Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013576.1

Orthogroup ID

OG0000748

Physical Location & Seq

Genomic Coordinates Reverse (-)

5980 .. 7760

Gene Structure 1781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013576.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atggagatatcggaacctgtggtggcttgcatttctgacttggccttcaaatttactggtaatgatgcagatgtgccgaacagtggtggctatcactctgttgcatttgcatatggaaacccggatgaaacaaccgagcagaagagtaatgatgctgagcctgtttttcgtccagcctttccggtgccagaaagtttgattcaaaaccttatgctcggagcaggcatgcagttcttgttaccaagggtctgtgcaggtgggattaggatgcctccaacagaaaagatacatcagatcattgcaagaacggctgcgtttgtcgccaagcatggtggacagtcagaaattgttttgagggtgaaacagggagacaatccaatgtttgggttcttgatgcctgaccatcaccttcatgcatactttaggtttcttgtcgatcaccaagaactactgaagcaggatactcacggagtttctgcacaggaagagaagaaaaacagtggtggtcttgatcagacaggtggagcattgtctttgcttggttctgtatatgggtctggagaggatgaggatgacatggatgaggatgcatctgacttgcaaaaactgaattctcaagaagctgttgatgcaattattgcaactgtgcatgggtcaaagcagaaagaatctactggaaatgtaaccgggaaaaatgatactgtttccaagtttccatgtcctcctttgaaggaaaaagttaatctcattaaacataatcctatcactagcacagttaaaggtggagccacaagtgggatgaagaaagaaagtgatgcctcgggatcactttccactgctgccaataagtacaggctcctgccctgcctaatgcatcgaaggttgaactacccattttggagccaccatctgatcaaaggagagttgtggagaaaattgttgagttcatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000380 GO:0000395 GO:0000398 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRY_EERY Surp

Protein Analysis

317

Amino Acids

34.57

Weight (kDa)

6.11

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100
fragaria_vesca	FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160
malus_domestica	MD11G1213100.v1.1 MD11G1213200.v1.1
prunus_persica	Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1
pyrus_communis	pycom11g18800
rosa_chinensis	RchiOBHm_Chr5g0040811
rosa_laevigata	RLG00000034004
rosa_multiflora	Rmu_co8000140.1_g000001 Rmu_sc0001579.1_g000004 Rmu_sc0013576.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432480 Rroxscaffold_1G00039890 Rroxscaffold_7G00202520 Rroxscaffold_7G00210240
rosa_rugosa	Rorug03G0107700 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187700 Rorug05G0187800 Rorug06G0332600 Rorug07G0294400
rosa_samantha	Rh2DG550900 Rh3CG305900 Rh5AG273200 Rh5BG278300 Rh5BG278400 Rh5CG310400 Rh5DG286300
rosa_wichuraiana	Rw5G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	383
AclWI	GGATC	1 cut(s)	832
AcsI	RAATTY	2 cut(s)	50, 610
AcuI	CTGAAG	1 cut(s)	473
AfaI	GTAC	1 cut(s)	851
AfiI	CCNNNNNNNGG	3 cut(s)	83, 383, 795
AgsI	TTSAA	4 cut(s)	49, 203, 730, 886
AluBI	AGCT	1 cut(s)	623
AluI	AGCT	1 cut(s)	623
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	832
Ama87I	CYCGRG	1 cut(s)	820
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	2 cut(s)	311, 839
ApoI	RAATTY	2 cut(s)	50, 610
AsuC2I	CCSGG	2 cut(s)	122, 688
AsuHPI	GGTGA	3 cut(s)	370, 398, 431
AvaI	CYCGRG	1 cut(s)	820
BanI	GGYRCC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	298, 826
BccI	CCATC	2 cut(s)	411, 915
BceAI	ACGGC	1 cut(s)	324
BciVI	GTATCC	1 cut(s)	454
BclI	TGATCA	2 cut(s)	511, 912
BcnI	CCSGG	2 cut(s)	122, 688
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	768
BfuAI	ACCTGC	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	2 cut(s)	312, 840
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	2 cut(s)	313, 841
Bme1390I	CCNGG	2 cut(s)	122, 688
BmeT110I	CYCGRG	1 cut(s)	820
BmiI	GGNNCC	5 cut(s)	15, 186, 787, 857, 902
BmrFI	CCNGG	2 cut(s)	122, 688
BmsI	GCATC	9 cut(s)	55, 142, 258, 384, 577, 599, 619, 805, 883
BpmI	CTGGAG	1 cut(s)	579
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	600
BpuMI	CCSGG	2 cut(s)	122, 688
BsaJI	CCNNGG	2 cut(s)	242, 819
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 383, 795
Bse1I	ACTGG	2 cut(s)	61, 679
Bse3DI	GCAATG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	242, 819
BseGI	GGATG	7 cut(s)	130, 273, 571, 577, 586, 592, 804
BseLI	CCNNNNNNNGG	3 cut(s)	83, 383, 795
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	61, 679
BseXI	GCAGC	2 cut(s)	298, 826
BsgI	GTGCAG	2 cut(s)	273, 462
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	184
BsiHKCI	CYCGRG	1 cut(s)	820
BsiSI	CCGG	3 cut(s)	122, 182, 687
BslI	CCNNNNNNNGG	3 cut(s)	83, 383, 795
BsmAI	GTCTC	1 cut(s)	363
BsnI	GGCC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	820
Bsp143I	GATC	5 cut(s)	294, 436, 511, 824, 912
Bsp1720I	GCTNAGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	5 cut(s)	15, 186, 787, 857, 902
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	832
BspT107I	GGYRCC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	61, 679
BssECI	CCNNGG	2 cut(s)	242, 819
BssMI	GATC	5 cut(s)	294, 436, 511, 824, 912
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	6 cut(s)	83, 339, 500, 646, 703, 775
Bst6I	CTCTTC	2 cut(s)	137, 480
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstC8I	GCNNGC	3 cut(s)	28, 223, 227
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	7 cut(s)	130, 273, 571, 577, 586, 592, 804
BstKTI	GATC	5 cut(s)	297, 439, 514, 827, 915
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	5 cut(s)	294, 436, 511, 824, 912
BstMWI	GCNNNNNNNGC	4 cut(s)	308, 320, 629, 638
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	120, 686
BstV1I	GCAGC	2 cut(s)	298, 826
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	7 cut(s)	130, 273, 571, 577, 586, 592, 804
BtsI	GCAGTG	1 cut(s)	834
BtsIMutI	CAGTG	3 cut(s)	88, 505, 834
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	3 cut(s)	28, 223, 227
Csp6I	GTAC	1 cut(s)	850
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	6 cut(s)	226, 329, 413, 577, 650, 717
CviQI	GTAC	1 cut(s)	850
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	5 cut(s)	296, 438, 513, 826, 914
DpnII	GATC	5 cut(s)	294, 436, 511, 824, 912
Eam1104I	CTCTTC	2 cut(s)	137, 480
EarI	CTCTTC	2 cut(s)	137, 480
Eco130I	CCWWGG	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	820
EcoRI	GAATTC	1 cut(s)	610
EcoRV	GATATC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	242
EcoT22I	ATGCAT	3 cut(s)	418, 592, 876
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	6 cut(s)	229, 332, 416, 580, 653, 720
FatI	CATG	6 cut(s)	225, 328, 412, 576, 649, 716
FauNDI	CATATG	1 cut(s)	112
FbaI	TGATCA	2 cut(s)	511, 912
Fnu4HI	GCNGC	2 cut(s)	312, 840
FokI	GGATG	7 cut(s)	137, 280, 578, 584, 593, 599, 811
Fsp4HI	GCNGC	2 cut(s)	312, 840
FspBI	CTAG	1 cut(s)	768
GluI	GCNGC	2 cut(s)	312, 840
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	3 cut(s)	122, 182, 687
Hin1II	CATG	6 cut(s)	229, 332, 416, 580, 653, 720
HinfI	GANTC	2 cut(s)	199, 668
HpaII	CCGG	3 cut(s)	122, 182, 687
HphI	GGTGA	3 cut(s)	370, 398, 431
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	8 cut(s)	13, 37, 218, 294, 343, 516, 595, 912
Hpy188III	TCNNGA	5 cut(s)	391, 509, 558, 617, 822
Hpy8I	GTNNAC	1 cut(s)	335
HpyAV	CCTTC	4 cut(s)	55, 419, 724, 873
HpyCH4III	ACNGT	6 cut(s)	83, 339, 500, 646, 703, 775
HpyF10VI	GCNNNNNNNGC	4 cut(s)	308, 320, 629, 638
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	6 cut(s)	229, 332, 416, 580, 653, 720
Ksp22I	TGATCA	2 cut(s)	511, 912
Kzo9I	GATC	5 cut(s)	294, 436, 511, 824, 912
LmnI	GCTCC	5 cut(s)	218, 524, 785, 861, 900
Lsp1109I	GCAGC	2 cut(s)	298, 826
LweI	GCATC	9 cut(s)	55, 142, 258, 384, 577, 599, 619, 805, 883
MaeI	CTAG	1 cut(s)	768
MaeIII	GTNAC	2 cut(s)	237, 682
MalI	GATC	5 cut(s)	296, 438, 513, 826, 914
MboI	GATC	5 cut(s)	294, 436, 511, 824, 912
MboII	GAAGA	4 cut(s)	154, 497, 502, 814
MluCI	AATT	5 cut(s)	50, 345, 610, 633, 935
MmeI	TCCRAC	1 cut(s)	299
MnlI	CCTC	7 cut(s)	282, 348, 556, 562, 577, 732, 829
Mph1103I	ATGCAT	3 cut(s)	418, 592, 876
MseI	TTAA	4 cut(s)	741, 750, 777, 952
MslI	CAYNNNNRTG	1 cut(s)	411
MspI	CCGG	3 cut(s)	122, 182, 687
MspR9I	CCNGG	2 cut(s)	122, 688
MwoI	GCNNNNNNNGC	4 cut(s)	308, 320, 629, 638
NciI	CCSGG	2 cut(s)	122, 688
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	5 cut(s)	294, 436, 511, 824, 912
NlaIII	CATG	6 cut(s)	229, 332, 416, 580, 653, 720
NlaIV	GGNNCC	5 cut(s)	15, 186, 787, 857, 902
NsiI	ATGCAT	3 cut(s)	418, 592, 876
NspI	RCATGY	1 cut(s)	229
PaeI	GCATGC	1 cut(s)	229
PaqCI	CACCTGC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	199, 668
PflMI	CCANNNNNTGG	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	313, 841
PspN4I	GGNNCC	5 cut(s)	15, 186, 787, 857, 902
RsaI	GTAC	1 cut(s)	851
RsaNI	GTAC	1 cut(s)	850
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	741, 750, 777, 952
SatI	GCNGC	2 cut(s)	312, 840
Sau3AI	GATC	5 cut(s)	294, 436, 511, 824, 912
ScrFI	CCNGG	2 cut(s)	122, 688
SetI	ASST	9 cut(s)	19, 210, 259, 411, 428, 523, 625, 784, 884
SfaNI	GCATC	9 cut(s)	55, 142, 258, 384, 577, 599, 619, 805, 883
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
SphI	GCATGC	1 cut(s)	229
Sse9I	AATT	5 cut(s)	50, 345, 610, 633, 935
SspMI	CTAG	1 cut(s)	768
StyD4I	CCNGG	2 cut(s)	120, 686
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	6 cut(s)	83, 339, 500, 646, 703, 775
TaqI	TCGA	2 cut(s)	435, 877
TasI	AATT	5 cut(s)	50, 345, 610, 633, 935
TatI	WGTACW	1 cut(s)	849
TfiI	GAWTC	2 cut(s)	199, 668
Tru1I	TTAA	4 cut(s)	741, 750, 777, 952
Tru9I	TTAA	4 cut(s)	741, 750, 777, 952
TscAI	CASTG	3 cut(s)	88, 505, 841
TseI	GCWGC	2 cut(s)	311, 839
TspDTI	ATGAA	4 cut(s)	141, 401, 815, 936
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	3 cut(s)	88, 505, 841
Van91I	CCANNNNNTGG	1 cut(s)	383
XapI	RAATTY	2 cut(s)	50, 610
XceI	RCATGY	1 cut(s)	229
XspI	CTAG	1 cut(s)	768
Zsp2I	ATGCAT	3 cut(s)	418, 592, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.