BshNI GGYRCC 1 cut(s) 801
BshTI ACCGGT 2 cut(s) 678, 1012
BsiHKAI GWGCWC 4 cut(s) 1207, 2536, 3233, 3476
BsiHKCI CYCGRG 1 cut(s) 549
BslFI GGGAC 6 cut(s) 436, 489, 491, 1161, 1270, 2087
BsmAI GTCTC 4 cut(s) 537, 578, 887, 2153
BsmBI CGTCTC 2 cut(s) 537, 2153
BsmFI GGGAC 6 cut(s) 436, 489, 491, 1161, 1270, 2087
BsmI GAATGC 4 cut(s) 289, 733, 1107, 2879
BsnI GGCC 9 cut(s) 165, 170, 406, 417, 1366, 2472, 2608, 3076, 3712
Bso31I GGTCTC 1 cut(s) 578
BsoBI CYCGRG 1 cut(s) 549
Bsp1286I GDGCHC 6 cut(s) 804, 1207, 2423, 2536, 3233, 3476
Bsp19I CCATGG 1 cut(s) 3006
BspANI GGCC 9 cut(s) 165, 170, 406, 417, 1366, 2472, 2608, 3076, 3712
BspCNI CTCAG 8 cut(s) 460, 556, 1072, 1164, 2226, 2808, 3250, 3488
BspHI TCATGA 2 cut(s) 2706, 2818
BspLI GGNNCC 4 cut(s) 424, 803, 1303, 2847
BspMAI CTGCAG 3 cut(s) 892, 988, 997
BspMI ACCTGC 3 cut(s) 2835, 3337, 3408
BspPI GGATC 4 cut(s) 203, 931, 1892, 2372
BspQI GCTCTTC 1 cut(s) 3514
BspT107I GGYRCC 1 cut(s) 801
BspTNI GGTCTC 1 cut(s) 578
BsrDI GCAATG 2 cut(s) 1217, 3291
BsrFI RCCGGY 3 cut(s) 678, 1012, 3116
BsrI ACTGG 6 cut(s) 687, 788, 1367, 1650, 1691, 2075
BssAI RCCGGY 3 cut(s) 678, 1012, 3116
BssNI GRCGYC 4 cut(s) 42, 190, 546, 1605
BssT1I CCWWGG 3 cut(s) 418, 1847, 3006
Bst2UI CCWGG 8 cut(s) 89, 807, 1349, 1416, 2117, 2382, 2605, 3298
Bst6I CTCTTC 4 cut(s) 519, 845, 985, 3514
BstACI GRCGYC 4 cut(s) 42, 190, 546, 1605
BstAPI GCANNNNNTGC 5 cut(s) 956, 992, 1637, 2929, 3471
BstBAI YACGTR 2 cut(s) 1362, 3041
BstDSI CCRYGG 2 cut(s) 2849, 3006
BstF5I GGATG 9 cut(s) 235, 373, 574, 1857, 2260, 2311, 2734, 3385, 3724
BstHHI GCGC 1 cut(s) 2566
BstMAI GTCTC 4 cut(s) 537, 578, 887, 2153
BstNI CCWGG 8 cut(s) 89, 807, 1349, 1416, 2117, 2382, 2605, 3298
BstNSI RCATGY 3 cut(s) 239, 2904, 2990
BstPAI GACNNNNGTC 1 cut(s) 1428
BstSFI CTRYAG 5 cut(s) 888, 984, 993, 1459, 2461
BstSLI GKGCMC 4 cut(s) 804, 2423, 2536, 3233
BstV1I GCAGC 9 cut(s) 549, 634, 766, 998, 1766, 1913, 2703, 3199, 3390
BstV2I GAAGAC 6 cut(s) 108, 492, 2016, 2325, 2579, 2882
BstX2I RGATCY 1 cut(s) 923
BstYI RGATCY 1 cut(s) 923
BsuI GTATCC 1 cut(s) 3264
BsuRI GGCC 9 cut(s) 165, 170, 406, 417, 1366, 2472, 2608, 3076, 3712
BtgI CCRYGG 2 cut(s) 2849, 3006
BtsCI GGATG 9 cut(s) 235, 373, 574, 1857, 2260, 2311, 2734, 3385, 3724
BtsI GCAGTG 5 cut(s) 1033, 1205, 1868, 3127, 3781
BtsIMutI CAGTG 9 cut(s) 487, 694, 795, 1033, 1205, 1868, 2068, 3127, 3781
BveI ACCTGC 3 cut(s) 2835, 3337, 3408
CaiI CAGNNNCTG 1 cut(s) 992
CciI TCATGA 2 cut(s) 2706, 2818
CfoI GCGC 1 cut(s) 2566
Cfr10I RCCGGY 3 cut(s) 678, 1012, 3116
CseI GACGC 4 cut(s) 31, 198, 554, 2170
Csp6I GTAC 6 cut(s) 195, 1010, 1115, 1158, 1384, 3906
CspAI ACCGGT 2 cut(s) 678, 1012
CviQI GTAC 6 cut(s) 195, 1010, 1115, 1158, 1384, 3906
DraI TTTAAA 2 cut(s) 496, 1921
EaeI YGGCCR 3 cut(s) 1364, 2470, 2606
Eam1104I CTCTTC 4 cut(s) 519, 845, 985, 3514
EarI CTCTTC 4 cut(s) 519, 845, 985, 3514
EciI GGCGGA 3 cut(s) 58, 118, 2896
Eco130I CCWWGG 3 cut(s) 418, 1847, 3006
Eco31I GGTCTC 1 cut(s) 578
Eco32I GATATC 1 cut(s) 879
Eco47I GGWCC 6 cut(s) 91, 423, 684, 767, 2119, 2846
Eco57I CTGAAG 4 cut(s) 795, 2010, 2337, 2409
Eco88I CYCGRG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 3262
EcoRII CCWGG 8 cut(s) 87, 805, 1347, 1414, 2115, 2380, 2603, 3296
EcoRV GATATC 1 cut(s) 879
EcoT14I CCWWGG 3 cut(s) 418, 1847, 3006
EcoT22I ATGCAT 1 cut(s) 2902
ErhI CCWWGG 3 cut(s) 418, 1847, 3006
Esp3I CGTCTC 2 cut(s) 537, 2153
FalI AAGNNNNNCTT 4 cut(s) 1609, 1641, 2769, 2801
FaqI GGGAC 6 cut(s) 436, 489, 491, 1161, 1270, 2087
FauI CCCGC 2 cut(s) 280, 3662
FbaI TGATCA 1 cut(s) 2821
FokI GGATG 9 cut(s) 242, 380, 581, 1864, 2267, 2298, 2741, 3392, 3731
FspI TGCGCA 1 cut(s) 2565
GlaI GCGC 1 cut(s) 2565
GsaI CCCAGC 1 cut(s) 136
GsuI CTGGAG 2 cut(s) 771, 1633
HaeIII GGCC 9 cut(s) 165, 170, 406, 417, 1366, 2472, 2608, 3076, 3712
HgaI GACGC 4 cut(s) 31, 198, 554, 2170
HhaI GCGC 1 cut(s) 2566
Hin1I GRCGYC 4 cut(s) 42, 190, 546, 1605
Hin6I GCGC 1 cut(s) 2564
HinP1I GCGC 1 cut(s) 2564
HincII GTYRAC 2 cut(s) 391, 3321
HindII GTYRAC 2 cut(s) 391, 3321
HindIII AAGCTT 1 cut(s) 3440
HphI GGTGA 5 cut(s) 347, 1027, 1817, 2156, 2816
Hpy166II GTNNAC 7 cut(s) 391, 1597, 2534, 2992, 3231, 3321, 3779
Hpy8I GTNNAC 7 cut(s) 391, 1597, 2534, 2992, 3231, 3321, 3779
Hpy99I CGWCG 4 cut(s) 14, 47, 50, 192
HpyCH4IV ACGT 4 cut(s) 1008, 1361, 1605, 3040
HpySE526I ACGT 4 cut(s) 1008, 1361, 1605, 3040
Hsp92I GRCGYC 4 cut(s) 42, 190, 546, 1605
HspAI GCGC 1 cut(s) 2564
KroI GCCGGC 1 cut(s) 3116
KroNI GCCGGC 1 cut(s) 3118
Ksp22I TGATCA 1 cut(s) 2821
LguI GCTCTTC 1 cut(s) 3514
LmnI GCTCC 6 cut(s) 265, 1652, 2096, 2937, 3200, 3355
Lsp1109I GCAGC 9 cut(s) 549, 634, 766, 998, 1766, 1913, 2703, 3199, 3390
LweI GCATC 6 cut(s) 301, 358, 959, 2137, 2962, 3628
MaeII ACGT 4 cut(s) 1008, 1361, 1605, 3040
MaeIII GTNAC 8 cut(s) 790, 997, 1083, 1430, 1451, 1866, 3001, 3028
MfeI CAATTG 4 cut(s) 119, 2123, 2759, 3824
MflI RGATCY 1 cut(s) 923
MhlI GDGCHC 6 cut(s) 804, 1207, 2423, 2536, 3233, 3476
MlsI TGGCCA 3 cut(s) 1366, 2472, 2608
MluNI TGGCCA 3 cut(s) 1366, 2472, 2608
MlyI GAGTC 8 cut(s) 119, 538, 657, 787, 1183, 1292, 1339, 2987
MmeI TCCRAC 6 cut(s) 28, 848, 1167, 1518, 2731, 3158
Mox20I TGGCCA 3 cut(s) 1366, 2472, 2608
Mph1103I ATGCAT 1 cut(s) 2902
MroNI GCCGGC 1 cut(s) 3116
MroXI GAANNNNTTC 2 cut(s) 1555, 2389
MscI TGGCCA 3 cut(s) 1366, 2472, 2608
MslI CAYNNNNRTG 5 cut(s) 1210, 1989, 2787, 2958, 3792
Msp20I TGGCCA 3 cut(s) 1366, 2472, 2608
MspA1I CMGCKG 3 cut(s) 375, 540, 2799
MunI CAATTG 4 cut(s) 119, 2123, 2759, 3824
Mva1269I GAATGC 4 cut(s) 289, 733, 1107, 2879
MvaI CCWGG 8 cut(s) 89, 807, 1349, 1416, 2117, 2382, 2605, 3298
NaeI GCCGGC 1 cut(s) 3118
NciI CCSGG 3 cut(s) 162, 167, 589
NcoI CCATGG 1 cut(s) 3006
NgoMIV GCCGGC 1 cut(s) 3116
NlaIV GGNNCC 4 cut(s) 424, 803, 1303, 2847
NmuCI GTSAC 6 cut(s) 790, 1083, 1430, 1451, 1866, 3028
NsbI TGCGCA 1 cut(s) 2565
NsiI ATGCAT 1 cut(s) 2902
NspI RCATGY 3 cut(s) 239, 2904, 2990
PaeI GCATGC 2 cut(s) 239, 2904
PagI TCATGA 2 cut(s) 2706, 2818
PaqCI CACCTGC 2 cut(s) 2835, 3408
PciI ACATGT 1 cut(s) 2986
PciSI GCTCTTC 1 cut(s) 3514
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 4 cut(s) 289, 733, 1107, 2879
PdiI GCCGGC 1 cut(s) 3118
PdmI GAANNNNTTC 2 cut(s) 1555, 2389
PflFI GACNNNGTC 1 cut(s) 3536
PfoI TCCNGGA 2 cut(s) 1347, 2380
PinAI ACCGGT 2 cut(s) 678, 1012
PleI GAGTC 8 cut(s) 119, 537, 657, 787, 1182, 1291, 1338, 2987
PpsI GAGTC 8 cut(s) 119, 537, 657, 787, 1182, 1291, 1338, 2987
Ppu21I YACGTR 2 cut(s) 1362, 3041
PpuMI RGGWCCY 1 cut(s) 91
PscI ACATGT 1 cut(s) 2986
PshAI GACNNNNGTC 1 cut(s) 1428
PshBI ATTAAT 2 cut(s) 612, 1545
PsiI TTATAA 2 cut(s) 2582, 3771
Psp5II RGGWCCY 1 cut(s) 91
Psp6I CCWGG 8 cut(s) 87, 805, 1347, 1414, 2115, 2380, 2603, 3296
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 8 cut(s) 87, 805, 1347, 1414, 2115, 2380, 2603, 3296
PspN4I GGNNCC 4 cut(s) 424, 803, 1303, 2847
PspPPI RGGWCCY 1 cut(s) 91
PsrI GAACNNNNNNTAC 2 cut(s) 2188, 2220
PstI CTGCAG 3 cut(s) 892, 988, 997
PstNI CAGNNNCTG 1 cut(s) 992
PsuI RGATCY 1 cut(s) 923
PsyI GACNNNGTC 1 cut(s) 3536
PvuII CAGCTG 1 cut(s) 2799
RsaI GTAC 6 cut(s) 196, 1011, 1116, 1159, 1385, 3907
RsaNI GTAC 6 cut(s) 195, 1010, 1115, 1158, 1384, 3906
RseI CAYNNNNRTG 5 cut(s) 1210, 1989, 2787, 2958, 3792
SapI GCTCTTC 1 cut(s) 3514
ScaI AGTACT 1 cut(s) 1385
SchI GAGTC 8 cut(s) 119, 538, 657, 787, 1183, 1292, 1339, 2987
SduI GDGCHC 6 cut(s) 804, 1207, 2423, 2536, 3233, 3476
SfaNI GCATC 6 cut(s) 301, 358, 959, 2137, 2962, 3628
SfcI CTRYAG 5 cut(s) 888, 984, 993, 1459, 2461
SinI GGWCC 6 cut(s) 91, 423, 684, 767, 2119, 2846
SmiMI CAYNNNNRTG 5 cut(s) 1210, 1989, 2787, 2958, 3792
SpeI ACTAGT 1 cut(s) 3323
SphI GCATGC 2 cut(s) 239, 2904
SspI AATATT 4 cut(s) 1164, 2614, 3249, 3897
StyI CCWWGG 3 cut(s) 418, 1847, 3006
TaiI ACGT 4 cut(s) 1011, 1364, 1608, 3043
TaqI TCGA 7 cut(s) 399, 447, 532, 705, 1068, 1559, 2346
TaqII GACCGA 1 cut(s) 1418
TatI WGTACW 2 cut(s) 1157, 1383
TauI GCSGC 2 cut(s) 1932, 3712
TscAI CASTG 9 cut(s) 487, 694, 795, 1033, 1212, 1875, 2075, 3127, 3788
TseFI GTSAC 6 cut(s) 790, 1083, 1430, 1451, 1866, 3028
TseI GCWGC 9 cut(s) 537, 647, 779, 986, 1754, 1926, 2716, 3212, 3403
Tsp45I GTSAC 6 cut(s) 790, 1083, 1430, 1451, 1866, 3028
TspGWI ACGGA 3 cut(s) 120, 934, 2838
TspRI CASTG 9 cut(s) 487, 694, 795, 1033, 1212, 1875, 2075, 3127, 3788
Tth111I GACNNNGTC 1 cut(s) 3536
VneI GTGCAC 2 cut(s) 2532, 3229
VpaK11BI GGWCC 6 cut(s) 91, 423, 684, 767, 2119, 2846
VspI ATTAAT 2 cut(s) 612, 1545
XceI RCATGY 3 cut(s) 239, 2904, 2990
XmnI GAANNNNTTC 2 cut(s) 1555, 2389
ZraI GACGTC 1 cut(s) 1606
ZrmI AGTACT 1 cut(s) 1385
Zsp2I ATGCAT 1 cut(s) 2902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.