Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002982

Physical Location & Seq

Genomic Coordinates Forward (+)

35597019 .. 35598034

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0222600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAATAGATCGAGAAGTGATTCGACTGCAATCAACATTCAGCCAGAGTCATCATCGAGAAGTAAGCAGGTTGCTGCCAAAGGAGAAGCATATCATGTGATGAGGGTACTAGCTGCTGATCCCAAGCATGATCATGACAAGGGAGCTGGGATGAAGAAGGGGGTTGCTGTGCCACAGCATGCTGCTCTAGGCGCCACAGTCACCATGGCATCCAGCGAGCAAACTCTTCCTTTCTTCACACAGTTCTTTCAATTTCAAGCCGGTTATGACGACTTGCCCACTTTCACGTTTTTCGTGATAGCAATGGCCATAGTGAGTGGCTACCTGGTCCTCTCTTTGCCCTTCTCCATAGTAACCATTATCCGTCCACTATTAGTTGCTCCGAGGCTTCTCTTGCTTATTTTCGACACTCTAGCGCTTACTCTGAACACTTCAAGTGCCGCCGCTGCGGCTGCCATAGTTTACTTGGCCCACAATGGGAACTCCGATGCAAATTGGCTTGCTATCTGCCAACAGTTCGGTGATTTCTGCCGGCAATCTAGCGGGGCTGTGGTTTCAGCATTCGTTGCAGTTGTTATCTTCACTGTGTTGATTATGCTGTCTGCTATTGCCCTCCGAAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

208

Amino Acids

22.28

Weight (kDa)

9.03

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	61 - 192	5.5e-39	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03365 AT1G03365 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000
fragaria_vesca	FvH4_2g24221 FvH4_2g24221 FvH4_2g24221
malus_domestica	MD03G1272000.v1.1 MD11G1292600.v1.1
prunus_persica	Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1
pyrus_communis	pycom03g21660 pycom11g25900
rosa_chinensis	RchiOBHm_Chr6g0292011
rosa_laevigata	RLG00000012070
rosa_multiflora	Rmu_co8265653.1_g000001 Rmu_co8382791.1_g000001 Rmu_sc0008666.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175490 Rroxscaffold_7G00178030
rosa_rugosa	Rorug06G0222500 Rorug06G0222600 Rorug06G0222700 Rorug06G0222800 Rorug06G0222900
rosa_samantha	Rh6AG336400 Rh6BG343700 Rh6CG350000 Rh6DG336700
rosa_wichuraiana	Rw6G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	58
AccB1I	GGYRCC	1 cut(s)	191
AciI	CCGC	4 cut(s)	441, 444, 449, 543
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	108
AfeI	AGCGCT	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	477
AgsI	TTSAA	3 cut(s)	251, 257, 435
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	3 cut(s)	113, 146, 623
AluI	AGCT	3 cut(s)	113, 146, 623
AlwI	GGATC	1 cut(s)	113
Aor51HI	AGCGCT	1 cut(s)	417
AoxI	GGCC	2 cut(s)	306, 468
ApeKI	GCWGC	5 cut(s)	74, 113, 182, 446, 452
Asp700I	GAANNNNTTC	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	194, 418
AspS9I	GGNCC	2 cut(s)	328, 469
AsuHPI	GGTGA	2 cut(s)	193, 533
AvaII	GGWCC	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	191
BbvI	GCAGC	5 cut(s)	61, 100, 169, 433, 439
BciT130I	CCWGG	1 cut(s)	326
BclI	TGATCA	1 cut(s)	130
BfaI	CTAG	4 cut(s)	110, 188, 413, 540
BfoI	RGCGCY	2 cut(s)	195, 419
BfuAI	ACCTGC	1 cut(s)	58
BglI	GCCNNNNNGGC	1 cut(s)	449
BisI	GCNGC	8 cut(s)	75, 114, 183, 441, 444, 447, 450, 453
BlsI	GCNGC	8 cut(s)	76, 115, 184, 442, 445, 448, 451, 454
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	328, 469
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	2 cut(s)	218, 478
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	204, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse118I	RCCGGY	2 cut(s)	260, 531
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	204, 383
BseGI	GGATG	2 cut(s)	156, 209
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMI	GCAATG	1 cut(s)	309
BseXI	GCAGC	5 cut(s)	61, 100, 169, 433, 439
BseYI	CCCAGC	1 cut(s)	146
BshFI	GGCC	2 cut(s)	308, 470
BshNI	GGYRCC	1 cut(s)	191
BsiSI	CCGG	2 cut(s)	261, 532
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	2 cut(s)	308, 470
Bsp143I	GATC	3 cut(s)	8, 118, 130
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	4 cut(s)	441, 444, 449, 543
BspANI	GGCC	2 cut(s)	308, 470
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	113
BspQI	GCTCTTC	1 cut(s)	613
BspT107I	GGYRCC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	2 cut(s)	260, 531
BssAI	RCCGGY	2 cut(s)	260, 531
BssECI	CCNNGG	2 cut(s)	204, 383
BssMI	GATC	3 cut(s)	8, 118, 130
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	4 cut(s)	199, 243, 516, 586
Bst6I	CTCTTC	2 cut(s)	231, 613
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstC8I	GCNNGC	4 cut(s)	180, 218, 501, 533
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	156, 209
BstH2I	RGCGCY	2 cut(s)	195, 419
BstHHI	GCGC	2 cut(s)	194, 418
BstKTI	GATC	3 cut(s)	11, 121, 133
BstMBI	GATC	3 cut(s)	8, 118, 130
BstMWI	GCNNNNNNNGC	6 cut(s)	191, 394, 446, 449, 452, 566
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	324
BstV1I	GCAGC	5 cut(s)	61, 100, 169, 433, 439
BsuRI	GGCC	2 cut(s)	308, 470
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	156, 209
BtsIMutI	CAGTG	1 cut(s)	582
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	4 cut(s)	180, 218, 501, 533
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	2 cut(s)	194, 418
Cfr10I	RCCGGY	2 cut(s)	260, 531
Cfr13I	GGNCC	2 cut(s)	328, 469
CsiI	ACCWGGT	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	5 cut(s)	95, 128, 134, 179, 205
CviQI	GTAC	1 cut(s)	107
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	3 cut(s)	10, 120, 132
DpnII	GATC	3 cut(s)	8, 118, 130
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	2 cut(s)	231, 613
EarI	CTCTTC	2 cut(s)	231, 613
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	328
Eco47III	AGCGCT	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	204
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	5 cut(s)	98, 131, 137, 182, 208
FatI	CATG	5 cut(s)	94, 127, 133, 178, 204
FauI	CCCGC	1 cut(s)	536
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	8 cut(s)	75, 114, 183, 441, 444, 447, 450, 453
FokI	GGATG	2 cut(s)	163, 196
Fsp4HI	GCNGC	8 cut(s)	75, 114, 183, 441, 444, 447, 450, 453
FspBI	CTAG	4 cut(s)	110, 188, 413, 540
GlaI	GCGC	2 cut(s)	193, 417
GluI	GCNGC	8 cut(s)	75, 114, 183, 441, 444, 447, 450, 453
GsaI	CCCAGC	1 cut(s)	150
HaeII	RGCGCY	2 cut(s)	195, 419
HaeIII	GGCC	2 cut(s)	308, 470
HapII	CCGG	2 cut(s)	261, 532
HhaI	GCGC	2 cut(s)	194, 418
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	5 cut(s)	98, 131, 137, 182, 208
Hin6I	GCGC	2 cut(s)	192, 416
HinP1I	GCGC	2 cut(s)	192, 416
HinfI	GANTC	2 cut(s)	20, 47
HpaII	CCGG	2 cut(s)	261, 532
HphI	GGTGA	2 cut(s)	193, 533
Hpy166II	GTNNAC	2 cut(s)	368, 463
Hpy188I	TCNGA	4 cut(s)	384, 426, 487, 617
Hpy188III	TCNNGA	4 cut(s)	12, 57, 134, 295
Hpy8I	GTNNAC	2 cut(s)	368, 463
HpyAV	CCTTC	2 cut(s)	151, 352
HpyCH4III	ACNGT	4 cut(s)	199, 243, 516, 586
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	3 cut(s)	29, 491, 569
HpyF10VI	GCNNNNNNNGC	6 cut(s)	191, 394, 446, 449, 452, 566
HpySE526I	ACGT	1 cut(s)	287
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	5 cut(s)	98, 131, 137, 182, 208
HspAI	GCGC	2 cut(s)	192, 416
KasI	GGCGCC	1 cut(s)	191
KroI	GCCGGC	1 cut(s)	531
KroNI	GCCGGC	1 cut(s)	533
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	8, 118, 130
LguI	GCTCTTC	1 cut(s)	613
LmnI	GCTCC	2 cut(s)	143, 385
LpnPI	CCDG	8 cut(s)	53, 57, 132, 226, 274, 311, 338, 545
Lsp1109I	GCAGC	5 cut(s)	61, 100, 169, 433, 439
LweI	GCATC	2 cut(s)	218, 478
MabI	ACCWGGT	1 cut(s)	324
MaeI	CTAG	4 cut(s)	110, 188, 413, 540
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	2 cut(s)	199, 352
MalI	GATC	3 cut(s)	10, 120, 132
MboI	GATC	3 cut(s)	8, 118, 130
MboII	GAAGA	4 cut(s)	166, 218, 226, 571
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	2 cut(s)	251, 493
MluNI	TGGCCA	1 cut(s)	308
Mly113I	GGCGCC	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	4 cut(s)	96, 341, 378, 623
Mox20I	TGGCCA	1 cut(s)	308
MroNI	GCCGGC	1 cut(s)	531
MroXI	GAANNNNTTC	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	1 cut(s)	625
MslI	CAYNNNNRTG	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	2 cut(s)	261, 532
MspR9I	CCNGG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	6 cut(s)	191, 394, 446, 449, 452, 566
NaeI	GCCGGC	1 cut(s)	533
NarI	GGCGCC	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	3 cut(s)	8, 118, 130
NgoMIV	GCCGGC	1 cut(s)	531
NlaIII	CATG	5 cut(s)	98, 131, 137, 182, 208
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	182
PagI	TCATGA	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	613
PctI	GAATGC	1 cut(s)	560
PdiI	GCCGGC	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	8 cut(s)	76, 115, 184, 442, 445, 448, 451, 454
PleI	GAGTC	1 cut(s)	55
PluTI	GGCGCC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	328, 469
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	613
SaqAI	TTAA	1 cut(s)	625
SatI	GCNGC	8 cut(s)	75, 114, 183, 441, 444, 447, 450, 453
Sau3AI	GATC	3 cut(s)	8, 118, 130
Sau96I	GGNCC	2 cut(s)	328, 469
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	326
SetI	ASST	6 cut(s)	72, 115, 148, 290, 327, 625
SexAI	ACCWGGT	1 cut(s)	324
SfaNI	GCATC	2 cut(s)	218, 478
SfoI	GGCGCC	1 cut(s)	193
SinI	GGWCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	132
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	2 cut(s)	251, 493
SsiI	CCGC	4 cut(s)	441, 444, 449, 543
SspDI	GGCGCC	1 cut(s)	191
SspMI	CTAG	4 cut(s)	110, 188, 413, 540
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	4 cut(s)	199, 243, 516, 586
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	4 cut(s)	11, 23, 56, 405
TasI	AATT	2 cut(s)	251, 493
TauI	GCSGC	3 cut(s)	443, 446, 452
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	625
Tru9I	TTAA	1 cut(s)	625
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	5 cut(s)	74, 113, 182, 446, 452
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	17, 167
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	328
XceI	RCATGY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	2 cut(s)	202, 463
XmnI	GAANNNNTTC	1 cut(s)	19
XspI	CTAG	4 cut(s)	110, 188, 413, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.