Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002982

Physical Location & Seq

Genomic Coordinates Forward (+)

17683541 .. 17687469

Gene Structure 3929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2478 bp

ATGAAGAAAATGGTTAATAGTGGTGGTACTGGCAGCAACCAAGGGATGTCGTTAGAGAAGAGACGAGAGAAGACTAAACCAGTAGCTGTTTGTTCTATAAAGAAAAAGCTAGCTGAAGCTGCTGTAGTGAGTATAAGTAACCATTTGAGTGAAGCACCTCTGGAGATATCTAGAAAACGGAGTGAACCTGAGCCCGTAGAGGCTACGGTGGTTCAGCCTAAGGAGGAAGTGCAAACGGGAGCCGTTGAAGAAGGTAAAGATTGGGATGATCCCATTGCATGCCAGCTTGAAGAACTATTGTTGTCTTATTTGCAAGCAATTTTCCAGAGTGCAATCAAGCGGATTACTGAATGTGGGTACAGTGAGGAGGTTGCTGTGAAGGCTGTTTCTAGAGGCGGCCTTTACGTAGGCGGTAAAGACTCTGTATTGAACATTGTAAATGATACTCTGGAATTTCTCAAGGGAGGGAAGGATACTGATGCTTCAAGAGAAAATGAGTTTGATAATTTGCAGCACGTGGTGGAGTACACAATGCTAGAAATGATCAGTGTGCTTAGGGAGGTCAGGCCATCCTTATCAGTTGCAGAAGCAATGTGGTGGTTACTGATATGTGACCTAAACATTTTGCTAGCCTGTACAATGGAAGGAGATCTATCAAGTGTTCTTGCTTTTGAAGAAGCCTCAAGCGAAAGCTCCTCTGATTCTTCCTCTTCCCAGTTAAAATCAGAGGCAAATACTGAAATGAACCATCCAAATCCTAGCAATGCAAATTCCTCAAAGCCGTCACTTCCCAACTCTCAAAACCATCGTTCTCTCTCTGAAACACTCAAATTTGGAAGTTTCCCAAACTCTGCTAACCCTGAAACGCCAGAAGCCAAGGAAGAGAGTTTGTCATCTATGCTAGATAGTTTGGAGAAATGTTTGGGCTCCACAAAGGATTATGTCCTATCTTCATCTCAGACATCTACCTCTGAAGAAAAATCAGGAGCTGTTCGAAAGGGGCGGACCAAGGCAGAATTAGCAGCACTTCGGAAGAGGTCCTTCCAGATGGAGAGAAATTACAGGGCTTATAGGTCAAAAGGAGGCTTCAAATCGGGGAAGCTCGCTGCATTTGGTAGTTTTGTTATGGAAAAGAGGCCAAAGCCTCCATCTGATCTTCCTGGAGCTCGCACAAAAGATTCCTCATCAAAGGTAACTGGTTCATCTGCAAGAGGTTGCTCGTTAACAGTACCTTCAAAAGGTACCACATCTTCTTTGCCTTCTGTGGATACCAAGCAGAAACAGAAGTCTGATTCAGAAGAAAAATCTGACACTAAGACTCCAGTCAGCACCTCTCTTCCACCCAAGACTATTGATTACTGTGCTGGCATCCCATATGATAAGTCTCTAGGGAAGTATGTCCCACAAGATAAGAAGGATGAGCTGATTTTGAAGCTAGTTCCCCGGCTGCAGAAGCTGCAGGATGAGCTACAGAGTTGGACAGAGTGGGCCAATGAGAAGGTTATGCAGGTTTCTCGTAGACTTGGTAAAGAACGACCTGAACTTAAAGCACTGAGGCAAGAGAAGGAAGAAGCGGGGAAATTTGAAAAGGAGAAACAAGTGGTGGAAGAGAATACCATGAAGAGGCTGTTTGAGATGGAGCATGCATTGAATAATGCATCCAGCCAGGTTGAGAGTGCTAACTCAACTATCTCTAGGCTTCAGGTGAATAATTCCACTCTCAAGCAGCAGTTGAGCTCTGCGAAAATAATGGCTATAGAATCAGCTGCTAATCTCCAGGAAGCATTAGAGAGGGAGAATAAAGCACTGAAAAAGGTCCAGGCATGGGAGGGGCAGAAGGGTTCATTGCAGGAGGAGCTTGAAACAAAAAAGAACAAGGTGGCTGCACTTCAACAGGATTTAGGCAAGGCAAAAAATGCTCTTCATCAAATTGAGGCCAGATGGAAGCGGGAGATAATGGAAAAGGAAACAATACTCGCACAGGCTGACTCTATGAGAAATGAAAGAGAACAGCGTGAAGCTTTAACACAAGTGGAGGAGGCCAACATCAAACACAAGGCCGAAGATGACATGCAGAAGTATGTGGATGAGATCAAATTACTTGAGAGCAAGTTATCTGAACTTCAAACAAAATCTGACTCCTCAAGAATAGCAGCGCTAAGAAGGGATGCTGCTGGAAGCTTTGGGGCTTGCCTGTCAGACAGAAAAAATGTGAAGCCTACTAAGAGAAGCCAAAGTTCTACCAGCTTCAAGAAGTTAACAAATTCCCGGGACCATTTGGGGACTGAAAGTTTGAGACAGGACCGCGAGTGCGTGATGTGCCTATCTGAGGAGATGTCAGTGGTTTTCCTCCCGTGCGCGCATCAGGTTGTCTGTGCAAAATGCAATGAGCTGCATCTGAAACAAGGAATGAAAGACTGCCCTTCTTGTAGGGCTTTAATTCAGCGAAGGATCAAAGTACAATATGCTTGTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

825

Amino Acids

91.64

Weight (kDa)

8.43

Isoelectric Point (pI)

59.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIR2-like_helical	PF20235	104 - 215	2.1e-21	PIR2-like, helical domain
zf-C3HC4_3	PF13920	768 - 816	2e-11	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03365 AT1G03365 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000
fragaria_vesca	FvH4_2g24221 FvH4_2g24221 FvH4_2g24221
malus_domestica	MD03G1272000.v1.1 MD11G1292600.v1.1
prunus_persica	Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1
pyrus_communis	pycom03g21660 pycom11g25900
rosa_chinensis	RchiOBHm_Chr6g0292011
rosa_laevigata	RLG00000012070
rosa_multiflora	Rmu_co8265653.1_g000001 Rmu_co8382791.1_g000001 Rmu_sc0008666.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175490 Rroxscaffold_7G00178030
rosa_rugosa	Rorug06G0222500 Rorug06G0222600 Rorug06G0222700 Rorug06G0222800 Rorug06G0222900
rosa_samantha	Rh6AG336400 Rh6BG343700 Rh6CG350000 Rh6DG336700
rosa_wichuraiana	Rw6G029280

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1498
Acc65I	GGTACC	1 cut(s)	1241
AccB1I	GGYRCC	1 cut(s)	1241
AccI	GTMKAC	1 cut(s)	1519
AccII	CGCG	2 cut(s)	2307, 2360
AciI	CCGC	7 cut(s)	340, 396, 411, 1003, 1574, 1948, 2305
AclWI	GGATC	2 cut(s)	263, 2459
AcsI	RAATTY	5 cut(s)	452, 769, 830, 1580, 2263
AcuI	CTGAAG	3 cut(s)	135, 993, 1685
AcvI	CACGTG	1 cut(s)	517
AdeI	CACNNNGTG	1 cut(s)	520
AfaI	GTAC	7 cut(s)	28, 359, 527, 637, 1230, 1243, 2460
AfeI	AGCGCT	1 cut(s)	2157
AfiI	CCNNNNNNNGG	4 cut(s)	1238, 1623, 1825, 2329
AjnI	CCWGG	4 cut(s)	1159, 1665, 1776, 1818
Alw21I	GWGCWC	2 cut(s)	1168, 1739
Alw26I	GTCTC	3 cut(s)	55, 1389, 2290
AlwI	GGATC	2 cut(s)	263, 2459
AlwNI	CAGNNNCTG	3 cut(s)	86, 989, 1456
Ama87I	CYCGRG	1 cut(s)	2268
Aor51HI	AGCGCT	1 cut(s)	2157
AoxI	GGCC	7 cut(s)	397, 566, 1136, 1488, 1935, 2040, 2058
ApoI	RAATTY	5 cut(s)	452, 769, 830, 1580, 2263
ArsI	GACNNNNNNTTYG	2 cut(s)	2275, 2307
Asp718I	GGTACC	1 cut(s)	1241
AspLEI	GCGC	3 cut(s)	2158, 2360, 2362
AspS9I	GGNCC	6 cut(s)	1005, 1038, 1488, 1816, 2272, 2302
AsuC2I	CCSGG	3 cut(s)	1444, 2269, 2270
AsuHPI	GGTGA	1 cut(s)	1717
AsuII	TTCGAA	1 cut(s)	994
AsuNHI	GCTAGC	2 cut(s)	109, 628
AvaI	CYCGRG	1 cut(s)	2268
AvaII	GGWCC	5 cut(s)	1005, 1038, 1816, 2272, 2302
AxyI	CCTNAGG	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	1241
BanII	GRGCYC	4 cut(s)	195, 929, 1168, 1739
BarI	GAAGNNNNNNTAC	2 cut(s)	1234, 1266
BbrPI	CACGTG	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	1168, 1739
BccI	CCATC	7 cut(s)	577, 756, 813, 1042, 1156, 1630, 1935
BceAI	ACGGC	2 cut(s)	227, 766
BcgI	CGANNNNNNTGC	2 cut(s)	1496, 1530
BciT130I	CCWGG	4 cut(s)	1161, 1667, 1778, 1820
BciVI	GTATCC	2 cut(s)	466, 1261
BclI	TGATCA	1 cut(s)	543
BcnI	CCSGG	3 cut(s)	1444, 2269, 2270
BcoDI	GTCTC	3 cut(s)	55, 1389, 2290
BfmI	CTRYAG	5 cut(s)	123, 1448, 1457, 1469, 1755
BfoI	RGCGCY	1 cut(s)	2159
BfuAI	ACCTGC	1 cut(s)	1498
BfuI	GTATCC	2 cut(s)	466, 1261
BglII	AGATCT	1 cut(s)	649
Bme1390I	CCNGG	7 cut(s)	1161, 1444, 1667, 1778, 1820, 2269, 2270
Bme18I	GGWCC	5 cut(s)	1005, 1038, 1816, 2272, 2302
BmeT110I	CYCGRG	1 cut(s)	2268
BmgT120I	GGNCC	6 cut(s)	1005, 1038, 1488, 1816, 2272, 2302
BmiI	GGNNCC	4 cut(s)	241, 928, 1243, 2273
BmrFI	CCNGG	7 cut(s)	1161, 1444, 1667, 1778, 1820, 2269, 2270
BmrI	ACTGGG	1 cut(s)	709
BmsI	GCATC	6 cut(s)	469, 1377, 1667, 2158, 2371, 2404
BmtI	GCTAGC	2 cut(s)	113, 632
BmuI	ACTGGG	1 cut(s)	709
BoxI	GACNNNNGTC	1 cut(s)	1322
BpiI	GAAGAC	1 cut(s)	77
BpmI	CTGGAG	4 cut(s)	182, 1182, 1305, 1760
Bpu10I	CCTNAGC	2 cut(s)	189, 554
Bpu14I	TTCGAA	1 cut(s)	994
BpuEI	CTTGAG	5 cut(s)	443, 667, 1706, 2123, 2128
BpuMI	CCSGG	3 cut(s)	1444, 2269, 2270
BsaAI	YACGTR	2 cut(s)	406, 517
BsaJI	CCNNGG	5 cut(s)	40, 876, 1008, 1442, 2268
BsaXI	ACNNNNNCTCC	2 cut(s)	1303, 1333
Bsc4I	CCNNNNNNNGG	4 cut(s)	1238, 1623, 1825, 2329
Bse1I	ACTGG	5 cut(s)	34, 80, 715, 1201, 1322
Bse21I	CCTNAGG	1 cut(s)	219
Bse3DI	GCAATG	5 cut(s)	273, 597, 769, 1844, 2392
BseBI	CCWGG	4 cut(s)	1161, 1667, 1778, 1820
BseDI	CCNNGG	5 cut(s)	40, 876, 1008, 1442, 2268
BseLI	CCNNNNNNNGG	4 cut(s)	1238, 1623, 1825, 2329
BseMI	GCAATG	5 cut(s)	273, 597, 769, 1844, 2392
BseMII	CTCAG	4 cut(s)	180, 971, 1544, 2319
BseNI	ACTGG	5 cut(s)	34, 80, 715, 1201, 1322
BsePI	GCGCGC	1 cut(s)	2358
BseRI	GAGGAG	6 cut(s)	380, 685, 1868, 2051, 2131, 2345
BsgI	GTGCAG	1 cut(s)	1869
Bsh1236I	CGCG	2 cut(s)	2307, 2360
BshFI	GGCC	7 cut(s)	399, 568, 1138, 1490, 1937, 2042, 2060
BshNI	GGYRCC	1 cut(s)	1241
BsiHKAI	GWGCWC	2 cut(s)	1168, 1739
BsiHKCI	CYCGRG	1 cut(s)	2268
BsiSI	CCGG	2 cut(s)	1444, 2269
BslFI	GGGAC	3 cut(s)	1385, 2285, 2296
BslI	CCNNNNNNNGG	4 cut(s)	1238, 1623, 1825, 2329
BsmAI	GTCTC	3 cut(s)	55, 1389, 2290
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	3 cut(s)	1385, 2285, 2296
BsnI	GGCC	7 cut(s)	399, 568, 1138, 1490, 1937, 2042, 2060
BsoBI	CYCGRG	1 cut(s)	2268
Bsp119I	TTCGAA	1 cut(s)	994
Bsp1286I	GDGCHC	4 cut(s)	195, 929, 1168, 1739
Bsp1407I	TGTACA	1 cut(s)	635
Bsp143I	GATC	6 cut(s)	268, 543, 649, 1153, 2091, 2451
BspACI	CCGC	7 cut(s)	340, 396, 411, 1003, 1574, 1948, 2305
BspANI	GGCC	7 cut(s)	399, 568, 1138, 1490, 1937, 2042, 2060
BspCNI	CTCAG	4 cut(s)	181, 970, 1545, 2320
BspFNI	CGCG	2 cut(s)	2307, 2360
BspLI	GGNNCC	4 cut(s)	241, 928, 1243, 2273
BspMAI	CTGCAG	2 cut(s)	1452, 1461
BspMI	ACCTGC	1 cut(s)	1498
BspOI	GCTAGC	2 cut(s)	113, 632
BspPI	GGATC	2 cut(s)	263, 2459
BspQI	GCTCTTC	1 cut(s)	1926
BspT104I	TTCGAA	1 cut(s)	994
BspT107I	GGYRCC	1 cut(s)	1241
BsrDI	GCAATG	5 cut(s)	273, 597, 769, 1844, 2392
BsrGI	TGTACA	1 cut(s)	635
BsrI	ACTGG	5 cut(s)	34, 80, 715, 1201, 1322
BssECI	CCNNGG	5 cut(s)	40, 876, 1008, 1442, 2268
BssHII	GCGCGC	1 cut(s)	2358
BssMI	GATC	6 cut(s)	268, 543, 649, 1153, 2091, 2451
BssT1I	CCWWGG	3 cut(s)	40, 876, 1008
Bst2UI	CCWGG	4 cut(s)	1161, 1667, 1778, 1820
Bst4CI	ACNGT	4 cut(s)	208, 362, 1228, 1361
Bst6I	CTCTTC	8 cut(s)	53, 715, 876, 1028, 1341, 1602, 1616, 1926
BstAPI	GCANNNNNTGC	2 cut(s)	1456, 1916
BstAUI	TGTACA	1 cut(s)	635
BstBAI	YACGTR	2 cut(s)	406, 517
BstBI	TTCGAA	1 cut(s)	994
BstDEI	CTNAG	9 cut(s)	189, 219, 554, 957, 1314, 1553, 2159, 2223, 2328
BstENI	CCTNNNNNAGG	2 cut(s)	1236, 2327
BstFNI	CGCG	2 cut(s)	2307, 2360
BstH2I	RGCGCY	1 cut(s)	2159
BstHHI	GCGC	3 cut(s)	2158, 2360, 2362
BstKTI	GATC	6 cut(s)	271, 546, 652, 1156, 2094, 2454
BstMAI	GTCTC	3 cut(s)	55, 1389, 2290
BstMBI	GATC	6 cut(s)	268, 543, 649, 1153, 2091, 2451
BstMWI	GCNNNNNNNGC	9 cut(s)	119, 380, 1019, 1453, 1456, 1465, 1855, 1916, 2319
BstNI	CCWGG	4 cut(s)	1161, 1667, 1778, 1820
BstNSI	RCATGY	3 cut(s)	282, 1646, 2074
BstPAI	GACNNNNGTC	1 cut(s)	1322
BstSCI	CCNGG	7 cut(s)	1159, 1442, 1665, 1776, 1818, 2267, 2268
BstSFI	CTRYAG	5 cut(s)	123, 1448, 1457, 1469, 1755
BstSNI	TACGTA	1 cut(s)	406
BstUI	CGCG	2 cut(s)	2307, 2360
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
Bsu36I	CCTNAGG	1 cut(s)	219
BsuI	GTATCC	2 cut(s)	466, 1261
BsuRI	GGCC	7 cut(s)	399, 568, 1138, 1490, 1937, 2042, 2060
BtsIMutI	CAGTG	5 cut(s)	367, 553, 1550, 1805, 2346
BveI	ACCTGC	1 cut(s)	1498
CaiI	CAGNNNCTG	3 cut(s)	86, 989, 1456
CfoI	GCGC	3 cut(s)	2158, 2360, 2362
Cfr13I	GGNCC	6 cut(s)	1005, 1038, 1488, 1816, 2272, 2302
Cfr9I	CCCGGG	1 cut(s)	2268
Csp6I	GTAC	7 cut(s)	27, 358, 526, 636, 1229, 1242, 2459
CviAII	CATG	5 cut(s)	279, 1618, 1643, 1824, 2071
CviQI	GTAC	7 cut(s)	27, 358, 526, 636, 1229, 1242, 2459
DdeI	CTNAG	9 cut(s)	189, 219, 554, 957, 1314, 1553, 2159, 2223, 2328
DpnI	GATC	6 cut(s)	270, 545, 651, 1155, 2093, 2453
DpnII	GATC	6 cut(s)	268, 543, 649, 1153, 2091, 2451
DraIII	CACNNNGTG	1 cut(s)	520
Eam1104I	CTCTTC	8 cut(s)	53, 715, 876, 1028, 1341, 1602, 1616, 1926
EarI	CTCTTC	8 cut(s)	53, 715, 876, 1028, 1341, 1602, 1616, 1926
EciI	GGCGGA	1 cut(s)	1018
Ecl136II	GAGCTC	2 cut(s)	1166, 1737
Eco105I	TACGTA	1 cut(s)	406
Eco130I	CCWWGG	3 cut(s)	40, 876, 1008
Eco24I	GRGCYC	4 cut(s)	195, 929, 1168, 1739
Eco32I	GATATC	1 cut(s)	168
Eco47I	GGWCC	5 cut(s)	1005, 1038, 1816, 2272, 2302
Eco47III	AGCGCT	1 cut(s)	2157
Eco53kI	GAGCTC	2 cut(s)	1166, 1737
Eco57I	CTGAAG	3 cut(s)	135, 993, 1685
Eco72I	CACGTG	1 cut(s)	517
Eco81I	CCTNAGG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	2268
EcoICRI	GAGCTC	2 cut(s)	1166, 1737
EcoNI	CCTNNNNNAGG	2 cut(s)	1236, 2327
EcoO109I	RGGNCCY	1 cut(s)	1038
EcoRII	CCWGG	4 cut(s)	1159, 1665, 1776, 1818
EcoRV	GATATC	1 cut(s)	168
EcoT14I	CCWWGG	3 cut(s)	40, 876, 1008
EcoT22I	ATGCAT	2 cut(s)	1648, 1660
EcoT38I	GRGCYC	4 cut(s)	195, 929, 1168, 1739
ErhI	CCWWGG	3 cut(s)	40, 876, 1008
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	5 cut(s)	282, 1621, 1646, 1827, 2074
FalI	AAGNNNNNCTT	2 cut(s)	1025, 1057
FaqI	GGGAC	3 cut(s)	1385, 2285, 2296
FatI	CATG	5 cut(s)	278, 1617, 1642, 1823, 2070
FauI	CCCGC	2 cut(s)	1567, 1941
FauNDI	CATATG	1 cut(s)	1375
FbaI	TGATCA	1 cut(s)	543
FblI	GTMKAC	1 cut(s)	1519
FriOI	GRGCYC	4 cut(s)	195, 929, 1168, 1739
GlaI	GCGC	3 cut(s)	2157, 2359, 2361
GsuI	CTGGAG	4 cut(s)	182, 1182, 1305, 1760
HaeII	RGCGCY	1 cut(s)	2159
HaeIII	GGCC	7 cut(s)	399, 568, 1138, 1490, 1937, 2042, 2060
HapII	CCGG	2 cut(s)	1444, 2269
HhaI	GCGC	3 cut(s)	2158, 2360, 2362
Hin1II	CATG	5 cut(s)	282, 1621, 1646, 1827, 2074
Hin6I	GCGC	3 cut(s)	2156, 2358, 2360
HinP1I	GCGC	3 cut(s)	2156, 2358, 2360
HincII	GTYRAC	2 cut(s)	1224, 2259
HindII	GTYRAC	2 cut(s)	1224, 2259
HindIII	AAGCTT	2 cut(s)	2019, 2179
HinfI	GANTC	8 cut(s)	419, 701, 1178, 1292, 1318, 1760, 1988, 2138
HpaI	GTTAAC	2 cut(s)	1224, 2259
HpaII	CCGG	2 cut(s)	1444, 2269
HphI	GGTGA	1 cut(s)	1717
Hpy166II	GTNNAC	5 cut(s)	185, 528, 1224, 1520, 2259
Hpy8I	GTNNAC	5 cut(s)	185, 528, 1224, 1520, 2259
HpyCH4III	ACNGT	4 cut(s)	208, 362, 1228, 1361
HpyCH4IV	ACGT	2 cut(s)	405, 516
HpyF10VI	GCNNNNNNNGC	9 cut(s)	119, 380, 1019, 1453, 1456, 1465, 1855, 1916, 2319
HpyF3I	CTNAG	9 cut(s)	189, 219, 554, 957, 1314, 1553, 2159, 2223, 2328
HpySE526I	ACGT	2 cut(s)	405, 516
Hsp92II	CATG	5 cut(s)	282, 1621, 1646, 1827, 2074
HspAI	GCGC	3 cut(s)	2156, 2358, 2360
KpnI	GGTACC	1 cut(s)	1245
Ksp22I	TGATCA	1 cut(s)	543
KspAI	GTTAAC	2 cut(s)	1224, 2259
Kzo9I	GATC	6 cut(s)	268, 543, 649, 1153, 2091, 2451
LguI	GCTCTTC	1 cut(s)	1926
LmnI	GCTCC	7 cut(s)	239, 698, 932, 986, 1163, 1639, 1855
LweI	GCATC	6 cut(s)	469, 1377, 1667, 2158, 2371, 2404
MaeII	ACGT	2 cut(s)	405, 516
MaeIII	GTNAC	5 cut(s)	137, 600, 611, 783, 1192
MalI	GATC	6 cut(s)	270, 545, 651, 1155, 2093, 2453
MboI	GATC	6 cut(s)	268, 543, 649, 1153, 2091, 2451
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	4 cut(s)	195, 929, 1168, 1739
MlyI	GAGTC	4 cut(s)	413, 1312, 1982, 2132
MmeI	TCCRAC	1 cut(s)	1457
Mph1103I	ATGCAT	2 cut(s)	1648, 1660
MseI	TTAA	7 cut(s)	15, 719, 1223, 1545, 2024, 2258, 2438
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	1766
MspI	CCGG	2 cut(s)	1444, 2269
MspR9I	CCNGG	7 cut(s)	1161, 1444, 1667, 1778, 1820, 2269, 2270
MvaI	CCWGG	4 cut(s)	1161, 1667, 1778, 1820
MvnI	CGCG	2 cut(s)	2307, 2360
MwoI	GCNNNNNNNGC	9 cut(s)	119, 380, 1019, 1453, 1456, 1465, 1855, 1916, 2319
NciI	CCSGG	3 cut(s)	1444, 2269, 2270
NdeI	CATATG	1 cut(s)	1375
NdeII	GATC	6 cut(s)	268, 543, 649, 1153, 2091, 2451
NheI	GCTAGC	2 cut(s)	109, 628
NlaIII	CATG	5 cut(s)	282, 1621, 1646, 1827, 2074
NlaIV	GGNNCC	4 cut(s)	241, 928, 1243, 2273
NmuCI	GTSAC	2 cut(s)	611, 783
NsiI	ATGCAT	2 cut(s)	1648, 1660
NspI	RCATGY	3 cut(s)	282, 1646, 2074
NspV	TTCGAA	1 cut(s)	994
PaeI	GCATGC	2 cut(s)	282, 1646
PauI	GCGCGC	1 cut(s)	2358
PciSI	GCTCTTC	1 cut(s)	1926
PfeI	GAWTC	4 cut(s)	701, 1178, 1292, 1760
PfoI	TCCNGGA	2 cut(s)	1159, 1776
PleI	GAGTC	4 cut(s)	413, 1312, 1982, 2132
PmaCI	CACGTG	1 cut(s)	517
PmlI	CACGTG	1 cut(s)	517
PpsI	GAGTC	4 cut(s)	413, 1312, 1982, 2132
Ppu21I	YACGTR	2 cut(s)	406, 517
PpuMI	RGGWCCY	1 cut(s)	1038
PshAI	GACNNNNGTC	1 cut(s)	1322
Psp124BI	GAGCTC	2 cut(s)	1168, 1739
Psp5II	RGGWCCY	1 cut(s)	1038
Psp6I	CCWGG	4 cut(s)	1159, 1665, 1776, 1818
PspCI	CACGTG	1 cut(s)	517
PspGI	CCWGG	4 cut(s)	1159, 1665, 1776, 1818
PspN4I	GGNNCC	4 cut(s)	241, 928, 1243, 2273
PspPI	GGNCC	6 cut(s)	1005, 1038, 1488, 1816, 2272, 2302
PspPPI	RGGWCCY	1 cut(s)	1038
PstI	CTGCAG	2 cut(s)	1452, 1461
PstNI	CAGNNNCTG	3 cut(s)	86, 989, 1456
PsuI	RGATCY	1 cut(s)	649
PteI	GCGCGC	1 cut(s)	2358
PvuII	CAGCTG	1 cut(s)	1766
RsaI	GTAC	7 cut(s)	28, 359, 527, 637, 1230, 1243, 2460
RsaNI	GTAC	7 cut(s)	27, 358, 526, 636, 1229, 1242, 2459
RseI	CAYNNNNRTG	1 cut(s)	147
SacI	GAGCTC	2 cut(s)	1168, 1739
SapI	GCTCTTC	1 cut(s)	1926
SaqAI	TTAA	7 cut(s)	15, 719, 1223, 1545, 2024, 2258, 2438
Sau3AI	GATC	6 cut(s)	268, 543, 649, 1153, 2091, 2451
Sau96I	GGNCC	6 cut(s)	1005, 1038, 1488, 1816, 2272, 2302
SchI	GAGTC	4 cut(s)	413, 1312, 1982, 2132
ScrFI	CCNGG	7 cut(s)	1161, 1444, 1667, 1778, 1820, 2269, 2270
SduI	GDGCHC	4 cut(s)	195, 929, 1168, 1739
SfaNI	GCATC	6 cut(s)	469, 1377, 1667, 2158, 2371, 2404
SfcI	CTRYAG	5 cut(s)	123, 1448, 1457, 1469, 1755
SfuI	TTCGAA	1 cut(s)	994
SinI	GGWCC	5 cut(s)	1005, 1038, 1816, 2272, 2302
SmaI	CCCGGG	1 cut(s)	2270
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	5 cut(s)	458, 682, 1721, 2102, 2143
SmoI	CTYRAG	5 cut(s)	458, 682, 1721, 2102, 2143
SnaBI	TACGTA	1 cut(s)	406
SphI	GCATGC	2 cut(s)	282, 1646
SsiI	CCGC	7 cut(s)	340, 396, 411, 1003, 1574, 1948, 2305
SstI	GAGCTC	2 cut(s)	1168, 1739
StyD4I	CCNGG	7 cut(s)	1159, 1442, 1665, 1776, 1818, 2267, 2268
StyI	CCWWGG	3 cut(s)	40, 876, 1008
TaaI	ACNGT	4 cut(s)	208, 362, 1228, 1361
TaiI	ACGT	2 cut(s)	408, 519
TaqI	TCGA	1 cut(s)	994
TatI	WGTACW	3 cut(s)	525, 635, 2458
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	4 cut(s)	701, 1178, 1292, 1760
Tru1I	TTAA	7 cut(s)	15, 719, 1223, 1545, 2024, 2258, 2438
Tru9I	TTAA	7 cut(s)	15, 719, 1223, 1545, 2024, 2258, 2438
TscAI	CASTG	5 cut(s)	367, 553, 1557, 1812, 2346
TseFI	GTSAC	2 cut(s)	611, 783
Tsp45I	GTSAC	2 cut(s)	611, 783
TspDTI	ATGAA	9 cut(s)	17, 758, 942, 1191, 1634, 1833, 1913, 2016, 2426
TspGWI	ACGGA	2 cut(s)	193, 2463
TspMI	CCCGGG	1 cut(s)	2268
TspRI	CASTG	5 cut(s)	367, 553, 1557, 1812, 2346
VpaK11BI	GGWCC	5 cut(s)	1005, 1038, 1816, 2272, 2302
XagI	CCTNNNNNAGG	2 cut(s)	1236, 2327
XapI	RAATTY	5 cut(s)	452, 769, 830, 1580, 2263
XbaI	TCTAGA	2 cut(s)	170, 389
XceI	RCATGY	3 cut(s)	282, 1646, 2074
XmaI	CCCGGG	1 cut(s)	2268
XmiI	GTMKAC	1 cut(s)	1519
Zsp2I	ATGCAT	2 cut(s)	1648, 1660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.