Rorug05G0187700

Splicing factor, suppressor of white-apricot homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
18250541 .. 18251211
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0187700.1

Sequence Viewer

Length: 201 bp
ATGGAGCTCCAGCGTTTTGAAACGCAGCAGAAGCGGGTTCTTGTTTTGACAGGGCAACCTGGTGAGGATGCTCACTATTTTGTCTTGAGGTGGGGTTTCACTACTGTTTCAGGAATCTTCCGGCAGTGCAAATCTGTTTCAAATCACATCTTCGAGAAGACGTACAATTGTTTGCTGGCTGTAATTTCTGTTCGTAATTGA

Protein Analysis

66

Amino Acids

7.69

Weight (kDa)

9.24

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 34
AfaI GTAC 1 cut(s) 164
AgsI TTSAA 2 cut(s) 20, 141
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw21I GWGCWC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 74
BanII GRGCYC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 60
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 9
BspACI CCGC 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 177
BstF5I GGATG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 177
CsiI ACCWGGT 1 cut(s) 58
Csp6I GTAC 1 cut(s) 163
CviJI RGCY 2 cut(s) 7, 179
CviKI_1 RGCY 2 cut(s) 7, 179
CviQI GTAC 1 cut(s) 163
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 9
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 26
HapII CCGG 1 cut(s) 121
HinfI GANTC 1 cut(s) 114
HpaII CCGG 1 cut(s) 121
HphI GGTGA 1 cut(s) 74
Hpy188III TCNNGA 3 cut(s) 85, 111, 154
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 161
LmnI GCTCC 2 cut(s) 4, 12
LpnPI CCDG 7 cut(s) 23, 36, 45, 72, 96, 134, 161
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 58
MabI ACCWGGT 1 cut(s) 58
MaeII ACGT 1 cut(s) 161
MboII GAAGA 3 cut(s) 109, 142, 169
MfeI CAATTG 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 3 cut(s) 166, 183, 196
MnlI CCTC 2 cut(s) 58, 81
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 60
MunI CAATTG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 27
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PsrI GAACNNNNNNTAC 1 cut(s) 174
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SacI GAGCTC 1 cut(s) 9
SatI GCNGC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 1 cut(s) 9
SetI ASST 4 cut(s) 9, 61, 92, 164
SexAI ACCWGGT 1 cut(s) 58
SfaNI GCATC 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 3 cut(s) 166, 183, 196
SsiI CCGC 1 cut(s) 34
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 153
TasI AATT 3 cut(s) 166, 183, 196
TfiI GAWTC 1 cut(s) 114
TscAI CASTG 1 cut(s) 131
TseI GCWGC 1 cut(s) 25
TspRI CASTG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.