Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000748

Physical Location & Seq

Genomic Coordinates Forward (+)

77942925 .. 77945639

Gene Structure 2715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG550900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGATAATTGCTAAGCCTCCAACAGAAAAGATACATCAGATCATTGCAAGAACGGCTGCGTTTGTCGCCAAGCATGGTGGACAGTCGGAAATTGTTTTGAGGGTGAAACAGGGAGACAATCCAATGTTTGGGTTCTTGATGCCTGACCATCACCTTCATGCATACTTTAGGTTTCTTGTCGATCACCAAGAACTACTGAAGCAGGATACTCACGGAGTTTCTGCACAGGAAGAGAAGAAAAACAGTGGTGGTCTTGATCAGACAGGTGGAGCATTGTCTTTGCTTGGTTCTGTATATGGGTCTGGAGAGGATGAGGATGACATGGCTGAGGATGCATCTGACTTACAAAAACTGAACTCTCAAGAAGCTGTTGATGCAATTATTGCAACTGTGCATGGGTCAGAGCAGAAAGAATCTACTGGAAATGTAACCGGGAAAAATGATACTGTTTCCAAGTTTCCATGTCCTCCTTTGAAGGAAAAAGTTAATCTCATTAAACATAATCGTATCACTAGCACAGTTAAAGGTGGAGCCACAAGTGGGATTAAGAAAGAAAGTGATGCCTCGGGATCACTTTCCACTGCTGCCAATAAGTCACAGGCTCCTGCCCTGCCTAGTGCATCGAAGGTTGAACTACCCATTTTGGAGCCACCATCTGATCAAAGGAGAGTTGTGGAGAAAATTGTTGAGTTCATGTTAAAGAACGGCAGAGAGTTTGAAGCTATTCTGGCTGAACAAAACTTTCTCCAAGATGCTCAAGAGCTCCATTGGAAGTTGATGTTTCAAATAAGGTGGAAGAATTTGACAAGAAATTTTCTGTTGATGAGTGTAATGAGCGATGATCAAAGAAGGCCTATCGTACTCTATCTAAAAGGGTTGAAGAAGAAGAAGATGGTGAAGGTGACGGTGATGAAGAAAAAGAGAGCAGGGAAGAAGATAAAACGGGTCAGAAGCACTCTAAGAAGCATCGGTCTCATCATTCTTCAGACAATGGTCATTACTGGATACTTACTAGCAGGATCTGCCATTGGACCCAGAGGCTTGAATTTGGTCAGTGAAATAGTCCAAGAGGCTTGTCTTTATTCCTATTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000380 GO:0000395 GO:0000398 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRY_EERY Surp

Protein Analysis

365

Amino Acids

40.3

Weight (kDa)

9.42

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	13 - 61	3.1e-15	Surp module

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100
fragaria_vesca	FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160
malus_domestica	MD11G1213100.v1.1 MD11G1213200.v1.1
prunus_persica	Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1
pyrus_communis	pycom11g18800
rosa_chinensis	RchiOBHm_Chr5g0040811
rosa_laevigata	RLG00000034004
rosa_multiflora	Rmu_co8000140.1_g000001 Rmu_sc0001579.1_g000004 Rmu_sc0013576.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432480 Rroxscaffold_1G00039890 Rroxscaffold_7G00202520 Rroxscaffold_7G00210240
rosa_rugosa	Rorug03G0107700 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187700 Rorug05G0187800 Rorug06G0332600 Rorug07G0294400
rosa_samantha	Rh2DG550900 Rh3CG305900 Rh5AG273200 Rh5BG278300 Rh5BG278400 Rh5CG310400 Rh5DG286300
rosa_wichuraiana	Rw5G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	128
AclWI	GGATC	2 cut(s)	577, 1027
AcsI	RAATTY	3 cut(s)	799, 811, 1045
AcuI	CTGAAG	2 cut(s)	218, 968
AfaI	GTAC	1 cut(s)	861
AfiI	CCNNNNNNNGG	2 cut(s)	128, 540
AgsI	TTSAA	6 cut(s)	475, 632, 719, 785, 880, 1045
AluBI	AGCT	3 cut(s)	368, 722, 763
AluI	AGCT	3 cut(s)	368, 722, 763
Alw21I	GWGCWC	1 cut(s)	765
Alw26I	GTCTC	2 cut(s)	108, 977
AlwI	GGATC	2 cut(s)	577, 1027
AlwNI	CAGNNNCTG	1 cut(s)	1022
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	1 cut(s)	851
ApeKI	GCWGC	2 cut(s)	56, 584
ApoI	RAATTY	3 cut(s)	799, 811, 1045
Asp700I	GAANNNNTTC	1 cut(s)	723
AspS9I	GGNCC	1 cut(s)	1031
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	6 cut(s)	115, 143, 176, 907, 913, 919
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	1 cut(s)	1031
BanII	GRGCYC	1 cut(s)	765
Bbv12I	GWGCWC	1 cut(s)	765
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	43, 571
BccI	CCATC	3 cut(s)	156, 661, 886
BceAI	ACGGC	2 cut(s)	69, 721
BciVI	GTATCC	2 cut(s)	199, 998
BclI	TGATCA	3 cut(s)	256, 658, 841
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	2 cut(s)	108, 977
BfaI	CTAG	3 cut(s)	513, 615, 1013
BfuI	GTATCC	2 cut(s)	199, 998
BisI	GCNGC	2 cut(s)	57, 585
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	2 cut(s)	58, 586
Bme1390I	CCNGG	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	1031
BmeT110I	CYCGRG	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	1031
BmiI	GGNNCC	4 cut(s)	532, 603, 648, 1033
BmrFI	CCNGG	1 cut(s)	433
BmsI	GCATC	8 cut(s)	129, 322, 344, 364, 550, 629, 742, 975
BoxI	GACNNNNGTC	1 cut(s)	992
BpmI	CTGGAG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	2 cut(s)	345, 741
BpuMI	CCSGG	1 cut(s)	433
BsaI	GGTCTC	1 cut(s)	977
BsaJI	CCNNGG	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 540
Bse1I	ACTGG	2 cut(s)	424, 1006
Bse3DI	GCAATG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	3 cut(s)	316, 322, 337
BseLI	CCNNNNNNNGG	2 cut(s)	128, 540
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	424, 1006
BseXI	GCAGC	2 cut(s)	43, 571
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	853
BsiHKAI	GWGCWC	1 cut(s)	765
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	128, 540
BsmAI	GTCTC	2 cut(s)	108, 977
BsnI	GGCC	1 cut(s)	853
Bso31I	GGTCTC	1 cut(s)	977
BsoBI	CYCGRG	1 cut(s)	565
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp143I	GATC	7 cut(s)	39, 181, 256, 569, 658, 841, 1019
Bsp1720I	GCTNAGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	853
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	4 cut(s)	532, 603, 648, 1033
BspPI	GGATC	2 cut(s)	577, 1027
BspTNI	GGTCTC	1 cut(s)	977
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	424, 1006
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	7 cut(s)	39, 181, 256, 569, 658, 841, 1019
Bst4CI	ACNGT	6 cut(s)	84, 245, 391, 448, 520, 907
Bst6I	CTCTTC	1 cut(s)	225
BstAPI	GCANNNNNTGC	2 cut(s)	383, 1022
BstDEI	CTNAG	3 cut(s)	12, 327, 959
BstF5I	GGATG	3 cut(s)	316, 322, 337
BstKTI	GATC	7 cut(s)	42, 184, 259, 572, 661, 844, 1022
BstMAI	GTCTC	2 cut(s)	108, 977
BstMBI	GATC	7 cut(s)	39, 181, 256, 569, 658, 841, 1019
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 65, 332, 374, 383, 728, 1022
BstPAI	GACNNNNGTC	1 cut(s)	992
BstSCI	CCNGG	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	43, 571
BstX2I	RGATCY	1 cut(s)	1019
BstYI	RGATCY	1 cut(s)	1019
BsuI	GTATCC	2 cut(s)	199, 998
BsuRI	GGCC	1 cut(s)	853
BtgZI	GCGATG	1 cut(s)	852
BtsCI	GGATG	3 cut(s)	316, 322, 337
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	3 cut(s)	250, 579, 1060
CaiI	CAGNNNCTG	1 cut(s)	1022
Cfr13I	GGNCC	1 cut(s)	1031
Csp6I	GTAC	1 cut(s)	860
CspCI	CAANNNNNGTGG	4 cut(s)	58, 93, 773, 808
CviAII	CATG	6 cut(s)	74, 158, 322, 395, 462, 694
CviQI	GTAC	1 cut(s)	860
DdeI	CTNAG	3 cut(s)	12, 327, 959
DpnI	GATC	7 cut(s)	41, 183, 258, 571, 660, 843, 1021
DpnII	GATC	7 cut(s)	39, 181, 256, 569, 658, 841, 1019
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	763
Eco147I	AGGCCT	1 cut(s)	853
Eco24I	GRGCYC	1 cut(s)	765
Eco31I	GGTCTC	1 cut(s)	977
Eco47I	GGWCC	1 cut(s)	1031
Eco53kI	GAGCTC	1 cut(s)	763
Eco57I	CTGAAG	2 cut(s)	218, 968
Eco88I	CYCGRG	1 cut(s)	565
EcoICRI	GAGCTC	1 cut(s)	763
EcoT22I	ATGCAT	2 cut(s)	163, 337
EcoT38I	GRGCYC	1 cut(s)	765
FaeI	CATG	6 cut(s)	77, 161, 325, 398, 465, 697
FatI	CATG	6 cut(s)	73, 157, 321, 394, 461, 693
FbaI	TGATCA	3 cut(s)	256, 658, 841
Fnu4HI	GCNGC	2 cut(s)	57, 585
FokI	GGATG	3 cut(s)	323, 329, 344
FriOI	GRGCYC	1 cut(s)	765
Fsp4HI	GCNGC	2 cut(s)	57, 585
FspBI	CTAG	3 cut(s)	513, 615, 1013
GluI	GCNGC	2 cut(s)	57, 585
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	853
HapII	CCGG	1 cut(s)	432
Hin1II	CATG	6 cut(s)	77, 161, 325, 398, 465, 697
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	6 cut(s)	115, 143, 176, 907, 913, 919
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	8 cut(s)	39, 88, 261, 340, 403, 658, 950, 987
Hpy188III	TCNNGA	6 cut(s)	136, 254, 303, 362, 567, 758
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	5 cut(s)	164, 469, 619, 843, 892
HpyCH4III	ACNGT	6 cut(s)	84, 245, 391, 448, 520, 907
HpyCH4V	TGCA	8 cut(s)	47, 161, 224, 335, 377, 386, 394, 620
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 65, 332, 374, 383, 728, 1022
HpyF3I	CTNAG	3 cut(s)	12, 327, 959
Hsp92II	CATG	6 cut(s)	77, 161, 325, 398, 465, 697
Ksp22I	TGATCA	3 cut(s)	256, 658, 841
Kzo9I	GATC	7 cut(s)	39, 181, 256, 569, 658, 841, 1019
LmnI	GCTCC	5 cut(s)	269, 530, 607, 646, 768
Lsp1109I	GCAGC	2 cut(s)	43, 571
LweI	GCATC	8 cut(s)	129, 322, 344, 364, 550, 629, 742, 975
MaeI	CTAG	3 cut(s)	513, 615, 1013
MaeIII	GTNAC	3 cut(s)	427, 594, 901
MalI	GATC	7 cut(s)	41, 183, 258, 571, 660, 843, 1021
MboI	GATC	7 cut(s)	39, 181, 256, 569, 658, 841, 1019
MflI	RGATCY	1 cut(s)	1019
MhlI	GDGCHC	1 cut(s)	765
MluCI	AATT	7 cut(s)	6, 90, 378, 681, 799, 811, 1045
MmeI	TCCRAC	2 cut(s)	44, 66
MnlI	CCTC	9 cut(s)	27, 93, 301, 307, 322, 477, 574, 1031, 1063
Mph1103I	ATGCAT	2 cut(s)	163, 337
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	5 cut(s)	486, 495, 522, 546, 698
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	7 cut(s)	53, 65, 332, 374, 383, 728, 1022
NciI	CCSGG	1 cut(s)	433
NdeII	GATC	7 cut(s)	39, 181, 256, 569, 658, 841, 1019
NlaIII	CATG	6 cut(s)	77, 161, 325, 398, 465, 697
NlaIV	GGNNCC	4 cut(s)	532, 603, 648, 1033
NmuCI	GTSAC	2 cut(s)	594, 901
NsiI	ATGCAT	2 cut(s)	163, 337
PceI	AGGCCT	1 cut(s)	853
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	1 cut(s)	413
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	58, 586
PshAI	GACNNNNGTC	1 cut(s)	992
Psp124BI	GAGCTC	1 cut(s)	765
PspN4I	GGNNCC	4 cut(s)	532, 603, 648, 1033
PspPI	GGNCC	1 cut(s)	1031
PstNI	CAGNNNCTG	1 cut(s)	1022
PsuI	RGATCY	1 cut(s)	1019
RsaI	GTAC	1 cut(s)	861
RsaNI	GTAC	1 cut(s)	860
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	765
SaqAI	TTAA	5 cut(s)	486, 495, 522, 546, 698
SatI	GCNGC	2 cut(s)	57, 585
Sau3AI	GATC	7 cut(s)	39, 181, 256, 569, 658, 841, 1019
Sau96I	GGNCC	1 cut(s)	1031
ScrFI	CCNGG	1 cut(s)	433
SduI	GDGCHC	1 cut(s)	765
SfaNI	GCATC	8 cut(s)	129, 322, 344, 364, 550, 629, 742, 975
SinI	GGWCC	1 cut(s)	1031
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	360, 756
SmoI	CTYRAG	2 cut(s)	360, 756
Sse9I	AATT	7 cut(s)	6, 90, 378, 681, 799, 811, 1045
SseBI	AGGCCT	1 cut(s)	853
SspMI	CTAG	3 cut(s)	513, 615, 1013
SstI	GAGCTC	1 cut(s)	765
StuI	AGGCCT	1 cut(s)	853
StyD4I	CCNGG	1 cut(s)	431
TaaI	ACNGT	6 cut(s)	84, 245, 391, 448, 520, 907
TaqI	TCGA	2 cut(s)	180, 623
TaqII	GACCGA	1 cut(s)	959
TasI	AATT	7 cut(s)	6, 90, 378, 681, 799, 811, 1045
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	5 cut(s)	486, 495, 522, 546, 698
Tru9I	TTAA	5 cut(s)	486, 495, 522, 546, 698
TscAI	CASTG	3 cut(s)	250, 586, 1060
TseFI	GTSAC	2 cut(s)	594, 901
TseI	GCWGC	2 cut(s)	56, 584
Tsp45I	GTSAC	2 cut(s)	594, 901
TspDTI	ATGAA	3 cut(s)	146, 682, 926
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	3 cut(s)	250, 586, 1060
Van91I	CCANNNNNTGG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	1031
XapI	RAATTY	3 cut(s)	799, 811, 1045
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	3 cut(s)	513, 615, 1013
Zsp2I	ATGCAT	2 cut(s)	163, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.