Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8000140.1

Orthogroup ID

OG0000748

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 526

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8000140.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 526 bp

gcagctattcttcaggctgccacaagaggcattaagaatccgggtttagacatattcccaaaaccgtcttctagtggtgctggtcaaggttctagcaatgatggtggtcgagatttgagctcaggaagtcaaaaggcatattgttctagtggtgttggtcaaggttctaacattcctgttcctgttgccaaggccattgcagagacggctgctcttgcagctgcaagtgaggccgactcctctgaagcatctttgactaaagagcagaagctaaaggctgaaagattgaaacgagcgaagatgtttgctgccatgataaaaggtggatctgcaccattgaaaactgagtcattacgtggcgtatctgctgagccaccagaatctggactttcatcatcaggtaatgaaattttaaatcttgcaaccagagaaagagaagggagttcagctccattggaagttgatgtttcaaataaggtggaagaatttgacaagaaattttctgttgatgagtgtaatgagcgac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000380 GO:0000395 GO:0000398 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRY_EERY Surp

Protein Analysis

175

Amino Acids

17.97

Weight (kDa)

5.7

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100
fragaria_vesca	FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160
malus_domestica	MD11G1213100.v1.1 MD11G1213200.v1.1
prunus_persica	Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1
pyrus_communis	pycom11g18800
rosa_chinensis	RchiOBHm_Chr5g0040811
rosa_laevigata	RLG00000034004
rosa_multiflora	Rmu_co8000140.1_g000001 Rmu_sc0001579.1_g000004 Rmu_sc0013576.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432480 Rroxscaffold_1G00039890 Rroxscaffold_7G00202520 Rroxscaffold_7G00210240
rosa_rugosa	Rorug03G0107700 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187700 Rorug05G0187800 Rorug06G0332600 Rorug07G0294400
rosa_samantha	Rh2DG550900 Rh3CG305900 Rh5AG273200 Rh5BG278300 Rh5BG278400 Rh5CG310400 Rh5DG286300
rosa_wichuraiana	Rw5G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	383
AclWI	GGATC	1 cut(s)	334
AcsI	RAATTY	3 cut(s)	408, 485, 497
AcuI	CTGAAG	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	289, 340, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	5 cut(s)	5, 120, 221, 271, 449
AluI	AGCT	5 cut(s)	5, 120, 221, 271, 449
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	334
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	2 cut(s)	192, 231
ApeKI	GCWGC	6 cut(s)	2, 17, 209, 218, 221, 308
ApoI	RAATTY	3 cut(s)	408, 485, 497
AsuC2I	CCSGG	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	6 cut(s)	4, 14, 196, 208, 230, 295
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	222
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	3 cut(s)	72, 93, 147
BisI	GCNGC	6 cut(s)	3, 18, 210, 219, 222, 309
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	6 cut(s)	4, 19, 211, 220, 223, 310
Bme1390I	CCNGG	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	60
BplI	GAGNNNNNCTC	4 cut(s)	221, 253, 433, 465
Bpu10I	CCTNAGC	1 cut(s)	121
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse3DI	GCAATG	2 cut(s)	103, 195
BseDI	CCNNGG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	2 cut(s)	103, 195
BseMII	CTCAG	3 cut(s)	135, 336, 360
BseRI	GAGGAG	1 cut(s)	229
BseXI	GCAGC	6 cut(s)	4, 14, 196, 208, 230, 295
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	194, 233
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	194, 233
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	326
Bsp1720I	GCTNAGC	1 cut(s)	369
BspANI	GGCC	2 cut(s)	194, 233
BspCNI	CTCAG	3 cut(s)	134, 337, 361
BspPI	GGATC	1 cut(s)	334
BsrDI	GCAATG	2 cut(s)	103, 195
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	66
BstBAI	YACGTR	1 cut(s)	356
BstDEI	CTNAG	3 cut(s)	121, 345, 369
BstKTI	GATC	1 cut(s)	329
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 215, 218, 230
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	6 cut(s)	4, 14, 196, 208, 230, 295
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	194, 233
CaiI	CAGNNNCTG	1 cut(s)	383
CspCI	CAANNNNNGTGG	4 cut(s)	85, 120, 459, 494
CviAII	CATG	1 cut(s)	313
DdeI	CTNAG	3 cut(s)	121, 345, 369
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
DraI	TTTAAA	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	1 cut(s)	316
FaiI	YATR	3 cut(s)	53, 139, 314
FatI	CATG	1 cut(s)	312
Fnu4HI	GCNGC	6 cut(s)	3, 18, 210, 219, 222, 309
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	6 cut(s)	3, 18, 210, 219, 222, 309
FspBI	CTAG	3 cut(s)	72, 93, 147
GluI	GCNGC	6 cut(s)	3, 18, 210, 219, 222, 309
HaeIII	GGCC	2 cut(s)	194, 233
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	1 cut(s)	316
HinfI	GANTC	4 cut(s)	37, 236, 347, 380
HpaII	CCGG	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	3 cut(s)	110, 123, 384
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	5 cut(s)	200, 218, 224, 332, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 215, 218, 230
HpyF3I	CTNAG	3 cut(s)	121, 345, 369
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	326
LmnI	GCTCC	1 cut(s)	454
LpnPI	CCDG	9 cut(s)	54, 66, 108, 189, 195, 369, 384, 390, 439
Lsp1109I	GCAGC	6 cut(s)	4, 14, 196, 208, 230, 295
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	3 cut(s)	72, 93, 147
MaeII	ACGT	1 cut(s)	355
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	3 cut(s)	60, 310, 494
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	3 cut(s)	408, 485, 497
MlyI	GAGTC	2 cut(s)	230, 356
MnlI	CCTC	3 cut(s)	20, 223, 250
MseI	TTAA	2 cut(s)	33, 413
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	4 cut(s)	206, 215, 218, 230
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	37, 380
PflMI	CCANNNNNTGG	1 cut(s)	383
PkrI	GCNGC	6 cut(s)	4, 19, 211, 220, 223, 310
PleI	GAGTC	2 cut(s)	230, 355
PpsI	GAGTC	2 cut(s)	230, 355
Ppu21I	YACGTR	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	326
PvuII	CAGCTG	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	33, 413
SatI	GCNGC	6 cut(s)	3, 18, 210, 219, 222, 309
Sau3AI	GATC	1 cut(s)	326
SchI	GAGTC	2 cut(s)	230, 356
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	122
SfaNI	GCATC	1 cut(s)	257
Sse9I	AATT	3 cut(s)	408, 485, 497
SspMI	CTAG	3 cut(s)	72, 93, 147
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	66
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	109
TasI	AATT	3 cut(s)	408, 485, 497
TfiI	GAWTC	2 cut(s)	37, 380
Tru1I	TTAA	2 cut(s)	33, 413
Tru9I	TTAA	2 cut(s)	33, 413
TseI	GCWGC	6 cut(s)	2, 17, 209, 218, 221, 308
TspDTI	ATGAA	2 cut(s)	381, 420
Van91I	CCANNNNNTGG	1 cut(s)	383
XapI	RAATTY	3 cut(s)	408, 485, 497
XspI	CTAG	3 cut(s)	72, 93, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.