Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8382791.1

Orthogroup ID

OG0002982

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 718

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8382791.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ctgaaagcagaaagcaatctgcagaaatacaaagatgatattcagaatctcgataaagaaatctcccagttgagactcaagagtgattcttcgaagattgcagcccttcggaggggtgtagatggaagttatgccagcaaggtatcagacgttgaaaatagtctggatcagaagggctcccagatgccatatatctcagaagtagtgaaggatttgcacgactactctgagacaggaggggtgaaacgcgaaagggagtgtgtgatgtgcctctccgaggaaatgtctgtggttttcctcccatgtgcccatcaagtggtctgcagaacttgcaatgagctccatgaaaaacagggtatgaaggactgtccgtcgtgcaggagccccatacaatggcgtatttct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

135

Amino Acids

15.29

Weight (kDa)

6.35

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03365 AT1G03365 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000
fragaria_vesca	FvH4_2g24221 FvH4_2g24221 FvH4_2g24221
malus_domestica	MD03G1272000.v1.1 MD11G1292600.v1.1
prunus_persica	Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1
pyrus_communis	pycom03g21660 pycom11g25900
rosa_chinensis	RchiOBHm_Chr6g0292011
rosa_laevigata	RLG00000012070
rosa_multiflora	Rmu_co8265653.1_g000001 Rmu_co8382791.1_g000001 Rmu_sc0008666.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175490 Rroxscaffold_7G00178030
rosa_rugosa	Rorug06G0222500 Rorug06G0222600 Rorug06G0222700 Rorug06G0222800 Rorug06G0222900
rosa_samantha	Rh6AG336400 Rh6BG343700 Rh6CG350000 Rh6DG336700
rosa_wichuraiana	Rw6G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	316, 393
AccII	CGCG	1 cut(s)	249
AclWI	GGATC	1 cut(s)	174
AfiI	CCNNNNNNNGG	5 cut(s)	111, 112, 277, 316, 393
AgsI	TTSAA	1 cut(s)	155
AhdI	GACNNNNNGTC	1 cut(s)	370
AluBI	AGCT	1 cut(s)	340
AluI	AGCT	1 cut(s)	340
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	2 cut(s)	67, 224
AlwI	GGATC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	253
AsuII	TTCGAA	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	310
BanII	GRGCYC	3 cut(s)	179, 342, 386
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	2 cut(s)	116, 318
BcoDI	GTCTC	2 cut(s)	67, 224
BfmI	CTRYAG	2 cut(s)	20, 322
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmiI	GGNNCC	2 cut(s)	178, 383
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	61
Bpu14I	TTCGAA	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 112, 277, 316, 393
Bse1I	ACTGG	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	276
BseLI	CCNNNNNNNGG	5 cut(s)	111, 112, 277, 316, 393
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	2 cut(s)	210, 219
BseNI	ACTGG	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	342
BslI	CCNNNNNNNGG	5 cut(s)	111, 112, 277, 316, 393
BsmAI	GTCTC	2 cut(s)	67, 224
Bsp119I	TTCGAA	1 cut(s)	92
Bsp1286I	GDGCHC	4 cut(s)	179, 310, 342, 386
Bsp143I	GATC	1 cut(s)	166
BspCNI	CTCAG	2 cut(s)	209, 220
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	178, 383
BspMAI	CTGCAG	2 cut(s)	24, 326
BspPI	GGATC	1 cut(s)	174
BspT104I	TTCGAA	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	368
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	196, 228
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	2 cut(s)	67, 224
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstSFI	CTRYAG	2 cut(s)	20, 322
BstSLI	GKGCMC	1 cut(s)	310
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	136
CviAII	CATG	2 cut(s)	303, 344
CviJI	RGCY	4 cut(s)	104, 177, 340, 384
CviKI_1	RGCY	4 cut(s)	104, 177, 340, 384
DdeI	CTNAG	2 cut(s)	196, 228
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DriI	GACNNNNNGTC	1 cut(s)	370
Eam1105I	GACNNNNNGTC	1 cut(s)	370
Ecl136II	GAGCTC	1 cut(s)	340
Eco24I	GRGCYC	3 cut(s)	179, 342, 386
Eco53kI	GAGCTC	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	340
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoT38I	GRGCYC	3 cut(s)	179, 342, 386
FaeI	CATG	2 cut(s)	306, 347
FaiI	YATR	7 cut(s)	132, 190, 192, 304, 345, 359, 389
FatI	CATG	2 cut(s)	302, 343
Fnu4HI	GCNGC	1 cut(s)	102
FriOI	GRGCYC	3 cut(s)	179, 342, 386
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	306, 347
HinfI	GANTC	3 cut(s)	46, 75, 86
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	7 cut(s)	45, 111, 148, 171, 199, 229, 277
Hpy188III	TCNNGA	3 cut(s)	50, 79, 164
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	4 cut(s)	116, 166, 202, 355
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	6 cut(s)	22, 101, 217, 324, 333, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	2 cut(s)	196, 228
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	306, 347
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	3 cut(s)	182, 345, 381
LpnPI	CCDG	7 cut(s)	80, 148, 149, 194, 219, 338, 364
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	1 cut(s)	174
MaeII	ACGT	1 cut(s)	150
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	81, 106
MhlI	GDGCHC	4 cut(s)	179, 310, 342, 386
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	5 cut(s)	105, 230, 271, 281, 308
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	330
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	306, 347
NlaIV	GGNNCC	2 cut(s)	178, 383
NspV	TTCGAA	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	46, 86
PflMI	CCANNNNNTGG	2 cut(s)	316, 393
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	178, 383
PstI	CTGCAG	2 cut(s)	24, 326
SacI	GAGCTC	1 cut(s)	342
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	69
SduI	GDGCHC	4 cut(s)	179, 310, 342, 386
SetI	ASST	3 cut(s)	144, 153, 342
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	2 cut(s)	20, 322
SfuI	TTCGAA	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	51, 92
TfiI	GAWTC	2 cut(s)	46, 86
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	360, 374
TspGWI	ACGGA	1 cut(s)	360
Van91I	CCANNNNNTGG	2 cut(s)	316, 393
XagI	CCTNNNNNAGG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.