Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000748

Physical Location & Seq

Genomic Coordinates Reverse (-)

60504678 .. 60508373

Gene Structure 3696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCCGGACGCGCCGCGACGCGCCGCCACAAGCGGCGGGTCAATCGGCGGTCAACGGCGGCGGTCAACGCCGGATCAACCACCTCCGATGGCAAAGTGACCAACTACAAACTTGTTGGAAATAAAGAGTTTCTTGTCGATCACCAAGAACTACTGAAGCAGGATACTCACGGAGTTTCTGCACAAGAAGAGAAGAAAAACAGTGGTGGTCTTGATCAGACAGGTGGAGCATTGTCTTTGCTTGGTTCTGTATATGGGTCTGGAGAGGATGAGGATGACATGGCTGAGGATGCATCTGACTTGCAAAAACTGAACTCTCAAGAAGCTGTTGATGCAATTATTGCAACTGTGCATGGGTCAGAGCAGAAAGAATCTACTGGAAATGTAACCGGGAAAAATGATACTGTTTCCAAGTTTCCATGTCCTCCTTTGAAGGAAAAAGTTAATCTCATTAAACATAATCGTATCACTAGCACAGTTAAAGGTGGAGCCACAAGTGGGATGAAGAAAGAAAGTGATGCCTCGGGATCACTTTCCAAGATGCTCAAGAGGTGCGTATCTGCAGAACCTTGCAGTTTCTGTTTTTTTCTTGCTCCATTGGAAGTTGATGTTTCAAATAAGGTGGAAGAATTTGACAAGAAATTTTCTGTTGATGAGTGTAATGAGCGACGATCAAAGAAGGCCTATCGTACTCTATCTAAAAGGGTTGAAGAAGAAGAAGATGGTGAAGGTGACAGTGATGAAGAAAAAGAGAGCAGGGAAGAAGTTAAAATGGGTCAGAAGCACTCTAAGAAGAGTCGGTCTCATCATTCTTCAGACAATGGCTCCAAACAAGGACAGCAGCTGCAGTGTCAGAAAATGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000380 GO:0000395 GO:0000398 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRY_EERY Surp

Protein Analysis

288

Amino Acids

31.53

Weight (kDa)

7.09

Isoelectric Point (pI)

51.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100 AT5G55100
fragaria_vesca	FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160 FvH4_3g23160
malus_domestica	MD11G1213100.v1.1 MD11G1213200.v1.1
prunus_persica	Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1 Prupe.4G218000_v2.0.a1
pyrus_communis	pycom11g18800
rosa_chinensis	RchiOBHm_Chr5g0040811
rosa_laevigata	RLG00000034004
rosa_multiflora	Rmu_co8000140.1_g000001 Rmu_sc0001579.1_g000004 Rmu_sc0013576.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432480 Rroxscaffold_1G00039890 Rroxscaffold_7G00202520 Rroxscaffold_7G00210240
rosa_rugosa	Rorug03G0107700 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187600 Rorug05G0187700 Rorug05G0187800 Rorug06G0332600 Rorug07G0294400
rosa_samantha	Rh2DG550900 Rh3CG305900 Rh5AG273200 Rh5BG278300 Rh5BG278400 Rh5CG310400 Rh5DG286300
rosa_wichuraiana	Rw5G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	12, 17, 22
AciI	CCGC	7 cut(s)	15, 25, 34, 37, 49, 59, 62
AclWI	GGATC	2 cut(s)	82, 535
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	629, 641
AcuI	CTGAAG	2 cut(s)	176, 798
AfaI	GTAC	1 cut(s)	691
AfiI	CCNNNNNNNGG	1 cut(s)	498
AgsI	TTSAA	3 cut(s)	433, 615, 710
AluBI	AGCT	2 cut(s)	326, 844
AluI	AGCT	2 cut(s)	326, 844
Alw26I	GTCTC	1 cut(s)	807
AlwI	GGATC	2 cut(s)	82, 535
AlwNI	CAGNNNCTG	2 cut(s)	579, 844
Ama87I	CYCGRG	1 cut(s)	523
AoxI	GGCC	2 cut(s)	3, 681
ApeKI	GCWGC	2 cut(s)	841, 844
ApoI	RAATTY	2 cut(s)	629, 641
AspLEI	GCGC	2 cut(s)	14, 24
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	3 cut(s)	134, 737, 743
AvaI	CYCGRG	1 cut(s)	523
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	831, 853
BccI	CCATC	2 cut(s)	83, 716
BceAI	ACGGC	1 cut(s)	72
BciVI	GTATCC	1 cut(s)	157
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	807
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	2 cut(s)	561, 845
BfuI	GTATCC	1 cut(s)	157
BisI	GCNGC	6 cut(s)	15, 25, 35, 60, 842, 845
BlsI	GCNGC	6 cut(s)	16, 26, 36, 61, 843, 846
Bme1390I	CCNGG	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	523
BmiI	GGNNCC	2 cut(s)	490, 826
BmrFI	CCNGG	1 cut(s)	391
BmsI	GCATC	5 cut(s)	280, 302, 322, 508, 531
BplI	GAGNNNNNCTC	2 cut(s)	787, 819
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	2 cut(s)	303, 530
BpuMI	CCSGG	1 cut(s)	391
BsaI	GGTCTC	1 cut(s)	807
BsaJI	CCNNGG	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	809, 839
Bsc4I	CCNNNNNNNGG	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	4 cut(s)	274, 280, 295, 507
BseLI	CCNNNNNNNGG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	831, 853
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	3 cut(s)	12, 17, 22
BshFI	GGCC	2 cut(s)	5, 683
BsiHKCI	CYCGRG	1 cut(s)	523
BsiSI	CCGG	3 cut(s)	6, 72, 390
BslI	CCNNNNNNNGG	1 cut(s)	498
BsmAI	GTCTC	1 cut(s)	807
BsnI	GGCC	2 cut(s)	5, 683
Bso31I	GGTCTC	1 cut(s)	807
BsoBI	CYCGRG	1 cut(s)	523
Bsp143I	GATC	5 cut(s)	74, 139, 214, 527, 671
BspACI	CCGC	7 cut(s)	15, 25, 34, 37, 49, 59, 62
BspANI	GGCC	2 cut(s)	5, 683
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	3 cut(s)	12, 17, 22
BspLI	GGNNCC	2 cut(s)	490, 826
BspMAI	CTGCAG	2 cut(s)	565, 849
BspPI	GGATC	2 cut(s)	82, 535
BspTNI	GGTCTC	1 cut(s)	807
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	5 cut(s)	74, 139, 214, 527, 671
Bst4CI	ACNGT	5 cut(s)	203, 349, 406, 478, 737
Bst6I	CTCTTC	2 cut(s)	183, 788
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstDEI	CTNAG	2 cut(s)	285, 789
BstF5I	GGATG	4 cut(s)	274, 280, 295, 507
BstFNI	CGCG	3 cut(s)	12, 17, 22
BstHHI	GCGC	2 cut(s)	14, 24
BstKTI	GATC	5 cut(s)	77, 142, 217, 530, 674
BstMAI	GTCTC	1 cut(s)	807
BstMBI	GATC	5 cut(s)	74, 139, 214, 527, 671
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 68, 290, 332, 341
BstSCI	CCNGG	1 cut(s)	389
BstSFI	CTRYAG	2 cut(s)	561, 845
BstUI	CGCG	3 cut(s)	12, 17, 22
BstV1I	GCAGC	2 cut(s)	831, 853
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	5, 683
BtsCI	GGATG	4 cut(s)	274, 280, 295, 507
BtsI	GCAGTG	1 cut(s)	854
BtsIMutI	CAGTG	3 cut(s)	208, 742, 854
CaiI	CAGNNNCTG	2 cut(s)	579, 844
CfoI	GCGC	2 cut(s)	14, 24
CseI	GACGC	2 cut(s)	18, 28
Csp6I	GTAC	1 cut(s)	690
CspCI	CAANNNNNGTGG	2 cut(s)	603, 638
CviAII	CATG	3 cut(s)	280, 353, 420
CviJI	RGCY	7 cut(s)	5, 284, 326, 491, 683, 825, 844
CviKI_1	RGCY	7 cut(s)	5, 284, 326, 491, 683, 825, 844
CviQI	GTAC	1 cut(s)	690
DdeI	CTNAG	2 cut(s)	285, 789
DpnI	GATC	5 cut(s)	76, 141, 216, 529, 673
DpnII	GATC	5 cut(s)	74, 139, 214, 527, 671
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	183, 788
EarI	CTCTTC	2 cut(s)	183, 788
Eco147I	AGGCCT	1 cut(s)	683
Eco31I	GGTCTC	1 cut(s)	807
Eco57I	CTGAAG	2 cut(s)	176, 798
Eco88I	CYCGRG	1 cut(s)	523
EcoT22I	ATGCAT	1 cut(s)	295
FaeI	CATG	3 cut(s)	283, 356, 423
FaiI	YATR	7 cut(s)	253, 255, 281, 354, 421, 459, 865
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	3 cut(s)	279, 352, 419
FauI	CCCGC	1 cut(s)	30
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	6 cut(s)	15, 25, 35, 60, 842, 845
FokI	GGATG	4 cut(s)	281, 287, 302, 514
Fsp4HI	GCNGC	6 cut(s)	15, 25, 35, 60, 842, 845
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	2 cut(s)	13, 23
GluI	GCNGC	6 cut(s)	15, 25, 35, 60, 842, 845
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	5, 683
HapII	CCGG	3 cut(s)	6, 72, 390
HgaI	GACGC	2 cut(s)	18, 28
HhaI	GCGC	2 cut(s)	14, 24
Hin1II	CATG	3 cut(s)	283, 356, 423
Hin6I	GCGC	2 cut(s)	12, 22
HinP1I	GCGC	2 cut(s)	12, 22
HincII	GTYRAC	2 cut(s)	54, 67
HindII	GTYRAC	2 cut(s)	54, 67
HinfI	GANTC	2 cut(s)	371, 796
HpaII	CCGG	3 cut(s)	6, 72, 390
HphI	GGTGA	3 cut(s)	134, 737, 743
Hpy166II	GTNNAC	2 cut(s)	54, 67
Hpy188I	TCNGA	7 cut(s)	88, 219, 298, 361, 780, 817, 855
Hpy188III	TCNNGA	5 cut(s)	212, 261, 320, 525, 547
Hpy8I	GTNNAC	2 cut(s)	54, 67
Hpy99I	CGWCG	2 cut(s)	22, 672
HpyAV	CCTTC	3 cut(s)	427, 673, 722
HpyCH4III	ACNGT	5 cut(s)	203, 349, 406, 478, 737
HpyCH4V	TGCA	9 cut(s)	182, 293, 304, 335, 344, 352, 563, 573, 847
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 68, 290, 332, 341
HpyF3I	CTNAG	2 cut(s)	285, 789
Hsp92II	CATG	3 cut(s)	283, 356, 423
HspAI	GCGC	2 cut(s)	12, 22
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	74, 139, 214, 527, 671
LmnI	GCTCC	4 cut(s)	227, 488, 598, 830
LpnPI	CCDG	8 cut(s)	19, 85, 146, 207, 246, 363, 403, 742
Lsp1109I	GCAGC	2 cut(s)	831, 853
LweI	GCATC	5 cut(s)	280, 302, 322, 508, 531
MaeI	CTAG	1 cut(s)	471
MaeIII	GTNAC	3 cut(s)	97, 385, 731
MalI	GATC	5 cut(s)	76, 141, 216, 529, 673
MboI	GATC	5 cut(s)	74, 139, 214, 527, 671
MluCI	AATT	3 cut(s)	336, 629, 641
MlyI	GAGTC	1 cut(s)	805
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	7 cut(s)	94, 259, 265, 280, 435, 532, 543
Mph1103I	ATGCAT	1 cut(s)	295
MseI	TTAA	4 cut(s)	444, 453, 480, 768
MspA1I	CMGCKG	1 cut(s)	844
MspI	CCGG	3 cut(s)	6, 72, 390
MspR9I	CCNGG	1 cut(s)	391
MvnI	CGCG	3 cut(s)	12, 17, 22
MwoI	GCNNNNNNNGC	5 cut(s)	11, 68, 290, 332, 341
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	5 cut(s)	74, 139, 214, 527, 671
NlaIII	CATG	3 cut(s)	283, 356, 423
NlaIV	GGNNCC	2 cut(s)	490, 826
NmuCI	GTSAC	2 cut(s)	97, 731
NsiI	ATGCAT	1 cut(s)	295
PceI	AGGCCT	1 cut(s)	683
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	6 cut(s)	16, 26, 36, 61, 843, 846
PleI	GAGTC	1 cut(s)	804
PpsI	GAGTC	1 cut(s)	804
PspN4I	GGNNCC	2 cut(s)	490, 826
PstI	CTGCAG	2 cut(s)	565, 849
PstNI	CAGNNNCTG	2 cut(s)	579, 844
PvuII	CAGCTG	1 cut(s)	844
RsaI	GTAC	1 cut(s)	691
RsaNI	GTAC	1 cut(s)	690
SaqAI	TTAA	4 cut(s)	444, 453, 480, 768
SatI	GCNGC	6 cut(s)	15, 25, 35, 60, 842, 845
Sau3AI	GATC	5 cut(s)	74, 139, 214, 527, 671
SchI	GAGTC	1 cut(s)	805
ScrFI	CCNGG	1 cut(s)	391
SetI	ASST	9 cut(s)	86, 226, 328, 487, 554, 571, 624, 733, 846
SfaNI	GCATC	5 cut(s)	280, 302, 322, 508, 531
SfcI	CTRYAG	2 cut(s)	561, 845
SmlI	CTYRAG	2 cut(s)	318, 545
SmoI	CTYRAG	2 cut(s)	318, 545
Sse9I	AATT	3 cut(s)	336, 629, 641
SseBI	AGGCCT	1 cut(s)	683
SsiI	CCGC	7 cut(s)	15, 25, 34, 37, 49, 59, 62
SspMI	CTAG	1 cut(s)	471
StuI	AGGCCT	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	389
TaaI	ACNGT	5 cut(s)	203, 349, 406, 478, 737
TaqI	TCGA	1 cut(s)	138
TaqII	GACCGA	1 cut(s)	789
TasI	AATT	3 cut(s)	336, 629, 641
TauI	GCSGC	4 cut(s)	17, 27, 37, 62
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	4 cut(s)	444, 453, 480, 768
Tru9I	TTAA	4 cut(s)	444, 453, 480, 768
TscAI	CASTG	3 cut(s)	208, 742, 854
TseFI	GTSAC	2 cut(s)	97, 731
TseI	GCWGC	2 cut(s)	841, 844
Tsp45I	GTSAC	2 cut(s)	97, 731
TspDTI	ATGAA	2 cut(s)	518, 756
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	3 cut(s)	208, 742, 854
XapI	RAATTY	2 cut(s)	629, 641
XspI	CTAG	1 cut(s)	471
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.