Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000748

Physical Location & Seq

Genomic Coordinates Reverse (-)

50632624 .. 50637845

Gene Structure 5222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGATAATTTCTAAGCCTCCAACAGAAAAGATACATCAGATCATTGCAAGAACGGCTGCGTTTGTTGCCAAGCATGGTGGACAGTCGGAAATTGTTTTGAGGGTGAAACAGGGAGACAATCCAATGTTTGGGTTCTTGATGCCTGACCATCACCAAGAACTAGTGAAGCAGGATACTCACGGAGTTTCTGCACAGGAAGAGAAGAAAAACAGTGGTGGTCTTGATCAGACAGGTGGAGCATTGTCTTTGCTTGGTTCTGTATATGGGTCTGGAGAGGATGAGGATGACATGGCTGAGGATGCATCTGACTTGCAAAAACTGAACTCTCAAGAAGCTGTTGATGCAATTATTGCAACTGTGCATGGGTCAGAGCAGAAAGAATCTACTGGAAATGTAACCGGGAAAAATGATACTGTTTCCAAGTTTCCATATCCTCCTTTGAAGGAAAAAGTTAATCTCATTAAACATAATCGTATCACTAGCACAGTTAAAGGTGGAGCCACAAGTGGGATGAAGAAAGAAAGTGATGCCTCGGGATCACTTTCCACTGCTGCTAATAAGTCACAGGCTCCTGCTCTGCCTAGTGCATCGAAGGTTGAACTACCCATTTTGGAGCCACCATCTGATCAAAGGAGAGTTGTGGAGAAAATTGTTGAGTTCATATTAAAGAACTGCAGAGAGTTTGAAGCTATTCTGGCTGAACAGAACTGTAAACAGGGAAGATTTTTGTTCCTTCTGCCATCTAATCAATATCATCCTTACTACTTGAAAGTTCTCCAAGATGCTCAAGAGCTCCATTGGAAGTTGATGTTTCAAATAAGGTGGAAGAATTTGACAAGAAATTTTCTGTTGATGAGTGTAATGAGCGATGATCAAAGAAGGCCTATCGTACTCTATCTAAAAGGGTTGAAGAAGAAGAAGATGGTGAAGGTGACGGTGAGTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000380 GO:0000395 GO:0000398 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRY_EERY Surp

Protein Analysis

315

Amino Acids

34.99

Weight (kDa)

9.07

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	13 - 51	6.4e-10	Surp module
Surp	PF01805	211 - 260	2.2e-08	Surp module

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100
fragaria_vesca	FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160
malus_domestica	MD11G1213100.v1.1 MD11G1213200.v1.1
prunus_persica	Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1
pyrus_communis	pycom11g18800
rosa_chinensis	RchiOBHm_Chr5g0040811
rosa_laevigata	RLG00000034004
rosa_multiflora	Rmu_co8000140.1_g000001 Rmu_sc0001579.1_g000004 Rmu_sc0013576.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432480 Rroxscaffold_1G00039890 Rroxscaffold_7G00202520 Rroxscaffold_7G00210240
rosa_rugosa	Rorug03G0107700 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187700 Rorug05G0187800 Rorug06G0332600 Rorug07G0294400
rosa_samantha	Rh2DG550900 Rh3CG305900 Rh5AG273200 Rh5BG278300 Rh5BG278400 Rh5CG310400 Rh5DG286300
rosa_wichuraiana	Rw5G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	128
AclWI	GGATC	1 cut(s)	544
AcsI	RAATTY	2 cut(s)	829, 841
AfaI	GTAC	1 cut(s)	891
AfiI	CCNNNNNNNGG	2 cut(s)	128, 507
AgsI	TTSAA	6 cut(s)	442, 599, 686, 769, 815, 910
AhdI	GACNNNNNGTC	1 cut(s)	939
AhlI	ACTAGT	1 cut(s)	160
AluBI	AGCT	3 cut(s)	335, 689, 793
AluI	AGCT	3 cut(s)	335, 689, 793
Alw21I	GWGCWC	1 cut(s)	795
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	544
Ama87I	CYCGRG	1 cut(s)	532
AoxI	GGCC	1 cut(s)	881
ApeKI	GCWGC	2 cut(s)	56, 551
ApoI	RAATTY	2 cut(s)	829, 841
Asp700I	GAANNNNTTC	1 cut(s)	690
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	4 cut(s)	115, 143, 937, 943
AvaI	CYCGRG	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	795
Bbv12I	GWGCWC	1 cut(s)	795
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	43, 538
BccI	CCATC	4 cut(s)	156, 628, 748, 916
BceAI	ACGGC	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	166
BclI	TGATCA	3 cut(s)	223, 625, 871
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	108
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	3 cut(s)	161, 480, 582
BfmI	CTRYAG	1 cut(s)	673
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	57, 552
BlsI	GCNGC	2 cut(s)	58, 553
Bme1390I	CCNGG	1 cut(s)	400
BmeRI	GACNNNNNGTC	1 cut(s)	939
BmeT110I	CYCGRG	1 cut(s)	532
BmiI	GGNNCC	3 cut(s)	499, 570, 615
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	7 cut(s)	129, 289, 311, 331, 517, 596, 772
BpmI	CTGGAG	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	2 cut(s)	312, 771
BpuMI	CCSGG	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 507
Bse1I	ACTGG	1 cut(s)	391
Bse3DI	GCAATG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	5 cut(s)	283, 289, 304, 516, 754
BseLI	CCNNNNNNNGG	2 cut(s)	128, 507
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	391
BseXI	GCAGC	2 cut(s)	43, 538
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	883
BsiHKAI	GWGCWC	1 cut(s)	795
BsiHKCI	CYCGRG	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	128, 507
BsmAI	GTCTC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	883
BsoBI	CYCGRG	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	5 cut(s)	39, 223, 536, 625, 871
BspANI	GGCC	1 cut(s)	883
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	3 cut(s)	499, 570, 615
BspMAI	CTGCAG	1 cut(s)	677
BspPI	GGATC	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	5 cut(s)	39, 223, 536, 625, 871
Bst4CI	ACNGT	7 cut(s)	84, 212, 358, 415, 487, 710, 937
Bst6I	CTCTTC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	12, 294
BstF5I	GGATG	5 cut(s)	283, 289, 304, 516, 754
BstKTI	GATC	5 cut(s)	42, 226, 539, 628, 874
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	5 cut(s)	39, 223, 536, 625, 871
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 65, 299, 341, 350, 695
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	673
BstV1I	GCAGC	2 cut(s)	43, 538
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	883
BtgZI	GCGATG	1 cut(s)	882
BtsCI	GGATG	5 cut(s)	283, 289, 304, 516, 754
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	2 cut(s)	217, 546
Csp6I	GTAC	1 cut(s)	890
CspCI	CAANNNNNGTGG	4 cut(s)	58, 93, 803, 838
CviAII	CATG	3 cut(s)	74, 289, 362
CviQI	GTAC	1 cut(s)	890
DdeI	CTNAG	2 cut(s)	12, 294
DpnI	GATC	5 cut(s)	41, 225, 538, 627, 873
DpnII	GATC	5 cut(s)	39, 223, 536, 625, 871
DriI	GACNNNNNGTC	1 cut(s)	939
Eam1104I	CTCTTC	1 cut(s)	192
Eam1105I	GACNNNNNGTC	1 cut(s)	939
EarI	CTCTTC	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	793
Eco147I	AGGCCT	1 cut(s)	883
Eco24I	GRGCYC	1 cut(s)	795
Eco53kI	GAGCTC	1 cut(s)	793
Eco88I	CYCGRG	1 cut(s)	532
EcoICRI	GAGCTC	1 cut(s)	793
EcoT22I	ATGCAT	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	795
FaeI	CATG	3 cut(s)	77, 292, 365
FaiI	YATR	8 cut(s)	75, 262, 264, 290, 363, 430, 468, 662
FatI	CATG	3 cut(s)	73, 288, 361
FbaI	TGATCA	3 cut(s)	223, 625, 871
Fnu4HI	GCNGC	2 cut(s)	57, 552
FokI	GGATG	5 cut(s)	290, 296, 311, 523, 741
FriOI	GRGCYC	1 cut(s)	795
Fsp4HI	GCNGC	2 cut(s)	57, 552
FspBI	CTAG	3 cut(s)	161, 480, 582
GluI	GCNGC	2 cut(s)	57, 552
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	883
HapII	CCGG	1 cut(s)	399
Hin1II	CATG	3 cut(s)	77, 292, 365
HinfI	GANTC	2 cut(s)	380, 940
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	4 cut(s)	115, 143, 937, 943
Hpy166II	GTNNAC	2 cut(s)	80, 713
Hpy188I	TCNGA	6 cut(s)	39, 88, 228, 307, 370, 625
Hpy188III	TCNNGA	6 cut(s)	136, 221, 270, 329, 534, 788
Hpy8I	GTNNAC	2 cut(s)	80, 713
HpyAV	CCTTC	5 cut(s)	436, 586, 743, 873, 922
HpyCH4III	ACNGT	7 cut(s)	84, 212, 358, 415, 487, 710, 937
HpyCH4V	TGCA	9 cut(s)	47, 191, 302, 313, 344, 353, 361, 587, 675
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 65, 299, 341, 350, 695
HpyF3I	CTNAG	2 cut(s)	12, 294
Hsp92II	CATG	3 cut(s)	77, 292, 365
Ksp22I	TGATCA	3 cut(s)	223, 625, 871
Kzo9I	GATC	5 cut(s)	39, 223, 536, 625, 871
LmnI	GCTCC	5 cut(s)	236, 497, 574, 613, 798
Lsp1109I	GCAGC	2 cut(s)	43, 538
LweI	GCATC	7 cut(s)	129, 289, 311, 331, 517, 596, 772
MaeI	CTAG	3 cut(s)	161, 480, 582
MaeIII	GTNAC	3 cut(s)	394, 561, 931
MalI	GATC	5 cut(s)	41, 225, 538, 627, 873
MboI	GATC	5 cut(s)	39, 223, 536, 625, 871
MboII	GAAGA	9 cut(s)	209, 214, 526, 732, 838, 922, 925, 928, 931
MhlI	GDGCHC	1 cut(s)	795
MluCI	AATT	6 cut(s)	6, 90, 345, 648, 829, 841
MmeI	TCCRAC	2 cut(s)	44, 66
MnlI	CCTC	7 cut(s)	27, 93, 268, 274, 289, 444, 541
Mph1103I	ATGCAT	1 cut(s)	304
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	4 cut(s)	453, 462, 489, 665
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	6 cut(s)	53, 65, 299, 341, 350, 695
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	5 cut(s)	39, 223, 536, 625, 871
NlaIII	CATG	3 cut(s)	77, 292, 365
NlaIV	GGNNCC	3 cut(s)	499, 570, 615
NmuCI	GTSAC	2 cut(s)	561, 931
NsiI	ATGCAT	1 cut(s)	304
PceI	AGGCCT	1 cut(s)	883
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	58, 553
Psp124BI	GAGCTC	1 cut(s)	795
PspN4I	GGNNCC	3 cut(s)	499, 570, 615
PstI	CTGCAG	1 cut(s)	677
RsaI	GTAC	1 cut(s)	891
RsaNI	GTAC	1 cut(s)	890
SacI	GAGCTC	1 cut(s)	795
SaqAI	TTAA	4 cut(s)	453, 462, 489, 665
SatI	GCNGC	2 cut(s)	57, 552
Sau3AI	GATC	5 cut(s)	39, 223, 536, 625, 871
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	1 cut(s)	795
SetI	ASST	8 cut(s)	235, 337, 496, 597, 691, 795, 824, 933
SfaNI	GCATC	7 cut(s)	129, 289, 311, 331, 517, 596, 772
SfcI	CTRYAG	1 cut(s)	673
SmlI	CTYRAG	2 cut(s)	327, 786
SmoI	CTYRAG	2 cut(s)	327, 786
SpeI	ACTAGT	1 cut(s)	160
Sse9I	AATT	6 cut(s)	6, 90, 345, 648, 829, 841
SseBI	AGGCCT	1 cut(s)	883
SspMI	CTAG	3 cut(s)	161, 480, 582
SstI	GAGCTC	1 cut(s)	795
StuI	AGGCCT	1 cut(s)	883
StyD4I	CCNGG	1 cut(s)	398
TaaI	ACNGT	7 cut(s)	84, 212, 358, 415, 487, 710, 937
TaqI	TCGA	1 cut(s)	590
TasI	AATT	6 cut(s)	6, 90, 345, 648, 829, 841
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	4 cut(s)	453, 462, 489, 665
Tru9I	TTAA	4 cut(s)	453, 462, 489, 665
TscAI	CASTG	2 cut(s)	217, 553
TseFI	GTSAC	2 cut(s)	561, 931
TseI	GCWGC	2 cut(s)	56, 551
Tsp45I	GTSAC	2 cut(s)	561, 931
TspDTI	ATGAA	2 cut(s)	527, 649
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	2 cut(s)	217, 553
Van91I	CCANNNNNTGG	1 cut(s)	128
XapI	RAATTY	2 cut(s)	829, 841
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	3 cut(s)	161, 480, 582
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.