Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000748

Physical Location & Seq

Genomic Coordinates Reverse (-)

35108247 .. 35109613

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG278400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGACTTGGAGGTGGTTGGCCGTCACGCGCTGCTTTTCGACGACGACAACAGCGCGTCGTTCGTCAACTCACCCGACGCGCTCGTCGAGTGGAACTCCCTCTTCATCGACCGCTACGACGTCCGTCACCTCCTCCCACTTCCTTTGCCTCCTCGTACGCGCCGCCGTCAGCCCCACCCCGATGCCTCGCTGGAGTCCGAGCTTGATCTCGAGCGCTACCACGATTTGCCGTCGCCGATGGAATGTAATTTGCAACAGTTTCATATCTCAAAGACGCAAGTAAGAGTATTCCTATTTAACTTGAGCCTTTTCTTTTGCCTCCACTTTTTATGCCGAATGCCTGATGTGTATCAATGGCTTTACTGTTATGTGAAAGTAAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000380 GO:0000395 GO:0000398 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRY_EERY Surp

Protein Analysis

128

Amino Acids

15.31

Weight (kDa)

5.8

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DRY_EERY	PF09750	2 - 81	1.9e-19	Alternative splicing regulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100
fragaria_vesca	FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160
malus_domestica	MD11G1213100.v1.1 MD11G1213200.v1.1
prunus_persica	Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1
pyrus_communis	pycom11g18800
rosa_chinensis	RchiOBHm_Chr5g0040811
rosa_laevigata	RLG00000034004
rosa_multiflora	Rmu_co8000140.1_g000001 Rmu_sc0001579.1_g000004 Rmu_sc0013576.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432480 Rroxscaffold_1G00039890 Rroxscaffold_7G00202520 Rroxscaffold_7G00210240
rosa_rugosa	Rorug03G0107700 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187700 Rorug05G0187800 Rorug06G0332600 Rorug07G0294400
rosa_samantha	Rh2DG550900 Rh3CG305900 Rh5AG273200 Rh5BG278300 Rh5BG278400 Rh5CG310400 Rh5DG286300
rosa_wichuraiana	Rw5G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AatII	GACGTC	1 cut(s)	123
AccII	CGCG	4 cut(s)	29, 56, 80, 160
AciI	CCGC	2 cut(s)	112, 163
AcoI	YGGCCR	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	157
AfeI	AGCGCT	1 cut(s)	215
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Ama87I	CYCGRG	1 cut(s)	209
Aor51HI	AGCGCT	1 cut(s)	215
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	31
AspLEI	GCGC	5 cut(s)	31, 56, 82, 162, 216
AsuHPI	GGTGA	2 cut(s)	63, 119
AvaI	CYCGRG	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	232
BceAI	ACGGC	3 cut(s)	6, 150, 214
BfoI	RGCGCY	1 cut(s)	217
BisI	GCNGC	2 cut(s)	32, 163
BlsI	GCNGC	2 cut(s)	33, 164
BmeT110I	CYCGRG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	172
BoxI	GACNNNNGTC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	322
BsaBI	GATNNNNATC	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	348
BseJI	GATNNNNATC	1 cut(s)	348
BseRI	GAGGAG	2 cut(s)	122, 141
BseXI	GCAGC	1 cut(s)	18
Bsh1236I	CGCG	4 cut(s)	29, 56, 80, 160
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	209
BsiWI	CGTACG	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	342
BsnI	GGCC	1 cut(s)	21
BsoBI	CYCGRG	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	2 cut(s)	112, 163
BspANI	GGCC	1 cut(s)	21
BspFNI	CGCG	4 cut(s)	29, 56, 80, 160
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	258, 365
Bst6I	CTCTTC	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	120
BstFNI	CGCG	4 cut(s)	29, 56, 80, 160
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	5 cut(s)	31, 56, 82, 162, 216
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMCI	CGRYCG	1 cut(s)	112
BstPAI	GACNNNNGTC	1 cut(s)	123
BstUI	CGCG	4 cut(s)	29, 56, 80, 160
BstV1I	GCAGC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	21
CfoI	GCGC	5 cut(s)	31, 56, 82, 162, 216
CseI	GACGC	3 cut(s)	45, 86, 283
Csp6I	GTAC	1 cut(s)	156
CspCI	CAANNNNNGTGG	2 cut(s)	126, 161
CviJI	RGCY	5 cut(s)	21, 172, 202, 306, 358
CviKI_1	RGCY	5 cut(s)	21, 172, 202, 306, 358
CviQI	GTAC	1 cut(s)	156
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco47III	AGCGCT	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	209
FaiI	YATR	3 cut(s)	264, 331, 369
Fnu4HI	GCNGC	2 cut(s)	32, 163
Fsp4HI	GCNGC	2 cut(s)	32, 163
GlaI	GCGC	5 cut(s)	30, 55, 81, 161, 215
GluI	GCNGC	2 cut(s)	32, 163
GsuI	CTGGAG	1 cut(s)	212
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	21
HgaI	GACGC	3 cut(s)	45, 86, 283
HhaI	GCGC	5 cut(s)	31, 56, 82, 162, 216
Hin1I	GRCGYC	1 cut(s)	120
Hin6I	GCGC	5 cut(s)	29, 54, 80, 160, 214
HinP1I	GCGC	5 cut(s)	29, 54, 80, 160, 214
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	2 cut(s)	63, 119
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	7 cut(s)	44, 47, 61, 80, 89, 122, 235
HpyCH4III	ACNGT	2 cut(s)	258, 365
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	253
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	120
HspAI	GCGC	5 cut(s)	29, 54, 80, 160, 214
Kzo9I	GATC	1 cut(s)	205
LpnPI	CCDG	2 cut(s)	176, 354
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	1 cut(s)	172
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	23, 125
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	1 cut(s)	94
MluCI	AATT	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	8 cut(s)	4, 110, 140, 143, 159, 162, 196, 329
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	342
MvnI	CGCG	4 cut(s)	29, 56, 80, 160
NdeII	GATC	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	23, 125
PaeR7I	CTCGAG	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 114
PctI	GAATGC	1 cut(s)	342
Pfl23II	CGTACG	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	33, 164
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PshAI	GACNNNNGTC	1 cut(s)	123
PspLI	CGTACG	1 cut(s)	155
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	32, 163
Sau3AI	GATC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	203
SetI	ASST	4 cut(s)	15, 123, 132, 204
SfaNI	GCATC	1 cut(s)	172
Sfr274I	CTCGAG	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	209, 301
SmoI	CTYRAG	2 cut(s)	209, 301
Sse9I	AATT	1 cut(s)	247
SsiI	CCGC	2 cut(s)	112, 163
TaaI	ACNGT	2 cut(s)	258, 365
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	4 cut(s)	39, 87, 108, 210
TasI	AATT	1 cut(s)	247
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseFI	GTSAC	2 cut(s)	23, 125
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	2 cut(s)	23, 125
TspDTI	ATGAA	2 cut(s)	94, 251
TspGWI	ACGGA	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	209
ZraI	GACGTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.