Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002982

Physical Location & Seq

Genomic Coordinates Forward (+)

54003928 .. 54006954

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG350000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2634 bp

ATGTGTGAACTTTTTGAGATATTGCACCTTTCCCTTTTGACAAGGTTTTATTTTGTTGTTTTAATAAAGTTCACATTTCCATCATTTTTTGTTTTGGGTTTTCTAGTGTTTATTGATATAGATTGGAGTGGTGAAGATACTGTGGCGTTTGTTCTTGTTGTTTATAGGATAAAGAAAATGGTCAATAGTGGTGGTACTGGCAGCAACCAAGGGATGTCGTTAGAGAAGACTAAACCAGTAGCTGTTTGTTCTATAAAGAAAAAGCTAGCTGAAGCTGCTGTAGTGAGTATAAGTAACCATTTGAGTGAAGCACCTCCGGAGATATCTAGAAAACGGAGTGAACCTGAGCCCGTAGAGGCTACGGTGGTTCAGCCTAAGGAGGAAGCGGAAACGGGAGCCGTTGAAGAAGGTAGAGATTGGGATGATCCCATTGCATGCCAGCTTGAAGAACTATTGTTGTCTTATTTGCAAGCAATTTTCCAGAGTGCAATCAAGCGGATTACTGAATGTGGGTACAGTGAGGAGGTTGCTGTGAAGGCTGTTTCTAGAGGCGGCCTTTACGTGGGCGGTAAAGACTCTGTATTGAACATTGTAAATGATACTCTGGAATTTCTCAAGGGAGGGAAGGATACTGATGCTTCAAGAGAAAATGAGTTTGATAATTTACAGCACGTGGTGGAGTACACAATGCTAGAAATGATCAGTGTGCTTAGGGAGGTCAGGCCGTCCTTATCAGTTGCAGAAGCAATGTGGTGGTTACTGATATGTGACCTAAACATTTTGCTAGCCTGTACAATGGAAGGAGATCTATCAAGTGTTCTTGCTTTTGAAGAAGCCTCAAGTGAAAGCTCCTCTGATTCTTCCTCTTCCCAGTTAAAATCAGAGGCAAATACTGAAATGAACCATCCAAATCCTAGCAATGCAAATTCCTCAAAGCCGTCACTGCCCAACTCTCAAAACCATCGTTCTCTCTCTGAAACACTCAAATTTGGAAGTTTCCCAAACTCTGCTAACCCTGAAACGCCAGAAGGCAAGGAAGAGAGTTTGTCATCTATGCTAGATAGTTTGGAGAAATGTTTGGGATCCACAAAGGATTATGTCCTCTCTTCATCTCAGACATCTACCTCTGAAGAAAAATCAGGAGCTGTTCGAAAGGGGCGGACCAAGGCAGAATTAGCAGCACTTCGGAAGAGGTCCTTCCAGATGGAGAGAAATTACAGGGCTTATAGGTCAAAAGGAGGCTTCAAATCGGGGAAGCTCGCTGCATTTGGTAGTTTTGTTATGGAAAAGAGGCCAAAGCCTCCATCTGATCTTCCTGGAGTTCACACAAAAGATTCCTCATCAAAGGTAACTGGTTCATCTGCAAGAGGTTGCTTGTCAACAGTACCTTCAAAAGGTACCACATCTTCATTGCCTTCTGTGGATACCAAGCAGAAACAGAAGTCTGATTCAGAAGAAAAATCTGACACTAAGACTCCAGTCAGCACCTCTGTTCCACCCAAGACTATTGATTACTGTGCTGGCATCCCATATGATAAGTCTCTAGGGAAGTATGTCCCACAAGATAAGAAGGATGAGCTGATTTTGAAGCTAGTACCCCGGCTGCAGAAGCTGCAGGATGAGCTACAAAGTTGGACAGAGTGGGCCAATGAGAAGGTTATGCAGGTTTCTCGTAGACTTGGTAAAGAACGACCTGAACTTAAAGCACTGAGGCAAGAGAAGGAAGAAGCCGGGAAATTTGAAAAGGAGAAACAAGTGGTGGAAGAGAATACCATGAAGAGGCTGTTTGAGATGGAGCATGCATTGAATAATGCATCCAGCCAGGTTGAGAGTGCTAACTCAACTATCTCTAGGCTTCAGGTGAACAATTCCACTCTCAAGAAGCAGTTGAGTTCTGCAAAAATAATGGCTATAGAATCAGCTGCTAATCTCCAGGAAGCATTAGAGAGGGAGAATAAAGCACTGAAAAAGGTCCAGGCATGGGAAGGGCAGAAGGGATCATTGCAGGAGGAGCTTGAAACAAAAAAGAACAAGGTGGCTGCACTTCAACAGGATTTAGGCAAGGCAAAAAATGCTCTTCATCAAATTGAGGCCAGATGGAAACGGGAGATAATGGAAAAGGAAACAATACTCGCACAGGCTGACTCTATGAGAAATGAAAGAGAACAGCGTGAAGCTTTAACACAAGTGGAGGAGGCCAAGATCAAACACAAGGCTGAAGATGACATGCAGAAGTATGTGGAAGAGATCAAATTACTTGAGAGCAAGTTATCTGAACTTCAAACAAAATCTGACTCCTCAAGAATAGCAGCGCTAAGAAGGGATGCTGCTGGAAGCTTTGGGGCTTGCCTGTCAGACAGAAAAAATGTGAAGCCTACTAAGGGAAGCCAAAGTTCTACCAGCTTCAAGAAGTTAACAAATTCCCGGGACCATTTGGGGACTGAAAGTTTGAGACAGGACCGTGAGTGCGTGATGTGCCTATCTGAGGAGATGTCAGTGGTTTTCCTCCCGTGCGCGCATCAGGTTGTCTGTGCAAAATGCAATGAGCTGCATCTGAAACAAGGAATGAAGGACTGCCCTTCATGTAGGGCTTTAATTCAGCGAAGGATCAAAGTGCAATATGCTCGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

877

Amino Acids

97.64

Weight (kDa)

7.74

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIR2-like_helical	PF20235	156 - 267	2.3e-21	PIR2-like, helical domain
zf-C3HC4_3	PF13920	820 - 868	2.1e-11	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03365 AT1G03365 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000
fragaria_vesca	FvH4_2g24221 FvH4_2g24221 FvH4_2g24221
malus_domestica	MD03G1272000.v1.1 MD11G1292600.v1.1
prunus_persica	Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1
pyrus_communis	pycom03g21660 pycom11g25900
rosa_chinensis	RchiOBHm_Chr6g0292011
rosa_laevigata	RLG00000012070
rosa_multiflora	Rmu_co8265653.1_g000001 Rmu_co8382791.1_g000001 Rmu_sc0008666.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175490 Rroxscaffold_7G00178030
rosa_rugosa	Rorug06G0222500 Rorug06G0222600 Rorug06G0222700 Rorug06G0222800 Rorug06G0222900
rosa_samantha	Rh6AG336400 Rh6BG343700 Rh6CG350000 Rh6DG336700
rosa_wichuraiana	Rw6G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1654
Acc65I	GGTACC	1 cut(s)	1397
AccB1I	GGYRCC	1 cut(s)	1397
AccI	GTMKAC	1 cut(s)	1675
AccII	CGCG	1 cut(s)	2516
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	5 cut(s)	386, 496, 552, 567, 1159
AclWI	GGATC	5 cut(s)	419, 1077, 1090, 2005, 2615
AcsI	RAATTY	5 cut(s)	608, 925, 986, 1736, 2419
AcuI	CTGAAG	4 cut(s)	291, 1149, 1841, 2238
AcvI	CACGTG	1 cut(s)	673
AdeI	CACNNNGTG	1 cut(s)	676
AfaI	GTAC	7 cut(s)	196, 515, 683, 793, 1386, 1399, 1596
AfeI	AGCGCT	1 cut(s)	2313
AfiI	CCNNNNNNNGG	6 cut(s)	562, 1394, 1779, 1981, 2381, 2485
AjnI	CCWGG	4 cut(s)	1315, 1821, 1932, 1974
Alw26I	GTCTC	2 cut(s)	1545, 2446
AlwI	GGATC	5 cut(s)	419, 1077, 1090, 2005, 2615
AlwNI	CAGNNNCTG	3 cut(s)	242, 1145, 1612
Ama87I	CYCGRG	1 cut(s)	2424
Aor13HI	TCCGGA	1 cut(s)	316
Aor51HI	AGCGCT	1 cut(s)	2313
AoxI	GGCC	6 cut(s)	553, 722, 1292, 1644, 2091, 2196
ApoI	RAATTY	5 cut(s)	608, 925, 986, 1736, 2419
ArsI	GACNNNNNNTTYG	2 cut(s)	2431, 2463
Asp718I	GGTACC	1 cut(s)	1397
AspLEI	GCGC	3 cut(s)	2314, 2516, 2518
AspS9I	GGNCC	6 cut(s)	1161, 1194, 1644, 1972, 2428, 2458
AsuC2I	CCSGG	4 cut(s)	1600, 1732, 2425, 2426
AsuHPI	GGTGA	2 cut(s)	143, 1873
AsuII	TTCGAA	1 cut(s)	1150
AsuNHI	GCTAGC	2 cut(s)	265, 784
AvaI	CYCGRG	1 cut(s)	2424
AvaII	GGWCC	5 cut(s)	1161, 1194, 1972, 2428, 2458
AxyI	CCTNAGG	1 cut(s)	375
BamHI	GGATCC	1 cut(s)	1082
BanI	GGYRCC	1 cut(s)	1397
BanII	GRGCYC	1 cut(s)	351
BarI	GAAGNNNNNNTAC	2 cut(s)	1390, 1422
BbrPI	CACGTG	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	233
BccI	CCATC	7 cut(s)	88, 912, 969, 1198, 1312, 1786, 2091
BceAI	ACGGC	3 cut(s)	383, 709, 922
BcgI	CGANNNNNNTGC	3 cut(s)	1652, 1686, 2606
BciT130I	CCWGG	4 cut(s)	1317, 1823, 1934, 1976
BciVI	GTATCC	2 cut(s)	622, 1417
BclI	TGATCA	1 cut(s)	699
BcnI	CCSGG	4 cut(s)	1600, 1732, 2425, 2426
BcoDI	GTCTC	2 cut(s)	1545, 2446
BfmI	CTRYAG	4 cut(s)	279, 1604, 1613, 1911
BfoI	RGCGCY	1 cut(s)	2315
BfuAI	ACCTGC	1 cut(s)	1654
BfuI	GTATCC	2 cut(s)	622, 1417
BglII	AGATCT	1 cut(s)	805
Bme1390I	CCNGG	8 cut(s)	1317, 1600, 1732, 1823, 1934, 1976, 2425, 2426
Bme18I	GGWCC	5 cut(s)	1161, 1194, 1972, 2428, 2458
BmeT110I	CYCGRG	1 cut(s)	2424
BmgT120I	GGNCC	6 cut(s)	1161, 1194, 1644, 1972, 2428, 2458
BmiI	GGNNCC	4 cut(s)	397, 1084, 1399, 2429
BmrFI	CCNGG	8 cut(s)	1317, 1600, 1732, 1823, 1934, 1976, 2425, 2426
BmrI	ACTGGG	1 cut(s)	865
BmsI	GCATC	6 cut(s)	625, 1533, 1823, 2314, 2527, 2560
BmtI	GCTAGC	2 cut(s)	269, 788
BmuI	ACTGGG	1 cut(s)	865
BoxI	GACNNNNGTC	1 cut(s)	1478
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	3 cut(s)	1338, 1461, 1916
Bpu10I	CCTNAGC	2 cut(s)	345, 710
Bpu14I	TTCGAA	1 cut(s)	1150
BpuEI	CTTGAG	5 cut(s)	599, 823, 1862, 2279, 2284
BpuMI	CCSGG	4 cut(s)	1600, 1732, 2425, 2426
BsaAI	YACGTR	2 cut(s)	562, 673
BsaJI	CCNNGG	4 cut(s)	208, 1164, 1598, 2424
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	1459, 1489
Bsc4I	CCNNNNNNNGG	6 cut(s)	562, 1394, 1779, 1981, 2381, 2485
Bse1I	ACTGG	5 cut(s)	202, 236, 871, 1357, 1478
Bse21I	CCTNAGG	1 cut(s)	375
Bse3DI	GCAATG	6 cut(s)	429, 753, 925, 1409, 2000, 2548
BseAI	TCCGGA	1 cut(s)	316
BseBI	CCWGG	4 cut(s)	1317, 1823, 1934, 1976
BseDI	CCNNGG	4 cut(s)	208, 1164, 1598, 2424
BseGI	GGATG	8 cut(s)	219, 427, 904, 1524, 1579, 1624, 1814, 2329
BseLI	CCNNNNNNNGG	6 cut(s)	562, 1394, 1779, 1981, 2381, 2485
BseMI	GCAATG	6 cut(s)	429, 753, 925, 1409, 2000, 2548
BseMII	CTCAG	4 cut(s)	336, 1127, 1700, 2475
BseNI	ACTGG	5 cut(s)	202, 236, 871, 1357, 1478
BsePI	GCGCGC	1 cut(s)	2514
BseRI	GAGGAG	6 cut(s)	536, 841, 2024, 2207, 2287, 2501
BsgI	GTGCAG	1 cut(s)	2025
Bsh1236I	CGCG	1 cut(s)	2516
BshFI	GGCC	6 cut(s)	555, 724, 1294, 1646, 2093, 2198
BshNI	GGYRCC	1 cut(s)	1397
BsiHKCI	CYCGRG	1 cut(s)	2424
BsiSI	CCGG	4 cut(s)	317, 1600, 1731, 2425
BslFI	GGGAC	3 cut(s)	1541, 2441, 2452
BslI	CCNNNNNNNGG	6 cut(s)	562, 1394, 1779, 1981, 2381, 2485
BsmAI	GTCTC	2 cut(s)	1545, 2446
BsmFI	GGGAC	3 cut(s)	1541, 2441, 2452
BsnI	GGCC	6 cut(s)	555, 724, 1294, 1646, 2093, 2198
BsoBI	CYCGRG	1 cut(s)	2424
Bsp119I	TTCGAA	1 cut(s)	1150
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp13I	TCCGGA	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	791
Bsp143I	GATC	9 cut(s)	424, 699, 805, 1082, 1309, 1997, 2202, 2247, 2607
BspACI	CCGC	5 cut(s)	386, 496, 552, 567, 1159
BspANI	GGCC	6 cut(s)	555, 724, 1294, 1646, 2093, 2198
BspCNI	CTCAG	4 cut(s)	337, 1126, 1701, 2476
BspEI	TCCGGA	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	2516
BspLI	GGNNCC	4 cut(s)	397, 1084, 1399, 2429
BspMAI	CTGCAG	2 cut(s)	1608, 1617
BspMI	ACCTGC	1 cut(s)	1654
BspOI	GCTAGC	2 cut(s)	269, 788
BspPI	GGATC	5 cut(s)	419, 1077, 1090, 2005, 2615
BspQI	GCTCTTC	1 cut(s)	2082
BspT104I	TTCGAA	1 cut(s)	1150
BspT107I	GGYRCC	1 cut(s)	1397
BsrDI	GCAATG	6 cut(s)	429, 753, 925, 1409, 2000, 2548
BsrGI	TGTACA	1 cut(s)	791
BsrI	ACTGG	5 cut(s)	202, 236, 871, 1357, 1478
BssECI	CCNNGG	4 cut(s)	208, 1164, 1598, 2424
BssHII	GCGCGC	1 cut(s)	2514
BssMI	GATC	9 cut(s)	424, 699, 805, 1082, 1309, 1997, 2202, 2247, 2607
BssT1I	CCWWGG	2 cut(s)	208, 1164
Bst2UI	CCWGG	4 cut(s)	1317, 1823, 1934, 1976
Bst4CI	ACNGT	6 cut(s)	142, 364, 518, 1384, 1517, 2462
Bst6I	CTCTTC	8 cut(s)	871, 1032, 1111, 1184, 1758, 1772, 2082, 2238
BstAPI	GCANNNNNTGC	2 cut(s)	1612, 2072
BstAUI	TGTACA	1 cut(s)	791
BstBAI	YACGTR	2 cut(s)	562, 673
BstBI	TTCGAA	1 cut(s)	1150
BstDEI	CTNAG	9 cut(s)	345, 375, 710, 1113, 1470, 1709, 2315, 2379, 2484
BstENI	CCTNNNNNAGG	2 cut(s)	1392, 2483
BstF5I	GGATG	8 cut(s)	219, 427, 904, 1524, 1579, 1624, 1814, 2329
BstFNI	CGCG	1 cut(s)	2516
BstH2I	RGCGCY	1 cut(s)	2315
BstHHI	GCGC	3 cut(s)	2314, 2516, 2518
BstKTI	GATC	9 cut(s)	427, 702, 808, 1085, 1312, 2000, 2205, 2250, 2610
BstMAI	GTCTC	2 cut(s)	1545, 2446
BstMBI	GATC	9 cut(s)	424, 699, 805, 1082, 1309, 1997, 2202, 2247, 2607
BstNI	CCWGG	4 cut(s)	1317, 1823, 1934, 1976
BstNSI	RCATGY	3 cut(s)	438, 1802, 2230
BstPAI	GACNNNNGTC	1 cut(s)	1478
BstSCI	CCNGG	8 cut(s)	1315, 1598, 1730, 1821, 1932, 1974, 2423, 2424
BstSFI	CTRYAG	4 cut(s)	279, 1604, 1613, 1911
BstUI	CGCG	1 cut(s)	2516
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	2 cut(s)	805, 1082
BstYI	RGATCY	2 cut(s)	805, 1082
Bsu36I	CCTNAGG	1 cut(s)	375
BsuI	GTATCC	2 cut(s)	622, 1417
BsuRI	GGCC	6 cut(s)	555, 724, 1294, 1646, 2093, 2198
BtsCI	GGATG	8 cut(s)	219, 427, 904, 1524, 1579, 1624, 1814, 2329
BtsI	GCAGTG	1 cut(s)	941
BtsIMutI	CAGTG	6 cut(s)	523, 709, 941, 1706, 1961, 2502
BveI	ACCTGC	1 cut(s)	1654
CaiI	CAGNNNCTG	3 cut(s)	242, 1145, 1612
CfoI	GCGC	3 cut(s)	2314, 2516, 2518
Cfr13I	GGNCC	6 cut(s)	1161, 1194, 1644, 1972, 2428, 2458
Cfr9I	CCCGGG	1 cut(s)	2424
Csp6I	GTAC	7 cut(s)	195, 514, 682, 792, 1385, 1398, 1595
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	6 cut(s)	435, 1774, 1799, 1980, 2227, 2583
CviQI	GTAC	7 cut(s)	195, 514, 682, 792, 1385, 1398, 1595
DdeI	CTNAG	9 cut(s)	345, 375, 710, 1113, 1470, 1709, 2315, 2379, 2484
DpnI	GATC	9 cut(s)	426, 701, 807, 1084, 1311, 1999, 2204, 2249, 2609
DpnII	GATC	9 cut(s)	424, 699, 805, 1082, 1309, 1997, 2202, 2247, 2607
DraIII	CACNNNGTG	1 cut(s)	676
Eam1104I	CTCTTC	8 cut(s)	871, 1032, 1111, 1184, 1758, 1772, 2082, 2238
EarI	CTCTTC	8 cut(s)	871, 1032, 1111, 1184, 1758, 1772, 2082, 2238
EciI	GGCGGA	1 cut(s)	1174
Eco130I	CCWWGG	2 cut(s)	208, 1164
Eco24I	GRGCYC	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	5 cut(s)	1161, 1194, 1972, 2428, 2458
Eco47III	AGCGCT	1 cut(s)	2313
Eco57I	CTGAAG	4 cut(s)	291, 1149, 1841, 2238
Eco72I	CACGTG	1 cut(s)	673
Eco81I	CCTNAGG	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	2424
EcoNI	CCTNNNNNAGG	2 cut(s)	1392, 2483
EcoO109I	RGGNCCY	1 cut(s)	1194
EcoRII	CCWGG	4 cut(s)	1315, 1821, 1932, 1974
EcoRV	GATATC	1 cut(s)	324
EcoT14I	CCWWGG	2 cut(s)	208, 1164
EcoT22I	ATGCAT	2 cut(s)	1804, 1816
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	2 cut(s)	208, 1164
FaeI	CATG	6 cut(s)	438, 1777, 1802, 1983, 2230, 2586
FalI	AAGNNNNNCTT	2 cut(s)	1181, 1213
FaqI	GGGAC	3 cut(s)	1541, 2441, 2452
FatI	CATG	6 cut(s)	434, 1773, 1798, 1979, 2226, 2582
FauNDI	CATATG	1 cut(s)	1531
FbaI	TGATCA	1 cut(s)	699
FblI	GTMKAC	1 cut(s)	1675
FokI	GGATG	8 cut(s)	226, 434, 891, 1511, 1586, 1631, 1801, 2336
FriOI	GRGCYC	1 cut(s)	351
GlaI	GCGC	3 cut(s)	2313, 2515, 2517
GsuI	CTGGAG	3 cut(s)	1338, 1461, 1916
HaeII	RGCGCY	1 cut(s)	2315
HaeIII	GGCC	6 cut(s)	555, 724, 1294, 1646, 2093, 2198
HapII	CCGG	4 cut(s)	317, 1600, 1731, 2425
HhaI	GCGC	3 cut(s)	2314, 2516, 2518
Hin1II	CATG	6 cut(s)	438, 1777, 1802, 1983, 2230, 2586
Hin6I	GCGC	3 cut(s)	2312, 2514, 2516
HinP1I	GCGC	3 cut(s)	2312, 2514, 2516
HincII	GTYRAC	2 cut(s)	1380, 2415
HindII	GTYRAC	2 cut(s)	1380, 2415
HindIII	AAGCTT	2 cut(s)	2175, 2335
HinfI	GANTC	8 cut(s)	575, 857, 1334, 1448, 1474, 1916, 2144, 2294
HpaI	GTTAAC	1 cut(s)	2415
HpaII	CCGG	4 cut(s)	317, 1600, 1731, 2425
HphI	GGTGA	2 cut(s)	143, 1873
Hpy166II	GTNNAC	9 cut(s)	8, 72, 341, 684, 1324, 1380, 1676, 1864, 2415
Hpy8I	GTNNAC	9 cut(s)	8, 72, 341, 684, 1324, 1380, 1676, 1864, 2415
HpyCH4III	ACNGT	6 cut(s)	142, 364, 518, 1384, 1517, 2462
HpyCH4IV	ACGT	2 cut(s)	561, 672
HpyF3I	CTNAG	9 cut(s)	345, 375, 710, 1113, 1470, 1709, 2315, 2379, 2484
HpySE526I	ACGT	2 cut(s)	561, 672
Hsp92II	CATG	6 cut(s)	438, 1777, 1802, 1983, 2230, 2586
HspAI	GCGC	3 cut(s)	2312, 2514, 2516
Kpn2I	TCCGGA	1 cut(s)	316
KpnI	GGTACC	1 cut(s)	1401
Ksp22I	TGATCA	1 cut(s)	699
KspAI	GTTAAC	1 cut(s)	2415
Kzo9I	GATC	9 cut(s)	424, 699, 805, 1082, 1309, 1997, 2202, 2247, 2607
LguI	GCTCTTC	1 cut(s)	2082
LmnI	GCTCC	5 cut(s)	395, 854, 1142, 1795, 2011
LweI	GCATC	6 cut(s)	625, 1533, 1823, 2314, 2527, 2560
MaeII	ACGT	2 cut(s)	561, 672
MaeIII	GTNAC	5 cut(s)	293, 756, 767, 939, 1348
MalI	GATC	9 cut(s)	426, 701, 807, 1084, 1311, 1999, 2204, 2249, 2609
MboI	GATC	9 cut(s)	424, 699, 805, 1082, 1309, 1997, 2202, 2247, 2607
MflI	RGATCY	2 cut(s)	805, 1082
MhlI	GDGCHC	1 cut(s)	351
MlyI	GAGTC	4 cut(s)	569, 1468, 2138, 2288
MmeI	TCCRAC	1 cut(s)	1613
Mph1103I	ATGCAT	2 cut(s)	1804, 1816
MroI	TCCGGA	1 cut(s)	316
MseI	TTAA	6 cut(s)	62, 875, 1701, 2180, 2414, 2594
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	1922
MspI	CCGG	4 cut(s)	317, 1600, 1731, 2425
MspR9I	CCNGG	8 cut(s)	1317, 1600, 1732, 1823, 1934, 1976, 2425, 2426
MvaI	CCWGG	4 cut(s)	1317, 1823, 1934, 1976
MvnI	CGCG	1 cut(s)	2516
NciI	CCSGG	4 cut(s)	1600, 1732, 2425, 2426
NdeI	CATATG	1 cut(s)	1531
NdeII	GATC	9 cut(s)	424, 699, 805, 1082, 1309, 1997, 2202, 2247, 2607
NheI	GCTAGC	2 cut(s)	265, 784
NlaIII	CATG	6 cut(s)	438, 1777, 1802, 1983, 2230, 2586
NlaIV	GGNNCC	4 cut(s)	397, 1084, 1399, 2429
NmuCI	GTSAC	2 cut(s)	767, 939
NsiI	ATGCAT	2 cut(s)	1804, 1816
NspI	RCATGY	3 cut(s)	438, 1802, 2230
NspV	TTCGAA	1 cut(s)	1150
PaeI	GCATGC	2 cut(s)	438, 1802
PauI	GCGCGC	1 cut(s)	2514
PciSI	GCTCTTC	1 cut(s)	2082
PfeI	GAWTC	4 cut(s)	857, 1334, 1448, 1916
PfoI	TCCNGGA	2 cut(s)	1315, 1932
PleI	GAGTC	4 cut(s)	569, 1468, 2138, 2288
PmaCI	CACGTG	1 cut(s)	673
PmlI	CACGTG	1 cut(s)	673
PpsI	GAGTC	4 cut(s)	569, 1468, 2138, 2288
Ppu21I	YACGTR	2 cut(s)	562, 673
PpuMI	RGGWCCY	1 cut(s)	1194
PshAI	GACNNNNGTC	1 cut(s)	1478
Psp5II	RGGWCCY	1 cut(s)	1194
Psp6I	CCWGG	4 cut(s)	1315, 1821, 1932, 1974
PspCI	CACGTG	1 cut(s)	673
PspGI	CCWGG	4 cut(s)	1315, 1821, 1932, 1974
PspN4I	GGNNCC	4 cut(s)	397, 1084, 1399, 2429
PspPI	GGNCC	6 cut(s)	1161, 1194, 1644, 1972, 2428, 2458
PspPPI	RGGWCCY	1 cut(s)	1194
PstI	CTGCAG	2 cut(s)	1608, 1617
PstNI	CAGNNNCTG	3 cut(s)	242, 1145, 1612
PsuI	RGATCY	2 cut(s)	805, 1082
PteI	GCGCGC	1 cut(s)	2514
PvuII	CAGCTG	1 cut(s)	1922
RsaI	GTAC	7 cut(s)	196, 515, 683, 793, 1386, 1399, 1596
RsaNI	GTAC	7 cut(s)	195, 514, 682, 792, 1385, 1398, 1595
RseI	CAYNNNNRTG	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	2082
SaqAI	TTAA	6 cut(s)	62, 875, 1701, 2180, 2414, 2594
Sau3AI	GATC	9 cut(s)	424, 699, 805, 1082, 1309, 1997, 2202, 2247, 2607
Sau96I	GGNCC	6 cut(s)	1161, 1194, 1644, 1972, 2428, 2458
SchI	GAGTC	4 cut(s)	569, 1468, 2138, 2288
ScrFI	CCNGG	8 cut(s)	1317, 1600, 1732, 1823, 1934, 1976, 2425, 2426
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	6 cut(s)	625, 1533, 1823, 2314, 2527, 2560
SfcI	CTRYAG	4 cut(s)	279, 1604, 1613, 1911
SfuI	TTCGAA	1 cut(s)	1150
SinI	GGWCC	5 cut(s)	1161, 1194, 1972, 2428, 2458
SmaI	CCCGGG	1 cut(s)	2426
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	5 cut(s)	614, 838, 1877, 2258, 2299
SmoI	CTYRAG	5 cut(s)	614, 838, 1877, 2258, 2299
SphI	GCATGC	2 cut(s)	438, 1802
SsiI	CCGC	5 cut(s)	386, 496, 552, 567, 1159
StyD4I	CCNGG	8 cut(s)	1315, 1598, 1730, 1821, 1932, 1974, 2423, 2424
StyI	CCWWGG	2 cut(s)	208, 1164
TaaI	ACNGT	6 cut(s)	142, 364, 518, 1384, 1517, 2462
TaiI	ACGT	2 cut(s)	564, 675
TaqI	TCGA	1 cut(s)	1150
TatI	WGTACW	2 cut(s)	681, 791
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	4 cut(s)	857, 1334, 1448, 1916
Tru1I	TTAA	6 cut(s)	62, 875, 1701, 2180, 2414, 2594
Tru9I	TTAA	6 cut(s)	62, 875, 1701, 2180, 2414, 2594
TscAI	CASTG	6 cut(s)	523, 709, 948, 1713, 1968, 2502
TseFI	GTSAC	2 cut(s)	767, 939
Tsp45I	GTSAC	2 cut(s)	767, 939
TspDTI	ATGAA	9 cut(s)	914, 1098, 1347, 1398, 1790, 2069, 2172, 2571, 2582
TspGWI	ACGGA	1 cut(s)	349
TspMI	CCCGGG	1 cut(s)	2424
TspRI	CASTG	6 cut(s)	523, 709, 948, 1713, 1968, 2502
VpaK11BI	GGWCC	5 cut(s)	1161, 1194, 1972, 2428, 2458
XagI	CCTNNNNNAGG	2 cut(s)	1392, 2483
XapI	RAATTY	5 cut(s)	608, 925, 986, 1736, 2419
XbaI	TCTAGA	2 cut(s)	326, 545
XceI	RCATGY	3 cut(s)	438, 1802, 2230
XmaI	CCCGGG	1 cut(s)	2424
XmiI	GTMKAC	1 cut(s)	1675
Zsp2I	ATGCAT	2 cut(s)	1804, 1816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.