Rorug05G0266200

DDT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003576
Physical Location & Seq
Forward (+)
30037646 .. 30039076
1431 bp
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UTR
Exon/CDS
Intron
Rorug05G0266200.1

Sequence Viewer

Length: 621 bp
ATGGCCAACTCTAATATTCTAAGAGCATATAACAAAAGCATTGCATTTCCTATATTGGGTCTTCTTTGTCTATCGCTGTTACTGCAGAAGAGTGGTGCAAATGAGTTTACACTAGCTTGGACTGTTCCTGATGCATCAACTCATTTTAGTCAATGGGCAGAGACCAACAGATTTCAAATTGGTGACTCCTTAGTGTTCAGCTATTCTCCTGGCCAAGACTCAGTGCTTCGCGTCAGCCAGGATGACTACACAAATTGCAATACTGATGCTCCAACAGCTGAGAAATATACCGATGGCCACTCGACCTACACGTTCAACCAGTCTGGGCCATTCTACTTCATGAGTGGGAACAAAGATAACTGTCTCAAAAATGAGAAGATTGTTGTGATTGTCTTGGCAGACAGGAACCAAACAAGCAATGCAACTACTCCATCTCCTGCACCTTCTGGCGAAGCCTCTCCACCTCCCCCTTCACCAGGGACGCTCCAGATCAACCCCACTCCAGCTCCCGAAAGTGATCAAATCCCTCCTCCTCCTAGCGGTGCTTCTTCAATTTTCATCAGTTTAATTGGATCCATTGGAGCAGTTGCTGCTGCCTATTCATCATTTTTATTATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031010 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

206

Amino Acids

21.99

Weight (kDa)

4.69

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 40 - 123 2.3e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 231
AciI CCGC 1 cut(s) 540
AclWI GGATC 2 cut(s) 567, 580
AcoI YGGCCR 3 cut(s) 3, 211, 295
AfiI CCNNNNNNNGG 3 cut(s) 56, 476, 539
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 3 cut(s) 176, 316, 552
AjnI CCWGG 3 cut(s) 208, 237, 475
AluBI AGCT 4 cut(s) 116, 201, 278, 506
AluI AGCT 4 cut(s) 116, 201, 278, 506
Alw26I GTCTC 2 cut(s) 155, 368
AlwI GGATC 2 cut(s) 567, 580
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 4 cut(s) 3, 211, 295, 326
ApeKI GCWGC 2 cut(s) 590, 593
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 194, 465
BalI TGGCCA 3 cut(s) 5, 213, 297
BamHI GGATCC 1 cut(s) 572
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 577, 580
BccI CCATC 2 cut(s) 287, 439
BciT130I CCWGG 3 cut(s) 210, 239, 477
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 155, 368
BfaI CTAG 2 cut(s) 113, 537
BfmI CTRYAG 1 cut(s) 83
BisI GCNGC 2 cut(s) 591, 594
BlsI GCNGC 2 cut(s) 592, 595
Bme1390I CCNGG 3 cut(s) 210, 239, 477
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 2 cut(s) 407, 574
BmrFI CCNGG 3 cut(s) 210, 239, 477
BmsI GCATC 3 cut(s) 121, 143, 256
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 2 cut(s) 470, 486
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 476
BsaXI ACNNNNNCTCC 6 cut(s) 253, 283, 418, 448, 490, 520
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 476, 539
Bse1I ACTGG 1 cut(s) 319
Bse3DI GCAATG 2 cut(s) 39, 424
BseBI CCWGG 3 cut(s) 210, 239, 477
BseDI CCNNGG 1 cut(s) 476
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 3 cut(s) 56, 476, 539
BseMI GCAATG 2 cut(s) 39, 424
BseMII CTCAG 2 cut(s) 234, 270
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 2 cut(s) 519, 522
BseXI GCAGC 2 cut(s) 577, 580
BsgI GTGCAG 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 4 cut(s) 5, 213, 297, 328
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 3 cut(s) 56, 476, 539
BsmAI GTCTC 2 cut(s) 155, 368
BsmFI GGGAC 1 cut(s) 493
BsnI GGCC 4 cut(s) 5, 213, 297, 328
Bso31I GGTCTC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 489, 517, 572
BspACI CCGC 1 cut(s) 540
BspANI GGCC 4 cut(s) 5, 213, 297, 328
BspCNI CTCAG 2 cut(s) 233, 271
BspFNI CGCG 1 cut(s) 231
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 407, 574
BspMAI CTGCAG 1 cut(s) 87
BspPI GGATC 2 cut(s) 567, 580
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 39, 424
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 476
BssMI GATC 3 cut(s) 489, 517, 572
Bst2UI CCWGG 3 cut(s) 210, 239, 477
Bst4CI ACNGT 2 cut(s) 124, 362
Bst6I CTCTTC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 590
BstDEI CTNAG 4 cut(s) 20, 190, 220, 279
BstENI CCTNNNNNAGG 1 cut(s) 474
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 3 cut(s) 492, 520, 575
BstMAI GTCTC 2 cut(s) 155, 368
BstMBI GATC 3 cut(s) 489, 517, 572
BstMWI GCNNNNNNNGC 3 cut(s) 82, 275, 590
BstNI CCWGG 3 cut(s) 210, 239, 477
BstSCI CCNGG 3 cut(s) 208, 237, 475
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 577, 580
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
BsuRI GGCC 4 cut(s) 5, 213, 297, 328
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 326
CseI GACGC 2 cut(s) 220, 490
CviAII CATG 1 cut(s) 340
DdeI CTNAG 4 cut(s) 20, 190, 220, 279
DpnI GATC 3 cut(s) 491, 519, 574
DpnII GATC 3 cut(s) 489, 517, 572
EaeI YGGCCR 3 cut(s) 3, 211, 295
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 155
EcoNI CCTNNNNNAGG 1 cut(s) 474
EcoRII CCWGG 3 cut(s) 208, 237, 475
EcoT22I ATGCAT 1 cut(s) 136
FaeI CATG 1 cut(s) 343
FaiI YATR 5 cut(s) 28, 30, 53, 288, 341
FaqI GGGAC 1 cut(s) 493
FatI CATG 1 cut(s) 339
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 2 cut(s) 591, 594
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 591, 594
FspBI CTAG 2 cut(s) 113, 537
GluI GCNGC 2 cut(s) 591, 594
GsuI CTGGAG 2 cut(s) 470, 486
HaeIII GGCC 4 cut(s) 5, 213, 297, 328
HgaI GACGC 2 cut(s) 220, 490
Hin1II CATG 1 cut(s) 343
HinfI GANTC 2 cut(s) 185, 218
HphI GGTGA 2 cut(s) 194, 465
Hpy166II GTNNAC 1 cut(s) 108
Hpy188III TCNNGA 4 cut(s) 128, 340, 487, 509
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 2 cut(s) 453, 480
HpyCH4III ACNGT 2 cut(s) 124, 362
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 7 cut(s) 44, 85, 98, 134, 258, 422, 440
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 275, 590
HpyF3I CTNAG 4 cut(s) 20, 190, 220, 279
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 3 cut(s) 489, 517, 572
LmnI GCTCC 4 cut(s) 274, 489, 511, 581
Lsp1109I GCAGC 2 cut(s) 577, 580
LweI GCATC 3 cut(s) 121, 143, 256
MaeI CTAG 2 cut(s) 113, 537
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 78, 182
MalI GATC 3 cut(s) 491, 519, 574
MboI GATC 3 cut(s) 489, 517, 572
MboII GAAGA 4 cut(s) 53, 100, 388, 540
MflI RGATCY 1 cut(s) 572
MlsI TGGCCA 3 cut(s) 5, 213, 297
MluCI AATT 4 cut(s) 177, 253, 552, 567
MluNI TGGCCA 3 cut(s) 5, 213, 297
MlyI GAGTC 2 cut(s) 179, 212
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 5 cut(s) 466, 474, 537, 540, 543
Mox20I TGGCCA 3 cut(s) 5, 213, 297
Mph1103I ATGCAT 1 cut(s) 136
MscI TGGCCA 3 cut(s) 5, 213, 297
MseI TTAA 1 cut(s) 566
Msp20I TGGCCA 3 cut(s) 5, 213, 297
MspA1I CMGCKG 1 cut(s) 278
MspR9I CCNGG 3 cut(s) 210, 239, 477
MvaI CCWGG 3 cut(s) 210, 239, 477
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 82, 275, 590
NdeII GATC 3 cut(s) 489, 517, 572
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 2 cut(s) 407, 574
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 136
PagI TCATGA 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PkrI GCNGC 2 cut(s) 592, 595
PleI GAGTC 2 cut(s) 179, 212
PpsI GAGTC 2 cut(s) 179, 212
Psp6I CCWGG 3 cut(s) 208, 237, 475
PspGI CCWGG 3 cut(s) 208, 237, 475
PspN4I GGNNCC 2 cut(s) 407, 574
PspPI GGNCC 1 cut(s) 326
PstI CTGCAG 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 566
SatI GCNGC 2 cut(s) 591, 594
Sau3AI GATC 3 cut(s) 489, 517, 572
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 2 cut(s) 179, 212
ScrFI CCNGG 3 cut(s) 210, 239, 477
SetI ASST 8 cut(s) 118, 203, 280, 308, 314, 445, 466, 508
SfaNI GCATC 3 cut(s) 121, 143, 256
SfcI CTRYAG 1 cut(s) 83
Sse9I AATT 4 cut(s) 177, 253, 552, 567
SsiI CCGC 1 cut(s) 540
SspI AATATT 1 cut(s) 16
SspMI CTAG 2 cut(s) 113, 537
StyD4I CCNGG 3 cut(s) 208, 237, 475
TaaI ACNGT 2 cut(s) 124, 362
TaiI ACGT 1 cut(s) 314
TaqI TCGA 1 cut(s) 302
TasI AATT 4 cut(s) 177, 253, 552, 567
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 2 cut(s) 590, 593
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 3 cut(s) 328, 547, 591
TspRI CASTG 1 cut(s) 228
XagI CCTNNNNNAGG 1 cut(s) 474
XspI CTAG 2 cut(s) 113, 537
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.