Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002982

Physical Location & Seq

Genomic Coordinates Forward (+)

41215961 .. 41219893

Gene Structure 3933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1292600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2466 bp

ATGGTCAACAGTGGTAACCGGAAAGGCCGAGGGGCATCCTTAGGAACAGGAAGTAAGAACAAGAGAAAATTAGCTGACCCTTCTCCAGAGAATGCAACTAAACCCGGTTCGCCCCTAACTGTAACCTCTCAGAGTGAATTACCTTCGGAGGAATGCCAAAAATTGAGTGACAATGAGTCGGCGGAGGCTGGGGTGGTTCAGCCCAAAGAAGAAGTGGAAGTGGGAGATTTTGAGTGTGCAGATTGGGATGACCCAATTGTGTGCCAGCTTGAAGAACTATTGCTGTCTTATTTGCAAGCAATTTTCCGGAGTGCAATTAAGCAGATAGCTGAACATGGGTACAGTGAGGAGGTTGCTGAAAGGGCTGTTTCGAGAGGTGGCCTTTACATTGGCGGTAAAGACCCTCTAGAAAATATTGTTAGTGATACTCTGGAGTTTCTTAAGACAGAGAAAGATATTGATGCTTCAAATGATCAGTTTGTTAATTTGCAGCACCTGGTGGAATACACAATGCTAGAAATGATCAGTGTGGTTAGGGAGGTCAGGCCATTGTTATCAGTTGCGGAAGCAATGTGGTGGCTGCTGATATGTGACTTGAACATTTTGCTAGCCTGTACATCGGAAGGAGATCCATTTAGTGCTCTTGGTTTTGAAGAATCCTCTTATTCTTCTTCTCCCCAATTAAGCTTAAAGGCAGACGAAGCAAATTCCTCAAAGCCACCACCTGCCCATGCTCAAAAGAATCCTCCTGAAACACTCAAATTTGGAAGTTTCCGTAAACATTCTCATGCACCCGAAGAGACATCTACCTCTGAAGAAAAGTCAGGAGCTCTAAAGGGGCGCACCAAGAAAGAATTAGCAGCACTTCGGAAGAAGTCCTACCATATGGATCGAAATTACAGCGCTTATGGGAAAAGAGGAGGCTTCAAATCGGGGAAAGTCACAATTGGTGGTTTTGTTCTGGAGAAGAGGCTAAAGCCTCCTTCTGAAATTCCCGGAGAACAAGCAACAGTTGCATCCTCAAAGTCAAGTGCCAAAGCTGGAGCCACCATCCCTTCTTCTGATGGAAGACATCATGCTTCAACCAAGATTTCATCTGCTTCGCTAGCAACAGGTGGCACAGTAACATTACCTATATCTTACTTGCAACCCGCAGATCGCAAGCTTTCCCAGAAGTCTTGTTTGGAAAAGAAATCTGGACCTAAGGCTAAGACCCCGGCATCCCCCAAGAATCATGATTGCTGTGCTGGCTTGCCATGTGATGACAAGTCTCTAGGAAAGGATATCCCAAGAGATGAGATTGATGAGCTGTTTTTGAAGGCAGTTCCTCAGCTGAAGGATCTTGTTCCTCTTGATTACTGTGCTGGCATCCCATATGATAAGTCCCTAGGAAAGTATGTCGTGCAAGATGAAAAGGATGAGCTGATTTTGAATCTAGTTCCTCGGCTGGAGGAGCTGCAAAATAAACTAGAAAGCTGGACTAATTGGGCCAATGAGAAGGTCATGCAGGTTTCGCATAGGCTTGGTAAGGAACGACCGGAACTTAAAATACTGAGGCAAGAGAAGGCAGAAGCAGAGAAATTTAAAAAGGAGAAACAAATGTTGGAGGAGAACACGGTGAAGAGAATCTCTGAGTTGGAGAATGCATTAAATAATGCAACTGACCAGGTTGAGAAAGCTACCTCTAAATTCTGTAGGCTTGAGTTGGAGAATTCCACTCTGAAAGAGGAATTGAGTGCTGCCAAAAGAATGGCTATAGAGTCGGTTGCACGTAACCAGGAAGCAATAGAGAGGGAGCAGAAGGCACTGAAAAGGGCCCAGGTATGGGAGGGGCTGAGGAGCGCATTGCAGGCAGAGCTTGAGACAGGAAAGAAGAAGGTGGCTCAACTGCAACAGGATTTAGGCAAGGCAAAAAATGTCCATCATCAAATCGAGGGAGAAGATAGATGGAAAAGGGAGAAGATAGAAAAGGAGAAAATACTTGCGCAGGCTGACTCCATAAGAAAAGAAAGAGAACAACGTGAAGCTTTGACAAAATTGGAGGAGGACGGGATCAAACTGAGCGCAGAATATGATATGCAGGAGTATATGGAAGACATTAGAAAAGTCGAGAGCAAGTTATCAGAACTTAAGTTGAAGTCCGACTCCTCAAGAATTGCAGCACTAAGAAGGGGAGCTGCCGGAAGCTTTGGAGGTTCCCCGTCGGACAGAAAAAGAGGGCTGGCAACAAAGGGAAACCAAAACGCTACAAGCTCCAAGAAGGTAAGGAATTCGCCGGATTTGAGACAGGACCGCGAGTGTGTGATGTGCCTATCTGAGGAGATGTCAGTGGTGTTCCTTCCGTGTGCACATCAGGTTGTTTGTGCAAATTGCAATGAGCTTCACAAGAAACAAGGAATGAAGGATTGCCCTTCTTGTAGGACCCCGATACAGCGGAGGATCAATGTGCAGCATGCTCATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

822

Amino Acids

91.16

Weight (kDa)

7.74

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIR2-like_helical	PF20235	98 - 206	2.2e-18	PIR2-like, helical domain
zf-C3HC4_3	PF13920	764 - 812	2.1e-12	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03365 AT1G03365 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000
fragaria_vesca	FvH4_2g24221 FvH4_2g24221 FvH4_2g24221
malus_domestica	MD03G1272000.v1.1 MD11G1292600.v1.1
prunus_persica	Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1
pyrus_communis	pycom03g21660 pycom11g25900
rosa_chinensis	RchiOBHm_Chr6g0292011
rosa_laevigata	RLG00000012070
rosa_multiflora	Rmu_co8265653.1_g000001 Rmu_co8382791.1_g000001 Rmu_sc0008666.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175490 Rroxscaffold_7G00178030
rosa_rugosa	Rorug06G0222500 Rorug06G0222600 Rorug06G0222700 Rorug06G0222800 Rorug06G0222900
rosa_samantha	Rh6AG336400 Rh6BG343700 Rh6CG350000 Rh6DG336700
rosa_wichuraiana	Rw6G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	733
Acc16I	TGCGCA	1 cut(s)	1986
Acc36I	ACCTGC	2 cut(s)	733, 1498
AccII	CGCG	1 cut(s)	2295
AccIII	TCCGGA	1 cut(s)	306
AciI	CCGC	6 cut(s)	182, 393, 563, 1152, 2293, 2434
AclWI	GGATC	5 cut(s)	623, 897, 1347, 2060, 2447
AcsI	RAATTY	7 cut(s)	706, 761, 990, 1580, 1688, 1711, 2269
AcuI	CTGAAG	2 cut(s)	834, 1355
AdeI	CACNNNGTG	1 cut(s)	499
AfaI	GTAC	2 cut(s)	341, 616
AfeI	AGCGCT	1 cut(s)	904
AfiI	CCNNNNNNNGG	3 cut(s)	1824, 1825, 2317
AflII	CTTAAG	2 cut(s)	440, 2129
AgsI	TTSAA	9 cut(s)	272, 468, 598, 653, 928, 1083, 1318, 1432, 2137
AhdI	GACNNNNNGTC	1 cut(s)	175
AjnI	CCWGG	4 cut(s)	495, 1665, 1776, 1818
AjuI	GAANNNNNNNTTGG	4 cut(s)	1166, 1198, 1586, 1618
Alw21I	GWGCWC	3 cut(s)	643, 832, 2350
Alw26I	GTCTC	4 cut(s)	794, 1275, 1856, 2278
Alw44I	GTGCAC	1 cut(s)	2346
AlwI	GGATC	5 cut(s)	623, 897, 1347, 2060, 2447
AlwNI	CAGNNNCTG	1 cut(s)	496
Aor13HI	TCCGGA	1 cut(s)	306
Aor51HI	AGCGCT	1 cut(s)	904
AoxI	GGCC	5 cut(s)	25, 379, 545, 1488, 1815
ApaI	GGGCCC	1 cut(s)	1819
ApaLI	GTGCAC	1 cut(s)	2346
ApeKI	GCWGC	8 cut(s)	490, 580, 860, 1456, 1739, 2159, 2177, 2449
ApoI	RAATTY	7 cut(s)	706, 761, 990, 1580, 1688, 1711, 2269
AspA2I	CCTAGG	1 cut(s)	1387
AspLEI	GCGC	5 cut(s)	843, 905, 1844, 1987, 2066
AspS9I	GGNCC	6 cut(s)	1199, 1488, 1815, 1816, 2290, 2421
AsuC2I	CCSGG	3 cut(s)	105, 996, 1217
AsuHPI	GGTGA	1 cut(s)	1630
AsuNHI	GCTAGC	2 cut(s)	607, 1105
AvaII	GGWCC	3 cut(s)	1199, 2290, 2421
AvrII	CCTAGG	1 cut(s)	1387
AxyI	CCTNAGG	2 cut(s)	40, 1203
BaeGI	GKGCMC	2 cut(s)	1819, 2350
BanII	GRGCYC	2 cut(s)	832, 1819
BarI	GAAGNNNNNNTAC	2 cut(s)	863, 895
BbsI	GAAGAC	2 cut(s)	1075, 2100
Bbv12I	GWGCWC	3 cut(s)	643, 832, 2350
BbvCI	CCTCAGC	2 cut(s)	1329, 1835
BbvI	GCAGC	8 cut(s)	502, 567, 872, 1443, 1726, 2164, 2171, 2461
BccI	CCATC	4 cut(s)	1058, 1058, 1929, 1941
BciT130I	CCWGG	4 cut(s)	497, 1667, 1778, 1820
BclI	TGATCA	2 cut(s)	472, 522
BcnI	CCSGG	3 cut(s)	105, 996, 1217
BcoDI	GTCTC	4 cut(s)	794, 1275, 1856, 2278
BfaI	CTAG	8 cut(s)	407, 515, 608, 1106, 1274, 1388, 1436, 1469
BfmI	CTRYAG	2 cut(s)	1693, 1755
BfoI	RGCGCY	1 cut(s)	906
BfrI	CTTAAG	2 cut(s)	440, 2129
BfuAI	ACCTGC	2 cut(s)	733, 1498
BisI	GCNGC	8 cut(s)	491, 581, 861, 1457, 1740, 2160, 2178, 2450
BlnI	CCTAGG	1 cut(s)	1387
BlsI	GCNGC	8 cut(s)	492, 582, 862, 1458, 1741, 2161, 2179, 2451
Bme1390I	CCNGG	7 cut(s)	105, 497, 996, 1217, 1667, 1778, 1820
Bme18I	GGWCC	3 cut(s)	1199, 2290, 2421
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmgT120I	GGNCC	6 cut(s)	1199, 1488, 1815, 1816, 2290, 2421
BmiI	GGNNCC	4 cut(s)	1045, 1817, 2197, 2423
BmrFI	CCNGG	7 cut(s)	105, 497, 996, 1217, 1667, 1778, 1820
BmsI	GCATC	5 cut(s)	44, 451, 1025, 1229, 1377
BmtI	GCTAGC	2 cut(s)	611, 1109
BpiI	GAAGAC	2 cut(s)	1075, 2100
BpmI	CTGGAG	5 cut(s)	69, 452, 983, 1062, 1469
Bpu10I	CCTNAGC	2 cut(s)	1329, 1835
BpuEI	CTTGAG	3 cut(s)	1721, 1880, 2134
BpuMI	CCSGG	3 cut(s)	105, 996, 1217
BsaAI	YACGTR	1 cut(s)	1772
BsaJI	CCNNGG	5 cut(s)	28, 1215, 1387, 1442, 1818
BsaWI	WCCGGW	3 cut(s)	18, 306, 1537
Bsc4I	CCNNNNNNNGG	3 cut(s)	1824, 1825, 2317
Bse21I	CCTNAGG	2 cut(s)	40, 1203
Bse3DI	GCAATG	3 cut(s)	576, 1844, 2380
BseAI	TCCGGA	1 cut(s)	306
BseBI	CCWGG	4 cut(s)	497, 1667, 1778, 1820
BseDI	CCNNGG	5 cut(s)	28, 1215, 1387, 1442, 1818
BseGI	GGATG	8 cut(s)	35, 253, 1016, 1050, 1220, 1368, 1423, 2458
BseLI	CCNNNNNNNGG	3 cut(s)	1824, 1825, 2317
BseMI	GCAATG	3 cut(s)	576, 1844, 2380
BseMII	CTCAG	7 cut(s)	143, 1343, 1544, 1623, 1826, 2051, 2307
BseRI	GAGGAG	8 cut(s)	362, 933, 1466, 1622, 1852, 2057, 2137, 2333
BseSI	GKGCMC	2 cut(s)	1819, 2350
BseXI	GCAGC	8 cut(s)	502, 567, 872, 1443, 1726, 2164, 2171, 2461
BseYI	CCCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	2295
Bsh1285I	CGRYCG	1 cut(s)	1538
BshFI	GGCC	5 cut(s)	27, 381, 547, 1490, 1817
BsiEI	CGRYCG	1 cut(s)	1538
BsiHKAI	GWGCWC	3 cut(s)	643, 832, 2350
BsiSI	CCGG	8 cut(s)	19, 105, 307, 996, 1217, 1538, 2181, 2276
BslFI	GGGAC	1 cut(s)	1369
BslI	CCNNNNNNNGG	3 cut(s)	1824, 1825, 2317
BsmAI	GTCTC	4 cut(s)	794, 1275, 1856, 2278
BsmFI	GGGAC	1 cut(s)	1369
BsmI	GAATGC	3 cut(s)	97, 158, 1648
BsnI	GGCC	5 cut(s)	27, 381, 547, 1490, 1817
Bsp120I	GGGCCC	1 cut(s)	1815
Bsp1286I	GDGCHC	4 cut(s)	643, 832, 1819, 2350
Bsp13I	TCCGGA	1 cut(s)	306
Bsp1407I	TGTACA	1 cut(s)	614
Bsp143I	GATC	8 cut(s)	472, 522, 628, 889, 1156, 1339, 2052, 2439
BspACI	CCGC	6 cut(s)	182, 393, 563, 1152, 2293, 2434
BspANI	GGCC	5 cut(s)	27, 381, 547, 1490, 1817
BspCNI	CTCAG	7 cut(s)	142, 1342, 1545, 1624, 1827, 2052, 2308
BspEI	TCCGGA	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	2295
BspHI	TCATGA	1 cut(s)	1234
BspLI	GGNNCC	4 cut(s)	1045, 1817, 2197, 2423
BspMI	ACCTGC	2 cut(s)	733, 1498
BspOI	GCTAGC	2 cut(s)	611, 1109
BspPI	GGATC	5 cut(s)	623, 897, 1347, 2060, 2447
BspTI	CTTAAG	2 cut(s)	440, 2129
BsrDI	GCAATG	3 cut(s)	576, 1844, 2380
BsrGI	TGTACA	1 cut(s)	614
BssECI	CCNNGG	5 cut(s)	28, 1215, 1387, 1442, 1818
BssMI	GATC	8 cut(s)	472, 522, 628, 889, 1156, 1339, 2052, 2439
BssT1I	CCWWGG	1 cut(s)	1387
Bst2UI	CCWGG	4 cut(s)	497, 1667, 1778, 1820
Bst4CI	ACNGT	7 cut(s)	11, 121, 344, 1012, 1123, 1361, 1618
Bst6I	CTCTTC	3 cut(s)	792, 962, 1616
BstAFI	CTTAAG	2 cut(s)	440, 2129
BstAPI	GCANNNNNTGC	1 cut(s)	1013
BstAUI	TGTACA	1 cut(s)	614
BstBAI	YACGTR	1 cut(s)	1772
BstEII	GGTNACC	1 cut(s)	14
BstENI	CCTNNNNNAGG	1 cut(s)	2315
BstF5I	GGATG	8 cut(s)	35, 253, 1016, 1050, 1220, 1368, 1423, 2458
BstFNI	CGCG	1 cut(s)	2295
BstH2I	RGCGCY	1 cut(s)	906
BstHHI	GCGC	5 cut(s)	843, 905, 1844, 1987, 2066
BstKTI	GATC	8 cut(s)	475, 525, 631, 892, 1159, 1342, 2055, 2442
BstMAI	GTCTC	4 cut(s)	794, 1275, 1856, 2278
BstMBI	GATC	8 cut(s)	472, 522, 628, 889, 1156, 1339, 2052, 2439
BstMCI	CGRYCG	1 cut(s)	1538
BstMWI	GCNNNNNNNGC	9 cut(s)	362, 701, 1013, 1106, 1248, 1453, 1513, 1850, 1855
BstNI	CCWGG	4 cut(s)	497, 1667, 1778, 1820
BstNSI	RCATGY	1 cut(s)	2456
BstPI	GGTNACC	1 cut(s)	14
BstSCI	CCNGG	7 cut(s)	103, 495, 994, 1215, 1665, 1776, 1818
BstSFI	CTRYAG	2 cut(s)	1693, 1755
BstSLI	GKGCMC	2 cut(s)	1819, 2350
BstUI	CGCG	1 cut(s)	2295
BstV1I	GCAGC	8 cut(s)	502, 567, 872, 1443, 1726, 2164, 2171, 2461
BstV2I	GAAGAC	2 cut(s)	1075, 2100
BstX2I	RGATCY	2 cut(s)	628, 1339
BstXI	CCANNNNNNTGG	1 cut(s)	1750
BstYI	RGATCY	2 cut(s)	628, 1339
Bsu36I	CCTNAGG	2 cut(s)	40, 1203
BsuRI	GGCC	5 cut(s)	27, 381, 547, 1490, 1817
BtsCI	GGATG	8 cut(s)	35, 253, 1016, 1050, 1220, 1368, 1423, 2458
BtsIMutI	CAGTG	5 cut(s)	16, 349, 532, 1805, 2334
BveI	ACCTGC	2 cut(s)	733, 1498
CaiI	CAGNNNCTG	1 cut(s)	496
CciI	TCATGA	1 cut(s)	1234
CfoI	GCGC	5 cut(s)	843, 905, 1844, 1987, 2066
Cfr13I	GGNCC	6 cut(s)	1199, 1488, 1815, 1816, 2290, 2421
CsiI	ACCWGGT	2 cut(s)	495, 1665
Csp6I	GTAC	2 cut(s)	340, 615
CviAII	CATG	8 cut(s)	335, 731, 788, 1076, 1235, 1257, 1504, 2453
CviQI	GTAC	2 cut(s)	340, 615
DpnI	GATC	8 cut(s)	474, 524, 630, 891, 1158, 1341, 2054, 2441
DpnII	GATC	8 cut(s)	472, 522, 628, 889, 1156, 1339, 2052, 2439
DraI	TTTAAA	1 cut(s)	1585
DraIII	CACNNNGTG	1 cut(s)	499
DriI	GACNNNNNGTC	1 cut(s)	175
Eam1104I	CTCTTC	3 cut(s)	792, 962, 1616
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EarI	CTCTTC	3 cut(s)	792, 962, 1616
EciI	GGCGGA	1 cut(s)	197
Ecl136II	GAGCTC	1 cut(s)	830
Eco130I	CCWWGG	1 cut(s)	1387
Eco24I	GRGCYC	2 cut(s)	832, 1819
Eco32I	GATATC	1 cut(s)	1285
Eco47I	GGWCC	3 cut(s)	1199, 2290, 2421
Eco47III	AGCGCT	1 cut(s)	904
Eco53kI	GAGCTC	1 cut(s)	830
Eco57I	CTGAAG	2 cut(s)	834, 1355
Eco81I	CCTNAGG	2 cut(s)	40, 1203
Eco91I	GGTNACC	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	830
EcoNI	CCTNNNNNAGG	1 cut(s)	2315
EcoO109I	RGGNCCY	2 cut(s)	1815, 2421
EcoO65I	GGTNACC	1 cut(s)	14
EcoRI	GAATTC	2 cut(s)	1711, 2269
EcoRII	CCWGG	4 cut(s)	495, 1665, 1776, 1818
EcoRV	GATATC	1 cut(s)	1285
EcoT14I	CCWWGG	1 cut(s)	1387
EcoT22I	ATGCAT	1 cut(s)	1648
EcoT38I	GRGCYC	2 cut(s)	832, 1819
ErhI	CCWWGG	1 cut(s)	1387
FaeI	CATG	8 cut(s)	338, 734, 791, 1079, 1238, 1260, 1507, 2456
FaqI	GGGAC	1 cut(s)	1369
FatI	CATG	8 cut(s)	334, 730, 787, 1075, 1234, 1256, 1503, 2452
FauI	CCCGC	1 cut(s)	1159
FauNDI	CATATG	2 cut(s)	885, 1375
FbaI	TGATCA	2 cut(s)	472, 522
Fnu4HI	GCNGC	8 cut(s)	491, 581, 861, 1457, 1740, 2160, 2178, 2450
FokI	GGATG	8 cut(s)	22, 260, 1003, 1037, 1207, 1355, 1430, 2445
FriOI	GRGCYC	2 cut(s)	832, 1819
Fsp4HI	GCNGC	8 cut(s)	491, 581, 861, 1457, 1740, 2160, 2178, 2450
FspBI	CTAG	8 cut(s)	407, 515, 608, 1106, 1274, 1388, 1436, 1469
FspI	TGCGCA	1 cut(s)	1986
GlaI	GCGC	5 cut(s)	842, 904, 1843, 1986, 2065
GluI	GCNGC	8 cut(s)	491, 581, 861, 1457, 1740, 2160, 2178, 2450
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	5 cut(s)	69, 452, 983, 1062, 1469
HaeII	RGCGCY	1 cut(s)	906
HaeIII	GGCC	5 cut(s)	27, 381, 547, 1490, 1817
HapII	CCGG	8 cut(s)	19, 105, 307, 996, 1217, 1538, 2181, 2276
HhaI	GCGC	5 cut(s)	843, 905, 1844, 1987, 2066
Hin1II	CATG	8 cut(s)	338, 734, 791, 1079, 1238, 1260, 1507, 2456
Hin6I	GCGC	5 cut(s)	841, 903, 1842, 1985, 2064
HinP1I	GCGC	5 cut(s)	841, 903, 1842, 1985, 2064
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	4 cut(s)	685, 1163, 2025, 2185
HinfI	GANTC	9 cut(s)	176, 656, 742, 1231, 1432, 1626, 1760, 1994, 2144
HpaII	CCGG	8 cut(s)	19, 105, 307, 996, 1217, 1538, 2181, 2276
HphI	GGTGA	1 cut(s)	1630
Hpy166II	GTNNAC	3 cut(s)	7, 779, 2348
Hpy8I	GTNNAC	3 cut(s)	7, 779, 2348
Hpy99I	CGWCG	1 cut(s)	2206
HpyCH4III	ACNGT	7 cut(s)	11, 121, 344, 1012, 1123, 1361, 1618
HpyCH4IV	ACGT	2 cut(s)	1771, 2020
HpyF10VI	GCNNNNNNNGC	9 cut(s)	362, 701, 1013, 1106, 1248, 1453, 1513, 1850, 1855
HpySE526I	ACGT	2 cut(s)	1771, 2020
Hsp92II	CATG	8 cut(s)	338, 734, 791, 1079, 1238, 1260, 1507, 2456
HspAI	GCGC	5 cut(s)	841, 903, 1842, 1985, 2064
Kpn2I	TCCGGA	1 cut(s)	306
Ksp22I	TGATCA	2 cut(s)	472, 522
Kzo9I	GATC	8 cut(s)	472, 522, 628, 889, 1156, 1339, 2052, 2439
LmnI	GCTCC	7 cut(s)	827, 1043, 1453, 1795, 1839, 2174, 2258
Lsp1109I	GCAGC	8 cut(s)	502, 567, 872, 1443, 1726, 2164, 2171, 2461
LweI	GCATC	5 cut(s)	44, 451, 1025, 1229, 1377
MabI	ACCWGGT	2 cut(s)	495, 1665
MaeI	CTAG	8 cut(s)	407, 515, 608, 1106, 1274, 1388, 1436, 1469
MaeII	ACGT	2 cut(s)	1771, 2020
MaeIII	GTNAC	7 cut(s)	14, 121, 167, 590, 940, 1123, 1772
MalI	GATC	8 cut(s)	474, 524, 630, 891, 1158, 1341, 2054, 2441
MboI	GATC	8 cut(s)	472, 522, 628, 889, 1156, 1339, 2052, 2439
MfeI	CAATTG	2 cut(s)	255, 945
MflI	RGATCY	2 cut(s)	628, 1339
MhlI	GDGCHC	4 cut(s)	643, 832, 1819, 2350
MlyI	GAGTC	4 cut(s)	185, 1769, 1988, 2138
MmeI	TCCRAC	5 cut(s)	1584, 1617, 1686, 2166, 2184
Mph1103I	ATGCAT	1 cut(s)	1648
MroI	TCCGGA	1 cut(s)	306
MseI	TTAA	9 cut(s)	318, 441, 483, 683, 689, 1545, 1584, 1649, 2130
MslI	CAYNNNNRTG	1 cut(s)	786
MspA1I	CMGCKG	2 cut(s)	1333, 2434
MspCI	CTTAAG	2 cut(s)	440, 2129
MspI	CCGG	8 cut(s)	19, 105, 307, 996, 1217, 1538, 2181, 2276
MspR9I	CCNGG	7 cut(s)	105, 497, 996, 1217, 1667, 1778, 1820
MunI	CAATTG	2 cut(s)	255, 945
Mva1269I	GAATGC	3 cut(s)	97, 158, 1648
MvaI	CCWGG	4 cut(s)	497, 1667, 1778, 1820
MvnI	CGCG	1 cut(s)	2295
MwoI	GCNNNNNNNGC	9 cut(s)	362, 701, 1013, 1106, 1248, 1453, 1513, 1850, 1855
NciI	CCSGG	3 cut(s)	105, 996, 1217
NdeI	CATATG	2 cut(s)	885, 1375
NdeII	GATC	8 cut(s)	472, 522, 628, 889, 1156, 1339, 2052, 2439
NheI	GCTAGC	2 cut(s)	607, 1105
NlaIII	CATG	8 cut(s)	338, 734, 791, 1079, 1238, 1260, 1507, 2456
NlaIV	GGNNCC	4 cut(s)	1045, 1817, 2197, 2423
NmeAIII	GCCGAG	2 cut(s)	53, 1423
NmuCI	GTSAC	3 cut(s)	167, 590, 940
NsbI	TGCGCA	1 cut(s)	1986
NsiI	ATGCAT	1 cut(s)	1648
NspI	RCATGY	1 cut(s)	2456
PaeI	GCATGC	1 cut(s)	2456
PagI	TCATGA	1 cut(s)	1234
PaqCI	CACCTGC	1 cut(s)	733
PctI	GAATGC	3 cut(s)	97, 158, 1648
PfeI	GAWTC	5 cut(s)	656, 742, 1231, 1432, 1626
PfoI	TCCNGGA	1 cut(s)	994
PkrI	GCNGC	8 cut(s)	492, 582, 862, 1458, 1741, 2161, 2179, 2451
PleI	GAGTC	4 cut(s)	184, 1768, 1988, 2138
PpsI	GAGTC	4 cut(s)	184, 1768, 1988, 2138
Ppu21I	YACGTR	1 cut(s)	1772
PpuMI	RGGWCCY	1 cut(s)	2421
Psp124BI	GAGCTC	1 cut(s)	832
Psp5II	RGGWCCY	1 cut(s)	2421
Psp6I	CCWGG	4 cut(s)	495, 1665, 1776, 1818
PspEI	GGTNACC	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	4 cut(s)	495, 1665, 1776, 1818
PspN4I	GGNNCC	4 cut(s)	1045, 1817, 2197, 2423
PspOMI	GGGCCC	1 cut(s)	1815
PspPI	GGNCC	6 cut(s)	1199, 1488, 1815, 1816, 2290, 2421
PspPPI	RGGWCCY	1 cut(s)	2421
PsrI	GAACNNNNNNTAC	2 cut(s)	1533, 1565
PstNI	CAGNNNCTG	1 cut(s)	496
PsuI	RGATCY	2 cut(s)	628, 1339
PvuII	CAGCTG	1 cut(s)	1333
RsaI	GTAC	2 cut(s)	341, 616
RsaNI	GTAC	2 cut(s)	340, 615
RseI	CAYNNNNRTG	1 cut(s)	786
SacI	GAGCTC	1 cut(s)	832
SaqAI	TTAA	9 cut(s)	318, 441, 483, 683, 689, 1545, 1584, 1649, 2130
SatI	GCNGC	8 cut(s)	491, 581, 861, 1457, 1740, 2160, 2178, 2450
Sau3AI	GATC	8 cut(s)	472, 522, 628, 889, 1156, 1339, 2052, 2439
Sau96I	GGNCC	6 cut(s)	1199, 1488, 1815, 1816, 2290, 2421
SchI	GAGTC	4 cut(s)	185, 1769, 1988, 2138
ScrFI	CCNGG	7 cut(s)	105, 497, 996, 1217, 1667, 1778, 1820
SduI	GDGCHC	4 cut(s)	643, 832, 1819, 2350
SexAI	ACCWGGT	2 cut(s)	495, 1665
SfaNI	GCATC	5 cut(s)	44, 451, 1025, 1229, 1377
SfcI	CTRYAG	2 cut(s)	1693, 1755
SinI	GGWCC	3 cut(s)	1199, 2290, 2421
SmiMI	CAYNNNNRTG	1 cut(s)	786
SmlI	CTYRAG	5 cut(s)	440, 1700, 1859, 2129, 2149
SmoI	CTYRAG	5 cut(s)	440, 1700, 1859, 2129, 2149
SphI	GCATGC	1 cut(s)	2456
SsiI	CCGC	6 cut(s)	182, 393, 563, 1152, 2293, 2434
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	8 cut(s)	407, 515, 608, 1106, 1274, 1388, 1436, 1469
SstI	GAGCTC	1 cut(s)	832
StyD4I	CCNGG	7 cut(s)	103, 495, 994, 1215, 1665, 1776, 1818
StyI	CCWWGG	1 cut(s)	1387
TaaI	ACNGT	7 cut(s)	11, 121, 344, 1012, 1123, 1361, 1618
TaiI	ACGT	2 cut(s)	1774, 2023
TaqI	TCGA	4 cut(s)	371, 892, 1932, 2109
TatI	WGTACW	1 cut(s)	614
TfiI	GAWTC	5 cut(s)	656, 742, 1231, 1432, 1626
Tru1I	TTAA	9 cut(s)	318, 441, 483, 683, 689, 1545, 1584, 1649, 2130
Tru9I	TTAA	9 cut(s)	318, 441, 483, 683, 689, 1545, 1584, 1649, 2130
TscAI	CASTG	5 cut(s)	16, 349, 532, 1812, 2334
TseFI	GTSAC	3 cut(s)	167, 590, 940
TseI	GCWGC	8 cut(s)	490, 580, 860, 1456, 1739, 2159, 2177, 2449
Tsp45I	GTSAC	3 cut(s)	167, 590, 940
TspDTI	ATGAA	3 cut(s)	1083, 1425, 2414
TspGWI	ACGGA	2 cut(s)	764, 2331
TspRI	CASTG	5 cut(s)	16, 349, 532, 1812, 2334
Vha464I	CTTAAG	2 cut(s)	440, 2129
VneI	GTGCAC	1 cut(s)	2346
VpaK11BI	GGWCC	3 cut(s)	1199, 2290, 2421
XagI	CCTNNNNNAGG	1 cut(s)	2315
XapI	RAATTY	7 cut(s)	706, 761, 990, 1580, 1688, 1711, 2269
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	1 cut(s)	2456
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmaJI	CCTAGG	1 cut(s)	1387
XspI	CTAG	8 cut(s)	407, 515, 608, 1106, 1274, 1388, 1436, 1469
Zsp2I	ATGCAT	1 cut(s)	1648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.