Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000748

Physical Location & Seq

Genomic Coordinates Forward (+)

28802891 .. 28803874

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0294400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCTTGATATGGTTGGCTTTATCGACCCTGCACACACCGGTATAATTGGGTGTGGAAATTCCACTGAATGGGCACGGTCTATGTCAAATCGGTATATGTTAGGGAAACCGGGGCAGATATTTTTGGTTCCATATAACTCAGGGTATTATGCTCATTGGATGTTGTCGGTGGTGAACCCGGATGAAGAAGCCGTGCATTTCATGGATCCGCTAAAAAGGCGACTATGTGCTGGTGAATGGAAAACTATTGTCGACAACTCCGTTAAAATCTTCAATGCCCAAAAGGGTAGGAAAGGAAGGAAAATAATCCAATGCAAGAATCTTGTTGGTATTCTGGAGCAAACTGATTCAAAGACTTGTGGTTATTTCGTCATGCGTTATATGAAAGAAATTGTGGAGGACAAGAACTTGGAGTTTGCTACCAAGTGGGAAAGGAAATCAAATCTTGCTTACAAACAGAAGGATATTGATGTGGTTCGAGCTGAATGGGCAAATCATGTTATACAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000380 GO:0000395 GO:0000398 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRY_EERY Surp

Protein Analysis

170

Amino Acids

19.66

Weight (kDa)

9.0

Isoelectric Point (pI)

21.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	42 - 165	2.1e-07	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100
fragaria_vesca	FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160
malus_domestica	MD11G1213100.v1.1 MD11G1213200.v1.1
prunus_persica	Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1
pyrus_communis	pycom11g18800
rosa_chinensis	RchiOBHm_Chr5g0040811
rosa_laevigata	RLG00000034004
rosa_multiflora	Rmu_co8000140.1_g000001 Rmu_sc0001579.1_g000004 Rmu_sc0013576.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432480 Rroxscaffold_1G00039890 Rroxscaffold_7G00202520 Rroxscaffold_7G00210240
rosa_rugosa	Rorug03G0107700 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187700 Rorug05G0187800 Rorug06G0332600 Rorug07G0294400
rosa_samantha	Rh2DG550900 Rh3CG305900 Rh5AG273200 Rh5BG278300 Rh5BG278400 Rh5CG310400 Rh5DG286300
rosa_wichuraiana	Rw5G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	2 cut(s)	200, 213
AcsI	RAATTY	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgeI	ACCGGT	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	274, 351
AluBI	AGCT	1 cut(s)	482
AluI	AGCT	1 cut(s)	482
AlwI	GGATC	2 cut(s)	200, 213
ApoI	RAATTY	1 cut(s)	58
AsiGI	ACCGGT	1 cut(s)	38
AsuC2I	CCSGG	2 cut(s)	111, 179
AsuHPI	GGTGA	2 cut(s)	184, 245
BaeGI	GKGCMC	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	176
BcnI	CCSGG	2 cut(s)	111, 179
Bme1390I	CCNGG	2 cut(s)	111, 179
BmiI	GGNNCC	2 cut(s)	129, 207
BmrFI	CCNGG	2 cut(s)	111, 179
BpmI	CTGGAG	1 cut(s)	356
BpuMI	CCSGG	2 cut(s)	111, 179
BsaJI	CCNNGG	1 cut(s)	110
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	2 cut(s)	165, 187
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	15
BshTI	ACCGGT	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	39, 110, 179
BslI	CCNNNNNNNGG	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	152
BspLI	GGNNCC	2 cut(s)	129, 207
BspPI	GGATC	2 cut(s)	200, 213
BsrFI	RCCGGY	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	205
Bst4CI	ACNGT	2 cut(s)	78, 507
BstDEI	CTNAG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	165, 187
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 488
BstSCI	CCNGG	2 cut(s)	109, 177
BstSLI	GKGCMC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	165, 187
BtsIMutI	CAGTG	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	38
CspAI	ACCGGT	1 cut(s)	38
CviAII	CATG	3 cut(s)	202, 373, 497
CviJI	RGCY	3 cut(s)	18, 191, 482
CviKI_1	RGCY	3 cut(s)	18, 191, 482
DdeI	CTNAG	1 cut(s)	139
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
FaeI	CATG	3 cut(s)	205, 376, 500
FatI	CATG	3 cut(s)	201, 372, 496
FblI	GTMKAC	1 cut(s)	252
FokI	GGATG	2 cut(s)	172, 194
GsuI	CTGGAG	1 cut(s)	356
HapII	CCGG	3 cut(s)	39, 110, 179
Hin1II	CATG	3 cut(s)	205, 376, 500
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	319, 347
HpaII	CCGG	3 cut(s)	39, 110, 179
HphI	GGTGA	2 cut(s)	184, 245
Hpy166II	GTNNAC	2 cut(s)	175, 253
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	2 cut(s)	175, 253
HpyAV	CCTTC	2 cut(s)	291, 454
HpyCH4III	ACNGT	2 cut(s)	78, 507
HpyCH4V	TGCA	3 cut(s)	32, 196, 315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 488
HpyF3I	CTNAG	1 cut(s)	139
Hsp92II	CATG	3 cut(s)	205, 376, 500
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	7 cut(s)	42, 52, 123, 126, 192, 216, 320
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	2 cut(s)	197, 262
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	3 cut(s)	45, 58, 390
MnlI	CCTC	1 cut(s)	391
MseI	TTAA	1 cut(s)	264
MspI	CCGG	3 cut(s)	39, 110, 179
MspR9I	CCNGG	2 cut(s)	111, 179
MwoI	GCNNNNNNNGC	2 cut(s)	217, 488
NciI	CCSGG	2 cut(s)	111, 179
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	205, 376, 500
NlaIV	GGNNCC	2 cut(s)	129, 207
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	319, 347
PflMI	CCANNNNNTGG	1 cut(s)	69
PinAI	ACCGGT	1 cut(s)	38
PspN4I	GGNNCC	2 cut(s)	129, 207
PsuI	RGATCY	1 cut(s)	205
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	111, 179
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	1 cut(s)	484
Sse9I	AATT	3 cut(s)	45, 58, 390
SsiI	CCGC	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	109, 177
TaaI	ACNGT	2 cut(s)	78, 507
TaqI	TCGA	3 cut(s)	24, 252, 478
TasI	AATT	3 cut(s)	45, 58, 390
TfiI	GAWTC	2 cut(s)	319, 347
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	190, 198, 398
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	70
Van91I	CCANNNNNTGG	1 cut(s)	69
XapI	RAATTY	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.