Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000748

Physical Location & Seq

Genomic Coordinates Reverse (-)

31927815 .. 31932373

Gene Structure 4559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG305900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTTTGGGTTCTTGATGCCTGACCATCACCTTCATGCATACTTTAGGTTTCTTGTCGATCACCAAGAACTACTGAAGCAGGATACTCACGGAGTTTCTGCACAGGAAGAGAAGAAAAACAGTGGTGGTCTTGATCAGACAGGTGGAGCATTGTCTTTGCTTGGTTCTGTATATGGGTCTGGAGAGGATGAGGATGACATGGCTGAGGATGCATCTGACTTGCAAAAACTGAACTCTCAAGAAGCTGTTGATGCAATTATTGCAACTGTGCATGGGTCAGAGCAGAAAGAATCTACTGGAAATGTAACCGGGAAAAATGATATTGTTTCCAAGTTTCCATGTCCTCCTTTGAAGGAAAAAGTTAATCTCATTAAACATAATCGTATCACTAGCACAGTTAAAGGTGGAGCCACAAGTGGGATGAAGAAAGAAAGTGATGCCTCGGGATCACTTTCCACTGCTGCCAATAAGTCACAGGCTCCTGCCCTACCTAGTGCATCGAAGGTTGAACTACCCATTTTGGAGCCACCATCTGATCAAAAGAGAGTTGTGGAGAAAATTGTTGAGTTCATATTAAAGAACGGCAGAGAGTTTGAAGCTATTCTGGCTGAACAGAACTGTAACAGGGAAGATTTTTGTTCCTTCTGCCATCTAATCAATATCATCCTTACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000380 GO:0000395 GO:0000398 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRY_EERY Surp

Protein Analysis

225

Amino Acids

24.41

Weight (kDa)

5.27

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100
fragaria_vesca	FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160
malus_domestica	MD11G1213100.v1.1 MD11G1213200.v1.1
prunus_persica	Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1
pyrus_communis	pycom11g18800
rosa_chinensis	RchiOBHm_Chr5g0040811
rosa_laevigata	RLG00000034004
rosa_multiflora	Rmu_co8000140.1_g000001 Rmu_sc0001579.1_g000004 Rmu_sc0013576.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432480 Rroxscaffold_1G00039890 Rroxscaffold_7G00202520 Rroxscaffold_7G00210240
rosa_rugosa	Rorug03G0107700 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187700 Rorug05G0187800 Rorug06G0332600 Rorug07G0294400
rosa_samantha	Rh2DG550900 Rh3CG305900 Rh5AG273200 Rh5BG278300 Rh5BG278400 Rh5CG310400 Rh5DG286300
rosa_wichuraiana	Rw5G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	454
AcuI	CTGAAG	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	417
AgsI	TTSAA	3 cut(s)	352, 509, 596
AluBI	AGCT	2 cut(s)	245, 599
AluI	AGCT	2 cut(s)	245, 599
AlwI	GGATC	1 cut(s)	454
Ama87I	CYCGRG	1 cut(s)	442
ApeKI	GCWGC	1 cut(s)	461
Asp700I	GAANNNNTTC	1 cut(s)	600
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	2 cut(s)	20, 53
AvaI	CYCGRG	1 cut(s)	442
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	3 cut(s)	33, 538, 657
BceAI	ACGGC	1 cut(s)	598
BciVI	GTATCC	1 cut(s)	76
BclI	TGATCA	2 cut(s)	133, 535
BcnI	CCSGG	1 cut(s)	310
BfaI	CTAG	2 cut(s)	390, 492
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	442
BmiI	GGNNCC	3 cut(s)	409, 480, 525
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	6 cut(s)	6, 199, 221, 241, 427, 506
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	5 cut(s)	193, 199, 214, 426, 663
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	448
BsgI	GTGCAG	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	417
BsoBI	CYCGRG	1 cut(s)	442
Bsp143I	GATC	4 cut(s)	58, 133, 446, 535
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	409, 480, 525
BspPI	GGATC	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	4 cut(s)	58, 133, 446, 535
Bst4CI	ACNGT	4 cut(s)	122, 268, 397, 620
Bst6I	CTCTTC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	5 cut(s)	193, 199, 214, 426, 663
BstKTI	GATC	4 cut(s)	61, 136, 449, 538
BstMBI	GATC	4 cut(s)	58, 133, 446, 535
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 251, 260, 605
BstSCI	CCNGG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	448
BsuI	GTATCC	1 cut(s)	76
BtsCI	GGATG	5 cut(s)	193, 199, 214, 426, 663
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	127, 456
CviAII	CATG	4 cut(s)	35, 199, 272, 339
CviJI	RGCY	7 cut(s)	203, 245, 410, 479, 526, 599, 608
CviKI_1	RGCY	7 cut(s)	203, 245, 410, 479, 526, 599, 608
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	4 cut(s)	60, 135, 448, 537
DpnII	GATC	4 cut(s)	58, 133, 446, 535
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	442
EcoT22I	ATGCAT	2 cut(s)	40, 214
FaeI	CATG	4 cut(s)	38, 202, 275, 342
FaiI	YATR	9 cut(s)	36, 40, 172, 174, 200, 273, 340, 378, 572
FatI	CATG	4 cut(s)	34, 198, 271, 338
FbaI	TGATCA	2 cut(s)	133, 535
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	5 cut(s)	200, 206, 221, 433, 650
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	2 cut(s)	390, 492
GluI	GCNGC	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	201
HapII	CCGG	1 cut(s)	309
Hin1II	CATG	4 cut(s)	38, 202, 275, 342
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	2 cut(s)	20, 53
Hpy188I	TCNGA	4 cut(s)	138, 217, 280, 535
Hpy188III	TCNNGA	5 cut(s)	13, 131, 180, 239, 444
HpyAV	CCTTC	4 cut(s)	41, 346, 496, 652
HpyCH4III	ACNGT	4 cut(s)	122, 268, 397, 620
HpyCH4V	TGCA	8 cut(s)	38, 101, 212, 223, 254, 263, 271, 497
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 251, 260, 605
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	38, 202, 275, 342
Ksp22I	TGATCA	2 cut(s)	133, 535
Kzo9I	GATC	4 cut(s)	58, 133, 446, 535
LmnI	GCTCC	4 cut(s)	146, 407, 484, 523
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	6 cut(s)	6, 199, 221, 241, 427, 506
MaeI	CTAG	2 cut(s)	390, 492
MaeIII	GTNAC	3 cut(s)	304, 471, 620
MalI	GATC	4 cut(s)	60, 135, 448, 537
MboI	GATC	4 cut(s)	58, 133, 446, 535
MboII	GAAGA	4 cut(s)	119, 124, 436, 641
MluCI	AATT	2 cut(s)	255, 558
MnlI	CCTC	5 cut(s)	178, 184, 199, 354, 451
Mph1103I	ATGCAT	2 cut(s)	40, 214
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	4 cut(s)	363, 372, 399, 575
MslI	CAYNNNNRTG	1 cut(s)	33
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	4 cut(s)	209, 251, 260, 605
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	4 cut(s)	58, 133, 446, 535
NlaIII	CATG	4 cut(s)	38, 202, 275, 342
NlaIV	GGNNCC	3 cut(s)	409, 480, 525
NmuCI	GTSAC	1 cut(s)	471
NsiI	ATGCAT	2 cut(s)	40, 214
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	463
PspN4I	GGNNCC	3 cut(s)	409, 480, 525
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	363, 372, 399, 575
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	4 cut(s)	58, 133, 446, 535
ScrFI	CCNGG	1 cut(s)	310
SetI	ASST	8 cut(s)	33, 50, 145, 247, 406, 493, 507, 601
SfaNI	GCATC	6 cut(s)	6, 199, 221, 241, 427, 506
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	2 cut(s)	255, 558
SspMI	CTAG	2 cut(s)	390, 492
StyD4I	CCNGG	1 cut(s)	308
TaaI	ACNGT	4 cut(s)	122, 268, 397, 620
TaqI	TCGA	2 cut(s)	57, 500
TasI	AATT	2 cut(s)	255, 558
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	4 cut(s)	363, 372, 399, 575
Tru9I	TTAA	4 cut(s)	363, 372, 399, 575
TscAI	CASTG	2 cut(s)	127, 463
TseFI	GTSAC	1 cut(s)	471
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	471
TspDTI	ATGAA	3 cut(s)	23, 437, 559
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	2 cut(s)	127, 463
XmnI	GAANNNNTTC	1 cut(s)	600
XspI	CTAG	2 cut(s)	390, 492
Zsp2I	ATGCAT	2 cut(s)	40, 214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.