Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000175

Orthogroup ID

OG0000748

Physical Location & Seq

Genomic Coordinates Forward (+)

1230319 .. 1235524

Gene Structure 5206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_175G00432480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTTTGGGTTCTTGATGCCTGACCATCACCAAGAACTAGTGAAGCAGGATACTCACGGAGTTTCTGCACAGGAAGAGAAGAAAAACAGTGGTGGTCTTGATCAGACAGGTGGAGCATTGTCTTTGCTTGGTTCTGTATATGGGTCTGGAGAGGATGAGGATGACATGGCTGAGGATGCATCTGACTTGCAAAAACTGAACTCTCAAGAAGCTGTTGATGCAATTATTGCAACTGTGCATGGGTCAGAGCAGAAAGAATCTACTGGAAATGTAACCGGGAAAAATGATACTGTTTCCAAGTTTCCATATCCTCCTTTGAAGGAAAAAGTTAATCTCATTAAACATAATCGTATCACTAGCACAGTTAAAGGTGGAGCCACAAGTGGGATGAAGAAAGAAAGTGATGCCTCGGGATCACTTTCCACTGCTGCCAATAAGTCACAGGCTCCTGCTCTGCCTAGTGCATCGAAGGTTGAACTACCCATTTTGGAGCCACCATCTGATCAAAGGAGAGTTGTGGAGAAAATTGTTGAGTTCATATTAAAGAACTGCAGAGAGTTTGAAGCTATTCTGGCTGAACAAAACTGTAAACAGGGAAGATTTTTGTTCCTTCTGCCATCTAATCAATATCATCCTTACTACTTGAAAGTTCTCCAAGATGCTCAAGAGCTCCATTGGAAGTTGATGTTTCAAATAAGGTGGAAGAATTTGACAAGAAATTTTCTGTTGATGAGTGTAATGAGCGATGATCAAAGAAGGCCTATCGTACTCTATCTAAAAGGGTTGAAGAAGAAGAAGATGGTGAAGGTGACGGTGAGTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000380 GO:0000395 GO:0000398 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRY_EERY Surp

Protein Analysis

274

Amino Acids

30.53

Weight (kDa)

8.65

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	170 - 219	1.8e-08	Surp module

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100
fragaria_vesca	FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160
malus_domestica	MD11G1213100.v1.1 MD11G1213200.v1.1
prunus_persica	Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1
pyrus_communis	pycom11g18800
rosa_chinensis	RchiOBHm_Chr5g0040811
rosa_laevigata	RLG00000034004
rosa_multiflora	Rmu_co8000140.1_g000001 Rmu_sc0001579.1_g000004 Rmu_sc0013576.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432480 Rroxscaffold_1G00039890 Rroxscaffold_7G00202520 Rroxscaffold_7G00210240
rosa_rugosa	Rorug03G0107700 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187700 Rorug05G0187800 Rorug06G0332600 Rorug07G0294400
rosa_samantha	Rh2DG550900 Rh3CG305900 Rh5AG273200 Rh5BG278300 Rh5BG278400 Rh5CG310400 Rh5DG286300
rosa_wichuraiana	Rw5G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	706, 718
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	1 cut(s)	384
AgsI	TTSAA	6 cut(s)	319, 476, 563, 646, 692, 787
AhdI	GACNNNNNGTC	1 cut(s)	816
AhlI	ACTAGT	1 cut(s)	37
AluBI	AGCT	3 cut(s)	212, 566, 670
AluI	AGCT	3 cut(s)	212, 566, 670
Alw21I	GWGCWC	1 cut(s)	672
AlwI	GGATC	1 cut(s)	421
Ama87I	CYCGRG	1 cut(s)	409
AoxI	GGCC	1 cut(s)	758
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	2 cut(s)	706, 718
Asp700I	GAANNNNTTC	1 cut(s)	567
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	3 cut(s)	20, 814, 820
AvaI	CYCGRG	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	672
Bbv12I	GWGCWC	1 cut(s)	672
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	4 cut(s)	33, 505, 625, 793
BciVI	GTATCC	1 cut(s)	43
BclI	TGATCA	3 cut(s)	100, 502, 748
BcnI	CCSGG	1 cut(s)	277
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	3 cut(s)	38, 357, 459
BfmI	CTRYAG	1 cut(s)	550
BfuI	GTATCC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	277
BmeRI	GACNNNNNGTC	1 cut(s)	816
BmeT110I	CYCGRG	1 cut(s)	409
BmiI	GGNNCC	3 cut(s)	376, 447, 492
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	7 cut(s)	6, 166, 188, 208, 394, 473, 649
BpmI	CTGGAG	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	189, 648
BpuMI	CCSGG	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	5 cut(s)	160, 166, 181, 393, 631
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	760
BsiHKAI	GWGCWC	1 cut(s)	672
BsiHKCI	CYCGRG	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	384
BsnI	GGCC	1 cut(s)	760
BsoBI	CYCGRG	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	672
Bsp143I	GATC	4 cut(s)	100, 413, 502, 748
BspANI	GGCC	1 cut(s)	760
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	3 cut(s)	376, 447, 492
BspMAI	CTGCAG	1 cut(s)	554
BspPI	GGATC	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	4 cut(s)	100, 413, 502, 748
Bst4CI	ACNGT	6 cut(s)	89, 235, 292, 364, 587, 814
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	5 cut(s)	160, 166, 181, 393, 631
BstKTI	GATC	4 cut(s)	103, 416, 505, 751
BstMBI	GATC	4 cut(s)	100, 413, 502, 748
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 218, 227, 572
BstSCI	CCNGG	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	550
BstV1I	GCAGC	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	760
BtgZI	GCGATG	1 cut(s)	759
BtsCI	GGATG	5 cut(s)	160, 166, 181, 393, 631
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	2 cut(s)	94, 423
Csp6I	GTAC	1 cut(s)	767
CspCI	CAANNNNNGTGG	2 cut(s)	680, 715
CviAII	CATG	2 cut(s)	166, 239
CviJI	RGCY	9 cut(s)	170, 212, 377, 446, 493, 566, 575, 670, 760
CviKI_1	RGCY	9 cut(s)	170, 212, 377, 446, 493, 566, 575, 670, 760
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	4 cut(s)	102, 415, 504, 750
DpnII	GATC	4 cut(s)	100, 413, 502, 748
DriI	GACNNNNNGTC	1 cut(s)	816
Eam1104I	CTCTTC	1 cut(s)	69
Eam1105I	GACNNNNNGTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	670
Eco147I	AGGCCT	1 cut(s)	760
Eco24I	GRGCYC	1 cut(s)	672
Eco53kI	GAGCTC	1 cut(s)	670
Eco88I	CYCGRG	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	670
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	672
FaeI	CATG	2 cut(s)	169, 242
FaiI	YATR	7 cut(s)	139, 141, 167, 240, 307, 345, 539
FatI	CATG	2 cut(s)	165, 238
FbaI	TGATCA	3 cut(s)	100, 502, 748
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	5 cut(s)	167, 173, 188, 400, 618
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	3 cut(s)	38, 357, 459
GluI	GCNGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	760
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	2 cut(s)	169, 242
HinfI	GANTC	2 cut(s)	257, 817
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	3 cut(s)	20, 814, 820
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	4 cut(s)	105, 184, 247, 502
Hpy188III	TCNNGA	6 cut(s)	13, 98, 147, 206, 411, 665
Hpy8I	GTNNAC	1 cut(s)	590
HpyAV	CCTTC	5 cut(s)	313, 463, 620, 750, 799
HpyCH4III	ACNGT	6 cut(s)	89, 235, 292, 364, 587, 814
HpyCH4V	TGCA	8 cut(s)	68, 179, 190, 221, 230, 238, 464, 552
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 218, 227, 572
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	169, 242
Ksp22I	TGATCA	3 cut(s)	100, 502, 748
Kzo9I	GATC	4 cut(s)	100, 413, 502, 748
LmnI	GCTCC	5 cut(s)	113, 374, 451, 490, 675
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	7 cut(s)	6, 166, 188, 208, 394, 473, 649
MaeI	CTAG	3 cut(s)	38, 357, 459
MaeIII	GTNAC	3 cut(s)	271, 438, 808
MalI	GATC	4 cut(s)	102, 415, 504, 750
MboI	GATC	4 cut(s)	100, 413, 502, 748
MboII	GAAGA	9 cut(s)	86, 91, 403, 609, 715, 799, 802, 805, 808
MhlI	GDGCHC	1 cut(s)	672
MluCI	AATT	4 cut(s)	222, 525, 706, 718
MnlI	CCTC	5 cut(s)	145, 151, 166, 321, 418
Mph1103I	ATGCAT	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	4 cut(s)	330, 339, 366, 542
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	4 cut(s)	176, 218, 227, 572
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	4 cut(s)	100, 413, 502, 748
NlaIII	CATG	2 cut(s)	169, 242
NlaIV	GGNNCC	3 cut(s)	376, 447, 492
NmuCI	GTSAC	2 cut(s)	438, 808
NsiI	ATGCAT	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	430
Psp124BI	GAGCTC	1 cut(s)	672
PspN4I	GGNNCC	3 cut(s)	376, 447, 492
PstI	CTGCAG	1 cut(s)	554
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
SacI	GAGCTC	1 cut(s)	672
SaqAI	TTAA	4 cut(s)	330, 339, 366, 542
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	4 cut(s)	100, 413, 502, 748
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	672
SetI	ASST	8 cut(s)	112, 214, 373, 474, 568, 672, 701, 810
SfaNI	GCATC	7 cut(s)	6, 166, 188, 208, 394, 473, 649
SfcI	CTRYAG	1 cut(s)	550
SmlI	CTYRAG	2 cut(s)	204, 663
SmoI	CTYRAG	2 cut(s)	204, 663
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	4 cut(s)	222, 525, 706, 718
SseBI	AGGCCT	1 cut(s)	760
SspMI	CTAG	3 cut(s)	38, 357, 459
SstI	GAGCTC	1 cut(s)	672
StuI	AGGCCT	1 cut(s)	760
StyD4I	CCNGG	1 cut(s)	275
TaaI	ACNGT	6 cut(s)	89, 235, 292, 364, 587, 814
TaqI	TCGA	1 cut(s)	467
TasI	AATT	4 cut(s)	222, 525, 706, 718
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	4 cut(s)	330, 339, 366, 542
Tru9I	TTAA	4 cut(s)	330, 339, 366, 542
TscAI	CASTG	2 cut(s)	94, 430
TseFI	GTSAC	2 cut(s)	438, 808
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	2 cut(s)	438, 808
TspDTI	ATGAA	2 cut(s)	404, 526
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	2 cut(s)	94, 430
XapI	RAATTY	2 cut(s)	706, 718
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	3 cut(s)	38, 357, 459
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.