Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000748

Physical Location & Seq

Genomic Coordinates Forward (+)

31172277 .. 31174553

Gene Structure 2277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1213100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGACATGGAGGTGGTGGGCCGCCACGCGCTTCTCTTCGACGACGACAACAACGCCTCGTTCGTCAATTCACCCGACGCCCTCGTCGAGTGGAACTCGCTCTTCATCGACCGCTACGATGTTCGCCACCTCCTCCCCAACCCTATGCCCCCTCGCACGCGCCGGCGACATCTCACGCGCTCATCCTCTTCGCCGCCGCCTTACCACGATGCCGCGCTCGAGTCGGAGCTCGATCAGGAGCGCTACCTCGATTTGCCGTCGCCGTCCGAAGAACAGGAACAAGAACAAGGTAAAGAACCAGAGCAGGCAGAGGCTGGTAGCTATCATTCTGTTGGATTCTCATATGGAAACCTAGATGAATTCACTTTGCAGAAGAATAATGATCCCGAGCCTGTTTTCCACCCAGCCTTTCCAGTGCCAGATATCTTAAGTCAAAACCTTATACTCGGAGAAGGCATGCAGTTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000380 GO:0000395 GO:0000398 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRY_EERY Surp

Protein Analysis

157

Amino Acids

17.79

Weight (kDa)

4.46

Isoelectric Point (pI)

74.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DRY_EERY	PF09750	2 - 117	6.2e-25	Alternative splicing regulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100
fragaria_vesca	FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160
malus_domestica	MD11G1213100.v1.1 MD11G1213200.v1.1
prunus_persica	Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1
pyrus_communis	pycom11g18800
rosa_chinensis	RchiOBHm_Chr5g0040811
rosa_laevigata	RLG00000034004
rosa_multiflora	Rmu_co8000140.1_g000001 Rmu_sc0001579.1_g000004 Rmu_sc0013576.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432480 Rroxscaffold_1G00039890 Rroxscaffold_7G00202520 Rroxscaffold_7G00210240
rosa_rugosa	Rorug03G0107700 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187700 Rorug05G0187800 Rorug06G0332600 Rorug07G0294400
rosa_samantha	Rh2DG550900 Rh3CG305900 Rh5AG273200 Rh5BG278300 Rh5BG278400 Rh5CG310400 Rh5DG286300
rosa_wichuraiana	Rw5G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccII	CGCG	4 cut(s)	29, 160, 178, 215
AciI	CCGC	5 cut(s)	22, 112, 194, 197, 213
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	78
AfeI	AGCGCT	1 cut(s)	242
AflII	CTTAAG	1 cut(s)	427
AluBI	AGCT	2 cut(s)	229, 321
AluI	AGCT	2 cut(s)	229, 321
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	314
Ama87I	CYCGRG	2 cut(s)	218, 386
Aor51HI	AGCGCT	1 cut(s)	242
AoxI	GGCC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	359
AspLEI	GCGC	5 cut(s)	31, 162, 180, 217, 243
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	63
AvaI	CYCGRG	2 cut(s)	218, 386
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BceAI	ACGGC	2 cut(s)	241, 247
BfaI	CTAG	1 cut(s)	353
BfoI	RGCGCY	1 cut(s)	244
BfrI	CTTAAG	1 cut(s)	427
BisI	GCNGC	4 cut(s)	22, 194, 197, 213
BlsI	GCNGC	4 cut(s)	23, 195, 198, 214
BmeT110I	CYCGRG	2 cut(s)	218, 386
BmgT120I	GGNCC	1 cut(s)	19
BmsI	GCATC	1 cut(s)	199
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BsaHI	GRCGYC	1 cut(s)	78
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	413
BseGI	GGATG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	122
BseYI	CCCAGC	1 cut(s)	403
Bsh1236I	CGCG	4 cut(s)	29, 160, 178, 215
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	2 cut(s)	218, 386
BsiSI	CCGG	1 cut(s)	163
BsnI	GGCC	1 cut(s)	21
BsoBI	CYCGRG	2 cut(s)	218, 386
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	232, 382
BspACI	CCGC	5 cut(s)	22, 112, 194, 197, 213
BspANI	GGCC	1 cut(s)	21
BspFNI	CGCG	4 cut(s)	29, 160, 178, 215
BspPI	GGATC	1 cut(s)	377
BspQI	GCTCTTC	1 cut(s)	107
BspTI	CTTAAG	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	413
BssAI	RCCGGY	1 cut(s)	162
BssMI	GATC	2 cut(s)	232, 382
BssNI	GRCGYC	1 cut(s)	78
Bst6I	CTCTTC	3 cut(s)	41, 107, 193
BstACI	GRCGYC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	427
BstC8I	GCNNGC	4 cut(s)	158, 164, 306, 458
BstF5I	GGATG	1 cut(s)	182
BstFNI	CGCG	4 cut(s)	29, 160, 178, 215
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	5 cut(s)	31, 162, 180, 217, 243
BstKTI	GATC	2 cut(s)	235, 385
BstMBI	GATC	2 cut(s)	232, 382
BstMCI	CGRYCG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	460
BstUI	CGCG	4 cut(s)	29, 160, 178, 215
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	4 cut(s)	158, 164, 306, 458
CaiI	CAGNNNCTG	1 cut(s)	314
CfoI	GCGC	5 cut(s)	31, 162, 180, 217, 243
Cfr10I	RCCGGY	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	19
CseI	GACGC	1 cut(s)	86
CviAII	CATG	2 cut(s)	7, 457
CviJI	RGCY	6 cut(s)	21, 229, 314, 321, 391, 407
CviKI_1	RGCY	6 cut(s)	21, 229, 314, 321, 391, 407
DpnI	GATC	2 cut(s)	234, 384
DpnII	GATC	2 cut(s)	232, 382
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	3 cut(s)	41, 107, 193
EarI	CTCTTC	3 cut(s)	41, 107, 193
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	424
Eco47III	AGCGCT	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	229
Eco88I	CYCGRG	2 cut(s)	218, 386
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	359
EcoRV	GATATC	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	2 cut(s)	10, 460
FaiI	YATR	6 cut(s)	8, 146, 343, 345, 443, 458
FatI	CATG	2 cut(s)	6, 456
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	4 cut(s)	22, 194, 197, 213
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	22, 194, 197, 213
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	5 cut(s)	30, 161, 179, 216, 242
GluI	GCNGC	4 cut(s)	22, 194, 197, 213
GsaI	CCCAGC	1 cut(s)	407
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	163
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	5 cut(s)	31, 162, 180, 217, 243
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	10, 460
Hin6I	GCGC	5 cut(s)	29, 160, 178, 215, 241
HinP1I	GCGC	5 cut(s)	29, 160, 178, 215, 241
HinfI	GANTC	2 cut(s)	221, 336
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	1 cut(s)	63
Hpy188I	TCNGA	3 cut(s)	226, 268, 449
Hpy188III	TCNNGA	2 cut(s)	236, 386
Hpy99I	CGWCG	5 cut(s)	44, 47, 80, 89, 262
HpyAV	CCTTC	1 cut(s)	446
HpyCH4V	TGCA	2 cut(s)	370, 460
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	10, 460
HspAI	GCGC	5 cut(s)	29, 160, 178, 215, 241
KroI	GCCGGC	1 cut(s)	162
KroNI	GCCGGC	1 cut(s)	164
Kzo9I	GATC	2 cut(s)	232, 382
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	226, 238
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	353
MalI	GATC	2 cut(s)	234, 384
MboI	GATC	2 cut(s)	232, 382
MboII	GAAGA	5 cut(s)	28, 94, 180, 281, 385
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	67, 359
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	204, 313
MnlI	CCTC	9 cut(s)	4, 67, 92, 140, 143, 162, 196, 257, 304
MreI	CGCCGGCG	1 cut(s)	162
MroNI	GCCGGC	1 cut(s)	162
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	1 cut(s)	11
MspCI	CTTAAG	1 cut(s)	427
MspI	CCGG	1 cut(s)	163
MvnI	CGCG	4 cut(s)	29, 160, 178, 215
NaeI	GCCGGC	1 cut(s)	164
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	2 cut(s)	232, 382
NgoMIV	GCCGGC	1 cut(s)	162
NlaIII	CATG	2 cut(s)	10, 460
NspI	RCATGY	1 cut(s)	460
PaeI	GCATGC	1 cut(s)	460
PaeR7I	CTCGAG	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	3 cut(s)	60, 84, 114
PdiI	GCCGGC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	336
PkrI	GCNGC	4 cut(s)	23, 195, 198, 214
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp124BI	GAGCTC	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	19
PspXI	VCTCGAGB	1 cut(s)	218
PstNI	CAGNNNCTG	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	4 cut(s)	22, 194, 197, 213
Sau3AI	GATC	2 cut(s)	232, 382
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	8 cut(s)	15, 132, 231, 249, 292, 323, 354, 441
SfaNI	GCATC	1 cut(s)	199
Sfr274I	CTCGAG	1 cut(s)	218
SgrAI	CRCCGGYG	1 cut(s)	162
SlaI	CTCGAG	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	218, 427
SmoI	CTYRAG	2 cut(s)	218, 427
SphI	GCATGC	1 cut(s)	460
Sse9I	AATT	2 cut(s)	67, 359
SsiI	CCGC	5 cut(s)	22, 112, 194, 197, 213
SspMI	CTAG	1 cut(s)	353
SstI	GAGCTC	1 cut(s)	231
TaqI	TCGA	6 cut(s)	39, 87, 108, 219, 231, 249
TasI	AATT	2 cut(s)	67, 359
TauI	GCSGC	4 cut(s)	24, 196, 199, 215
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	1 cut(s)	420
TspDTI	ATGAA	2 cut(s)	94, 372
TspRI	CASTG	1 cut(s)	420
Vha464I	CTTAAG	1 cut(s)	427
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	1 cut(s)	460
XhoI	CTCGAG	1 cut(s)	218
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.