Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002982

Physical Location & Seq

Genomic Coordinates Forward (+)

54097328 .. 54101508

Gene Structure 4181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG336700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2457 bp

ATGGTTAATAGTGGTGGTACTGGCAGCAACCAAGGGATGCCGTTAGAGAAGACTAAACCAGTAGCTGTTTGTTCTATAAAGAAAAAGCTAGCTGAAGCTGCTGTAGTGAGTATAAGTAACCATTTGAGTGAAGCACCTCCGGAGATATCTAGAAAACGGAGTGAACCTGAGCCCGTAGAGGCTACGGTGGTTCAGCCTAAGGAGGAAGTGGAAACGGGAGCCGTTGAAGATGCTAGAGATTGGGATGATCCCATTGCATGCCAGCTTGAAGAACTATTGTTGTCTTATTTGCAAGCAATTTTCCAGAGTGCAATCAAGCGGATTACTGAATGTGGGTACAGTGAGGAGGTTGCTGTGAAGGCTGTTTCTAGAGGCGGCCTTTACGTAGGCGGTAAAGACTCTGTATTGAACATTGTAAATGATACTCTGGAATTTCTCAAGGGAGGGAAGGATACTGATGTTTCAAGAGAAAATGAGTTTGATAATTTGCAGCACGTGGTGGAGTACACAATGCTAGAAATGATCAGTGTGCTTAGGGAGGTCAGGCCATCCTTATCAGTTGCGGAAGCAATGTGGTGGTTACTGATATGTGACCTAAACATTTTGCTAGCCTGTACAATGGAAGGAGATCTATCAAGTGTTCTTGCTTTTGATGAAGCCTCAAGCGAAAGCTCCTCTGATTCTTCCTCTTCCCAGTTAAAATCAGAGGCAAATACGGAAATGAACAATCCAAATCCTAGCAATGCAAATTCCTCAAAGCCGTCACTTCCCAACTCTCAAAACCATCGTTCTCTCTCTGAAACACTCAAATTTGGAAGTTTCCCAAACTCTGCTAACCCTGAAACGCCAGAAGGCAAGGAAGAGAGTTTGTCATCTATGCTAGATAGTTTGGAGAAATGTTTGGGCTCCACAAAGGATTATGTCCTATCTTCATCTCAGACATCTACCTCTGAAGAAAAATCAGGAGCTGTTCGAAAGGGGCGGACCAAGGCAGAATTAGCAGCACTTCGGAAGAGGTCCTTCCAGATGGAGAGAAATTACAGGGCTTATAGGTCAAAAGGAGGCTTCAAATCGGGGAAGCTCGCTGCATTTGGTAGTTTTGTTATGGAAAAGAGGCCAAAGCCTCCATCTGATCTTCCTGGAGTTCGCACAAAAGATTCCTCATCAAAGGTAACTGGTTCATCTGCAAGAGGTTGCTCGTCAACAGTACCTTCAAAAGGTACCACATCTTCATTGCCTTCTGTGGATACCAAGCAGAAACAGAAGTCTGATTCAGAAGAAAAATCTGACACTAAGACTCCAGTCAGCACCTCTGTTCCACCCAAGACTATTGATTACTGTGCTGGCATCCCATATGATAAGTCTCTAGGGAAGTATGTCCCACAAGATAAGAAGGATGAGCTGATTTTGAAGCTAGTTTCCCGGCTGCAGAAGCTGCAGGATGAGCTACAAAGTTGGACAGAGTGGGCCAATGAGAAGGTTATGCAGGTTTCTCGTAGACTTGGTAAAGAACGACCTGAACTTAAAGCACTGAGGCAAGAGAAGGAAGAAGCGGGGAAATTTGAAAAGGAGAAACAAGTGGTGGAAGAGAATACCATGAAGAGGCTGTTTGAGATGGAGCATGCATTGAATAATGCATCCAGCCAGGTTGAGAGTGCTAACTCAACTATCTCTAGGCTTCAGGTGAACAATTCCACTCTCAAGAAGCAGTTGAGTTCTGCGAAAATAATGGCTATAGAATCAGCTGCTAATCTCCAGGAAGCATTAGAGAGGGAGAATAAAGCACTGAAAAAGGTCCAGGCATGGGAGGGGCAGAAGGGATCATTGCAGGAGGAGCTTGAAACAAAAAAGAACAAGGTGGCTGCACTTCAACAGGATTTAGGCAAGGCAAAAAATGCTCTTCATCAAATTGAGGCCAGATGGAAACGGGAGATAATGGAAAAGGAAACAATACTCGCACTGGCTGACTCTATGAGAAATGAAAGAGAACAGCGTGAAGCTTTAACACAAGTGGAGGAGGCCAAGATCAAACACAAGGCTGAAGATGACATGCAGAAGTATGTGGAAGAGATCAAATTACTTGAGAGCAAGTTATCTGAACTTCAAACAAAATCTGACTCCTCAAGAATAGCAGCGCTAAGAAGGGATGCTGCTGGAAGCTTTGGGGCTTGCCTGTCAGACAGAAAAAATGTGAAGCCTACTAAGGGAAGCCAAAGTTCTACCAGCTTCAAGAAGTTAACAAATTCCCGGGACCATTTGGGGACTGAAAGTTTGAGACAGGACCGCGAGTGCGTGATGTGCCTATCTGAGGAGAGGTCAGTGGTTTTCCTCCCGTGCGCGCATCAGGTTGTCTGTGCAAAATGCAATGAGCTGCATCTGAAACAAGGAATGAAGGACTGCCCTTCATGTAGGGCTTTAATTCAGCGAAGGATCAAAGTGCAATATGCTCGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

818

Amino Acids

90.66

Weight (kDa)

8.26

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIR2-like_helical	PF20235	97 - 208	4.3e-21	PIR2-like, helical domain
zf-C3HC4_3	PF13920	761 - 809	5.6e-12	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03365 AT1G03365 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000
fragaria_vesca	FvH4_2g24221 FvH4_2g24221 FvH4_2g24221
malus_domestica	MD03G1272000.v1.1 MD11G1292600.v1.1
prunus_persica	Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1
pyrus_communis	pycom03g21660 pycom11g25900
rosa_chinensis	RchiOBHm_Chr6g0292011
rosa_laevigata	RLG00000012070
rosa_multiflora	Rmu_co8265653.1_g000001 Rmu_co8382791.1_g000001 Rmu_sc0008666.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175490 Rroxscaffold_7G00178030
rosa_rugosa	Rorug06G0222500 Rorug06G0222600 Rorug06G0222700 Rorug06G0222800 Rorug06G0222900
rosa_samantha	Rh6AG336400 Rh6BG343700 Rh6CG350000 Rh6DG336700
rosa_wichuraiana	Rw6G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1477
Acc65I	GGTACC	1 cut(s)	1220
AccB1I	GGYRCC	1 cut(s)	1220
AccI	GTMKAC	1 cut(s)	1498
AccII	CGCG	2 cut(s)	2286, 2339
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	7 cut(s)	319, 375, 390, 563, 982, 1553, 2284
AclWI	GGATC	3 cut(s)	242, 1828, 2438
AcsI	RAATTY	5 cut(s)	431, 748, 809, 1559, 2242
AcuI	CTGAAG	4 cut(s)	114, 972, 1664, 2061
AcvI	CACGTG	1 cut(s)	496
AdeI	CACNNNGTG	1 cut(s)	499
AfaI	GTAC	6 cut(s)	19, 338, 506, 616, 1209, 1222
AfeI	AGCGCT	1 cut(s)	2136
AfiI	CCNNNNNNNGG	5 cut(s)	1217, 1602, 1804, 2204, 2308
AjnI	CCWGG	4 cut(s)	1138, 1644, 1755, 1797
Alw26I	GTCTC	2 cut(s)	1368, 2269
AlwI	GGATC	3 cut(s)	242, 1828, 2438
AlwNI	CAGNNNCTG	3 cut(s)	65, 968, 1435
Ama87I	CYCGRG	1 cut(s)	2247
Aor13HI	TCCGGA	1 cut(s)	139
Aor51HI	AGCGCT	1 cut(s)	2136
AoxI	GGCC	6 cut(s)	376, 545, 1115, 1467, 1914, 2019
ApoI	RAATTY	5 cut(s)	431, 748, 809, 1559, 2242
ArsI	GACNNNNNNTTYG	2 cut(s)	2254, 2286
Asp718I	GGTACC	1 cut(s)	1220
AspLEI	GCGC	3 cut(s)	2137, 2339, 2341
AspS9I	GGNCC	6 cut(s)	984, 1017, 1467, 1795, 2251, 2281
AsuC2I	CCSGG	3 cut(s)	1423, 2248, 2249
AsuHPI	GGTGA	1 cut(s)	1696
AsuII	TTCGAA	1 cut(s)	973
AsuNHI	GCTAGC	2 cut(s)	88, 607
AvaI	CYCGRG	1 cut(s)	2247
AvaII	GGWCC	5 cut(s)	984, 1017, 1795, 2251, 2281
AxyI	CCTNAGG	1 cut(s)	198
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BanI	GGYRCC	1 cut(s)	1220
BanII	GRGCYC	2 cut(s)	174, 908
BarI	GAAGNNNNNNTAC	2 cut(s)	1213, 1245
BbrPI	CACGTG	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	56
BccI	CCATC	6 cut(s)	556, 792, 1021, 1135, 1609, 1914
BceAI	ACGGC	3 cut(s)	25, 206, 745
BcgI	CGANNNNNNTGC	3 cut(s)	1475, 1509, 2429
BciT130I	CCWGG	4 cut(s)	1140, 1646, 1757, 1799
BciVI	GTATCC	2 cut(s)	445, 1240
BclI	TGATCA	1 cut(s)	522
BcnI	CCSGG	3 cut(s)	1423, 2248, 2249
BcoDI	GTCTC	2 cut(s)	1368, 2269
BfmI	CTRYAG	4 cut(s)	102, 1427, 1436, 1734
BfoI	RGCGCY	1 cut(s)	2138
BfuAI	ACCTGC	1 cut(s)	1477
BfuI	GTATCC	2 cut(s)	445, 1240
BglII	AGATCT	1 cut(s)	628
Bme1390I	CCNGG	7 cut(s)	1140, 1423, 1646, 1757, 1799, 2248, 2249
Bme18I	GGWCC	5 cut(s)	984, 1017, 1795, 2251, 2281
BmeT110I	CYCGRG	1 cut(s)	2247
BmgT120I	GGNCC	6 cut(s)	984, 1017, 1467, 1795, 2251, 2281
BmiI	GGNNCC	4 cut(s)	220, 907, 1222, 2252
BmrFI	CCNGG	7 cut(s)	1140, 1423, 1646, 1757, 1799, 2248, 2249
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	7 cut(s)	27, 220, 1356, 1646, 2137, 2350, 2383
BmtI	GCTAGC	2 cut(s)	92, 611
BmuI	ACTGGG	1 cut(s)	688
BoxI	GACNNNNGTC	1 cut(s)	1301
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	3 cut(s)	1161, 1284, 1739
Bpu10I	CCTNAGC	2 cut(s)	168, 533
Bpu14I	TTCGAA	1 cut(s)	973
BpuEI	CTTGAG	5 cut(s)	422, 646, 1685, 2102, 2107
BpuMI	CCSGG	3 cut(s)	1423, 2248, 2249
BsaAI	YACGTR	2 cut(s)	385, 496
BsaJI	CCNNGG	3 cut(s)	31, 987, 2247
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	1282, 1312
Bsc4I	CCNNNNNNNGG	5 cut(s)	1217, 1602, 1804, 2204, 2308
Bse1I	ACTGG	6 cut(s)	25, 59, 694, 1180, 1301, 1965
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	6 cut(s)	252, 576, 748, 1232, 1823, 2371
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	4 cut(s)	1140, 1646, 1757, 1799
BseDI	CCNNGG	3 cut(s)	31, 987, 2247
BseGI	GGATG	8 cut(s)	42, 250, 548, 1347, 1402, 1447, 1637, 2152
BseLI	CCNNNNNNNGG	5 cut(s)	1217, 1602, 1804, 2204, 2308
BseMI	GCAATG	6 cut(s)	252, 576, 748, 1232, 1823, 2371
BseMII	CTCAG	4 cut(s)	159, 950, 1523, 2298
BseNI	ACTGG	6 cut(s)	25, 59, 694, 1180, 1301, 1965
BsePI	GCGCGC	1 cut(s)	2337
BseRI	GAGGAG	6 cut(s)	359, 664, 1847, 2030, 2110, 2324
BsgI	GTGCAG	1 cut(s)	1848
Bsh1236I	CGCG	2 cut(s)	2286, 2339
BshFI	GGCC	6 cut(s)	378, 547, 1117, 1469, 1916, 2021
BshNI	GGYRCC	1 cut(s)	1220
BsiHKCI	CYCGRG	1 cut(s)	2247
BsiSI	CCGG	3 cut(s)	140, 1423, 2248
BslFI	GGGAC	3 cut(s)	1364, 2264, 2275
BslI	CCNNNNNNNGG	5 cut(s)	1217, 1602, 1804, 2204, 2308
BsmAI	GTCTC	2 cut(s)	1368, 2269
BsmFI	GGGAC	3 cut(s)	1364, 2264, 2275
BsnI	GGCC	6 cut(s)	378, 547, 1117, 1469, 1916, 2021
BsoBI	CYCGRG	1 cut(s)	2247
Bsp119I	TTCGAA	1 cut(s)	973
Bsp1286I	GDGCHC	2 cut(s)	174, 908
Bsp13I	TCCGGA	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	614
Bsp143I	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 2025, 2070, 2430
BspACI	CCGC	7 cut(s)	319, 375, 390, 563, 982, 1553, 2284
BspANI	GGCC	6 cut(s)	378, 547, 1117, 1469, 1916, 2021
BspCNI	CTCAG	4 cut(s)	160, 949, 1524, 2299
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	2 cut(s)	2286, 2339
BspLI	GGNNCC	4 cut(s)	220, 907, 1222, 2252
BspMAI	CTGCAG	2 cut(s)	1431, 1440
BspMI	ACCTGC	1 cut(s)	1477
BspOI	GCTAGC	2 cut(s)	92, 611
BspPI	GGATC	3 cut(s)	242, 1828, 2438
BspQI	GCTCTTC	1 cut(s)	1905
BspT104I	TTCGAA	1 cut(s)	973
BspT107I	GGYRCC	1 cut(s)	1220
BsrDI	GCAATG	6 cut(s)	252, 576, 748, 1232, 1823, 2371
BsrGI	TGTACA	1 cut(s)	614
BsrI	ACTGG	6 cut(s)	25, 59, 694, 1180, 1301, 1965
BssECI	CCNNGG	3 cut(s)	31, 987, 2247
BssHII	GCGCGC	1 cut(s)	2337
BssMI	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 2025, 2070, 2430
BssT1I	CCWWGG	2 cut(s)	31, 987
Bst2UI	CCWGG	4 cut(s)	1140, 1646, 1757, 1799
Bst4CI	ACNGT	4 cut(s)	187, 341, 1207, 1340
Bst6I	CTCTTC	7 cut(s)	694, 855, 1007, 1581, 1595, 1905, 2061
BstAPI	GCANNNNNTGC	2 cut(s)	1435, 1895
BstAUI	TGTACA	1 cut(s)	614
BstBAI	YACGTR	2 cut(s)	385, 496
BstBI	TTCGAA	1 cut(s)	973
BstDEI	CTNAG	9 cut(s)	168, 198, 533, 936, 1293, 1532, 2138, 2202, 2307
BstENI	CCTNNNNNAGG	2 cut(s)	1215, 2306
BstF5I	GGATG	8 cut(s)	42, 250, 548, 1347, 1402, 1447, 1637, 2152
BstFNI	CGCG	2 cut(s)	2286, 2339
BstH2I	RGCGCY	1 cut(s)	2138
BstHHI	GCGC	3 cut(s)	2137, 2339, 2341
BstKTI	GATC	8 cut(s)	250, 525, 631, 1135, 1823, 2028, 2073, 2433
BstMAI	GTCTC	2 cut(s)	1368, 2269
BstMBI	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 2025, 2070, 2430
BstMWI	GCNNNNNNNGC	9 cut(s)	98, 359, 998, 1432, 1435, 1444, 1834, 1895, 2298
BstNI	CCWGG	4 cut(s)	1140, 1646, 1757, 1799
BstNSI	RCATGY	3 cut(s)	261, 1625, 2053
BstPAI	GACNNNNGTC	1 cut(s)	1301
BstSCI	CCNGG	7 cut(s)	1138, 1421, 1644, 1755, 1797, 2246, 2247
BstSFI	CTRYAG	4 cut(s)	102, 1427, 1436, 1734
BstSNI	TACGTA	1 cut(s)	385
BstUI	CGCG	2 cut(s)	2286, 2339
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
Bsu36I	CCTNAGG	1 cut(s)	198
BsuI	GTATCC	2 cut(s)	445, 1240
BsuRI	GGCC	6 cut(s)	378, 547, 1117, 1469, 1916, 2021
BtsCI	GGATG	8 cut(s)	42, 250, 548, 1347, 1402, 1447, 1637, 2152
BtsIMutI	CAGTG	6 cut(s)	346, 532, 1529, 1784, 1958, 2325
BveI	ACCTGC	1 cut(s)	1477
CaiI	CAGNNNCTG	3 cut(s)	65, 968, 1435
CfoI	GCGC	3 cut(s)	2137, 2339, 2341
Cfr13I	GGNCC	6 cut(s)	984, 1017, 1467, 1795, 2251, 2281
Cfr9I	CCCGGG	1 cut(s)	2247
Csp6I	GTAC	6 cut(s)	18, 337, 505, 615, 1208, 1221
CviAII	CATG	6 cut(s)	258, 1597, 1622, 1803, 2050, 2406
CviQI	GTAC	6 cut(s)	18, 337, 505, 615, 1208, 1221
DdeI	CTNAG	9 cut(s)	168, 198, 533, 936, 1293, 1532, 2138, 2202, 2307
DpnI	GATC	8 cut(s)	249, 524, 630, 1134, 1822, 2027, 2072, 2432
DpnII	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 2025, 2070, 2430
DraIII	CACNNNGTG	1 cut(s)	499
Eam1104I	CTCTTC	7 cut(s)	694, 855, 1007, 1581, 1595, 1905, 2061
EarI	CTCTTC	7 cut(s)	694, 855, 1007, 1581, 1595, 1905, 2061
EciI	GGCGGA	1 cut(s)	997
Eco105I	TACGTA	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	31, 987
Eco24I	GRGCYC	2 cut(s)	174, 908
Eco32I	GATATC	1 cut(s)	147
Eco47I	GGWCC	5 cut(s)	984, 1017, 1795, 2251, 2281
Eco47III	AGCGCT	1 cut(s)	2136
Eco57I	CTGAAG	4 cut(s)	114, 972, 1664, 2061
Eco72I	CACGTG	1 cut(s)	496
Eco81I	CCTNAGG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	2247
EcoNI	CCTNNNNNAGG	2 cut(s)	1215, 2306
EcoO109I	RGGNCCY	1 cut(s)	1017
EcoRII	CCWGG	4 cut(s)	1138, 1644, 1755, 1797
EcoRV	GATATC	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	31, 987
EcoT22I	ATGCAT	2 cut(s)	1627, 1639
EcoT38I	GRGCYC	2 cut(s)	174, 908
ErhI	CCWWGG	2 cut(s)	31, 987
FaeI	CATG	6 cut(s)	261, 1600, 1625, 1806, 2053, 2409
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FaqI	GGGAC	3 cut(s)	1364, 2264, 2275
FatI	CATG	6 cut(s)	257, 1596, 1621, 1802, 2049, 2405
FauI	CCCGC	1 cut(s)	1546
FauNDI	CATATG	1 cut(s)	1354
FbaI	TGATCA	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	1498
FokI	GGATG	8 cut(s)	49, 257, 535, 1334, 1409, 1454, 1624, 2159
FriOI	GRGCYC	2 cut(s)	174, 908
GlaI	GCGC	3 cut(s)	2136, 2338, 2340
GsuI	CTGGAG	3 cut(s)	1161, 1284, 1739
HaeII	RGCGCY	1 cut(s)	2138
HaeIII	GGCC	6 cut(s)	378, 547, 1117, 1469, 1916, 2021
HapII	CCGG	3 cut(s)	140, 1423, 2248
HhaI	GCGC	3 cut(s)	2137, 2339, 2341
Hin1II	CATG	6 cut(s)	261, 1600, 1625, 1806, 2053, 2409
Hin6I	GCGC	3 cut(s)	2135, 2337, 2339
HinP1I	GCGC	3 cut(s)	2135, 2337, 2339
HincII	GTYRAC	2 cut(s)	1203, 2238
HindII	GTYRAC	2 cut(s)	1203, 2238
HindIII	AAGCTT	2 cut(s)	1998, 2158
HinfI	GANTC	8 cut(s)	398, 680, 1157, 1271, 1297, 1739, 1967, 2117
HpaI	GTTAAC	1 cut(s)	2238
HpaII	CCGG	3 cut(s)	140, 1423, 2248
HphI	GGTGA	1 cut(s)	1696
Hpy166II	GTNNAC	6 cut(s)	164, 507, 1203, 1499, 1687, 2238
Hpy8I	GTNNAC	6 cut(s)	164, 507, 1203, 1499, 1687, 2238
HpyCH4III	ACNGT	4 cut(s)	187, 341, 1207, 1340
HpyCH4IV	ACGT	2 cut(s)	384, 495
HpyF10VI	GCNNNNNNNGC	9 cut(s)	98, 359, 998, 1432, 1435, 1444, 1834, 1895, 2298
HpyF3I	CTNAG	9 cut(s)	168, 198, 533, 936, 1293, 1532, 2138, 2202, 2307
HpySE526I	ACGT	2 cut(s)	384, 495
Hsp92II	CATG	6 cut(s)	261, 1600, 1625, 1806, 2053, 2409
HspAI	GCGC	3 cut(s)	2135, 2337, 2339
Kpn2I	TCCGGA	1 cut(s)	139
KpnI	GGTACC	1 cut(s)	1224
Ksp22I	TGATCA	1 cut(s)	522
KspAI	GTTAAC	1 cut(s)	2238
Kzo9I	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 2025, 2070, 2430
LguI	GCTCTTC	1 cut(s)	1905
LmnI	GCTCC	6 cut(s)	218, 677, 911, 965, 1618, 1834
LweI	GCATC	7 cut(s)	27, 220, 1356, 1646, 2137, 2350, 2383
MaeII	ACGT	2 cut(s)	384, 495
MaeIII	GTNAC	5 cut(s)	116, 579, 590, 762, 1171
MalI	GATC	8 cut(s)	249, 524, 630, 1134, 1822, 2027, 2072, 2432
MboI	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 2025, 2070, 2430
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	2 cut(s)	174, 908
MlyI	GAGTC	4 cut(s)	392, 1291, 1961, 2111
MmeI	TCCRAC	1 cut(s)	1436
Mph1103I	ATGCAT	2 cut(s)	1627, 1639
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	6 cut(s)	6, 698, 1524, 2003, 2237, 2417
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	1745
MspI	CCGG	3 cut(s)	140, 1423, 2248
MspR9I	CCNGG	7 cut(s)	1140, 1423, 1646, 1757, 1799, 2248, 2249
MvaI	CCWGG	4 cut(s)	1140, 1646, 1757, 1799
MvnI	CGCG	2 cut(s)	2286, 2339
MwoI	GCNNNNNNNGC	9 cut(s)	98, 359, 998, 1432, 1435, 1444, 1834, 1895, 2298
NciI	CCSGG	3 cut(s)	1423, 2248, 2249
NdeI	CATATG	1 cut(s)	1354
NdeII	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 2025, 2070, 2430
NheI	GCTAGC	2 cut(s)	88, 607
NlaIII	CATG	6 cut(s)	261, 1600, 1625, 1806, 2053, 2409
NlaIV	GGNNCC	4 cut(s)	220, 907, 1222, 2252
NmuCI	GTSAC	2 cut(s)	590, 762
NsiI	ATGCAT	2 cut(s)	1627, 1639
NspI	RCATGY	3 cut(s)	261, 1625, 2053
NspV	TTCGAA	1 cut(s)	973
PaeI	GCATGC	2 cut(s)	261, 1625
PauI	GCGCGC	1 cut(s)	2337
PciSI	GCTCTTC	1 cut(s)	1905
PfeI	GAWTC	4 cut(s)	680, 1157, 1271, 1739
PfoI	TCCNGGA	2 cut(s)	1138, 1755
PleI	GAGTC	4 cut(s)	392, 1291, 1961, 2111
PmaCI	CACGTG	1 cut(s)	496
PmlI	CACGTG	1 cut(s)	496
PpsI	GAGTC	4 cut(s)	392, 1291, 1961, 2111
Ppu21I	YACGTR	2 cut(s)	385, 496
PpuMI	RGGWCCY	1 cut(s)	1017
PshAI	GACNNNNGTC	1 cut(s)	1301
Psp5II	RGGWCCY	1 cut(s)	1017
Psp6I	CCWGG	4 cut(s)	1138, 1644, 1755, 1797
PspCI	CACGTG	1 cut(s)	496
PspGI	CCWGG	4 cut(s)	1138, 1644, 1755, 1797
PspN4I	GGNNCC	4 cut(s)	220, 907, 1222, 2252
PspPI	GGNCC	6 cut(s)	984, 1017, 1467, 1795, 2251, 2281
PspPPI	RGGWCCY	1 cut(s)	1017
PstI	CTGCAG	2 cut(s)	1431, 1440
PstNI	CAGNNNCTG	3 cut(s)	65, 968, 1435
PsuI	RGATCY	1 cut(s)	628
PteI	GCGCGC	1 cut(s)	2337
PvuII	CAGCTG	1 cut(s)	1745
RsaI	GTAC	6 cut(s)	19, 338, 506, 616, 1209, 1222
RsaNI	GTAC	6 cut(s)	18, 337, 505, 615, 1208, 1221
RseI	CAYNNNNRTG	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	1905
SaqAI	TTAA	6 cut(s)	6, 698, 1524, 2003, 2237, 2417
Sau3AI	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 2025, 2070, 2430
Sau96I	GGNCC	6 cut(s)	984, 1017, 1467, 1795, 2251, 2281
SchI	GAGTC	4 cut(s)	392, 1291, 1961, 2111
ScrFI	CCNGG	7 cut(s)	1140, 1423, 1646, 1757, 1799, 2248, 2249
SduI	GDGCHC	2 cut(s)	174, 908
SfaNI	GCATC	7 cut(s)	27, 220, 1356, 1646, 2137, 2350, 2383
SfcI	CTRYAG	4 cut(s)	102, 1427, 1436, 1734
SfuI	TTCGAA	1 cut(s)	973
SinI	GGWCC	5 cut(s)	984, 1017, 1795, 2251, 2281
SmaI	CCCGGG	1 cut(s)	2249
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	5 cut(s)	437, 661, 1700, 2081, 2122
SmoI	CTYRAG	5 cut(s)	437, 661, 1700, 2081, 2122
SnaBI	TACGTA	1 cut(s)	385
SphI	GCATGC	2 cut(s)	261, 1625
SsiI	CCGC	7 cut(s)	319, 375, 390, 563, 982, 1553, 2284
StyD4I	CCNGG	7 cut(s)	1138, 1421, 1644, 1755, 1797, 2246, 2247
StyI	CCWWGG	2 cut(s)	31, 987
TaaI	ACNGT	4 cut(s)	187, 341, 1207, 1340
TaiI	ACGT	2 cut(s)	387, 498
TaqI	TCGA	1 cut(s)	973
TatI	WGTACW	2 cut(s)	504, 614
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	4 cut(s)	680, 1157, 1271, 1739
Tru1I	TTAA	6 cut(s)	6, 698, 1524, 2003, 2237, 2417
Tru9I	TTAA	6 cut(s)	6, 698, 1524, 2003, 2237, 2417
TscAI	CASTG	6 cut(s)	346, 532, 1536, 1791, 1965, 2325
TseFI	GTSAC	2 cut(s)	590, 762
Tsp45I	GTSAC	2 cut(s)	590, 762
TspGWI	ACGGA	2 cut(s)	172, 731
TspMI	CCCGGG	1 cut(s)	2247
TspRI	CASTG	6 cut(s)	346, 532, 1536, 1791, 1965, 2325
VpaK11BI	GGWCC	5 cut(s)	984, 1017, 1795, 2251, 2281
XagI	CCTNNNNNAGG	2 cut(s)	1215, 2306
XapI	RAATTY	5 cut(s)	431, 748, 809, 1559, 2242
XbaI	TCTAGA	2 cut(s)	149, 368
XceI	RCATGY	3 cut(s)	261, 1625, 2053
XmaI	CCCGGG	1 cut(s)	2247
XmiI	GTMKAC	1 cut(s)	1498
Zsp2I	ATGCAT	2 cut(s)	1627, 1639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.