Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002982

Physical Location & Seq

Genomic Coordinates Forward (+)

35647950 .. 35649251

Gene Structure 1302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0222900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGATAGAGAACAAGATGAGTTGCAGTTCCTTGGTCTCTTTGGCATCTACAAAGAATCCTATAAGATTGTATACAAATGGAGAAAAATCTTCAGCCAAATCAGCTTGACCTTGATCCTCCCTTTGAGCTTCATCTTCCTGGCTCACATAGAAGTCTCCGACATCCTCTTCTTCAGGATCATCCACAACGAAAACGCCTTGGACGAAACGAGACCGGACACCGCTAGCTACAAGAAAATAGATGACGTCATCACCAAAGAATGGGTAACCTTCTGGCTCTTCAAGGCTGTTTACTTCACTTCCATGCTCATCTTCGGCCTCCTCTCCACCTCCGCCGTGGTATACACCATCGCATGCGTATACACCGCCAGGGAAATCACCTTCCGAAAGATCATGAGCGTCGTCCCAAGGGTCTGGAAGCGCGTGATGATCACCTTCTTGTGCACCTTCCTGGCTTTCTTCCTCTACAACTTAGTGGCAATAGTAGTCCTAATTGTTTGGGCAGTTCTCTTCCACAGCACACGCGGAGACAGCCCCGCCTTAGTCATAATTGGTTTGTTTTTATTGATCTTGTACGCTGTTGGGTTCGTGTACATGACCATAATCTGGCAACTGGCTAGCGTCGTCTCGGTGTTGGAAGAAACGAAAGGGATCAAAGCCATGATCAAGAGCAAGAAGCTACTCAGAGGGAACATGTGGGTGGCCTCAATCATCTTCTTGATGATCAATGTTTCAGCCTTCGTTATTCAGTATTCATTTCAAGTATTGGTTGTACGTGGATGGATGTTATTTGGGACGATGGGCAGGATAGGCTTCGGTGTTCTCTTATTGTTGTTGCTGCTTAAGTTGATTCTGTTTCTGCTGGTCATCCAAACGGTGCTTTACTTCGTCTGCAAATCTTACCACCATGAAAACATCGACAAGTCGGCCCTGTCGGATCACCTCGAGGTTATTTATCTGGGAGACTATGTTCCTCTGAAGTCTAAGGATGTTCAGCTCGAGCAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

336

Amino Acids

38.86

Weight (kDa)

9.14

Isoelectric Point (pI)

25.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03365 AT1G03365 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000
fragaria_vesca	FvH4_2g24221 FvH4_2g24221 FvH4_2g24221
malus_domestica	MD03G1272000.v1.1 MD11G1292600.v1.1
prunus_persica	Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1
pyrus_communis	pycom03g21660 pycom11g25900
rosa_chinensis	RchiOBHm_Chr6g0292011
rosa_laevigata	RLG00000012070
rosa_multiflora	Rmu_co8265653.1_g000001 Rmu_co8382791.1_g000001 Rmu_sc0008666.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175490 Rroxscaffold_7G00178030
rosa_rugosa	Rorug06G0222500 Rorug06G0222600 Rorug06G0222700 Rorug06G0222800 Rorug06G0222900
rosa_samantha	Rh6AG336400 Rh6BG343700 Rh6CG350000 Rh6DG336700
rosa_wichuraiana	Rw6G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	249
AbsI	CCTCGAGG	1 cut(s)	944
Acc36I	ACCTGC	1 cut(s)	994
AccB7I	CCANNNNNTGG	2 cut(s)	261, 606
AccI	GTMKAC	3 cut(s)	72, 342, 360
AccII	CGCG	2 cut(s)	423, 525
AciI	CCGC	5 cut(s)	222, 333, 366, 525, 537
AclWI	GGATC	4 cut(s)	109, 185, 659, 945
AcuI	CTGAAG	3 cut(s)	76, 157, 998
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	3 cut(s)	575, 593, 774
AfiI	CCNNNNNNNGG	2 cut(s)	261, 606
AflII	CTTAAG	1 cut(s)	842
AflIII	ACRYGT	1 cut(s)	693
AgsI	TTSAA	2 cut(s)	283, 761
AjnI	CCWGG	3 cut(s)	138, 368, 450
AloI	GAACNNNNNNTCC	2 cut(s)	954, 986
AluBI	AGCT	5 cut(s)	105, 129, 228, 679, 997
AluI	AGCT	5 cut(s)	105, 129, 228, 679, 997
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	6 cut(s)	41, 160, 205, 522, 631, 957
Alw44I	GTGCAC	1 cut(s)	442
AlwI	GGATC	4 cut(s)	109, 185, 659, 945
Ama87I	CYCGRG	2 cut(s)	944, 998
AoxI	GGCC	3 cut(s)	316, 702, 927
ApaLI	GTGCAC	1 cut(s)	442
ApeKI	GCWGC	1 cut(s)	838
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	928
AsuHPI	GGTGA	4 cut(s)	244, 370, 424, 932
AsuNHI	GCTAGC	2 cut(s)	224, 617
AvaI	CYCGRG	2 cut(s)	944, 998
BaeGI	GKGCMC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	1 cut(s)	825
BccI	CCATC	3 cut(s)	356, 774, 793
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	3 cut(s)	140, 370, 452
BclI	TGATCA	3 cut(s)	429, 663, 723
BcoDI	GTCTC	6 cut(s)	41, 160, 205, 522, 631, 957
BfaI	CTAG	2 cut(s)	225, 618
BfrI	CTTAAG	1 cut(s)	842
BfuAI	ACCTGC	1 cut(s)	994
BisI	GCNGC	1 cut(s)	839
BlsI	GCNGC	1 cut(s)	840
Bme1390I	CCNGG	3 cut(s)	140, 370, 452
BmeT110I	CYCGRG	2 cut(s)	944, 998
BmgT120I	GGNCC	1 cut(s)	928
BmrFI	CCNGG	3 cut(s)	140, 370, 452
BmsI	GCATC	1 cut(s)	54
BmtI	GCTAGC	2 cut(s)	228, 621
BsaAI	YACGTR	1 cut(s)	776
BsaHI	GRCGYC	1 cut(s)	246
BsaI	GGTCTC	2 cut(s)	41, 205
BsaJI	CCNNGG	5 cut(s)	31, 198, 336, 369, 407
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	954, 984
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 606
Bse1I	ACTGG	1 cut(s)	618
BseBI	CCWGG	3 cut(s)	140, 370, 452
BseDI	CCNNGG	5 cut(s)	31, 198, 336, 369, 407
BseGI	GGATG	6 cut(s)	162, 180, 785, 789, 867, 994
BseLI	CCNNNNNNNGG	2 cut(s)	261, 606
BseMII	CTCAG	1 cut(s)	697
BseNI	ACTGG	1 cut(s)	618
BseRI	GAGGAG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	825
Bsh1236I	CGCG	2 cut(s)	423, 525
BshFI	GGCC	3 cut(s)	318, 704, 929
BsiHKAI	GWGCWC	1 cut(s)	446
BsiHKCI	CYCGRG	2 cut(s)	944, 998
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	2 cut(s)	389, 808
BslI	CCNNNNNNNGG	2 cut(s)	261, 606
BsmAI	GTCTC	6 cut(s)	41, 160, 205, 522, 631, 957
BsmBI	CGTCTC	1 cut(s)	631
BsmFI	GGGAC	2 cut(s)	389, 808
BsnI	GGCC	3 cut(s)	318, 704, 929
Bso31I	GGTCTC	2 cut(s)	41, 205
BsoBI	CYCGRG	2 cut(s)	944, 998
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp1407I	TGTACA	1 cut(s)	591
Bsp143I	GATC	9 cut(s)	114, 177, 390, 429, 567, 651, 663, 723, 937
BspACI	CCGC	5 cut(s)	222, 333, 366, 525, 537
BspANI	GGCC	3 cut(s)	318, 704, 929
BspCNI	CTCAG	1 cut(s)	696
BspFNI	CGCG	2 cut(s)	423, 525
BspHI	TCATGA	1 cut(s)	393
BspMI	ACCTGC	1 cut(s)	994
BspOI	GCTAGC	2 cut(s)	228, 621
BspPI	GGATC	4 cut(s)	109, 185, 659, 945
BspQI	GCTCTTC	1 cut(s)	284
BspTI	CTTAAG	1 cut(s)	842
BspTNI	GGTCTC	2 cut(s)	41, 205
BsrGI	TGTACA	1 cut(s)	591
BsrI	ACTGG	1 cut(s)	618
BssECI	CCNNGG	5 cut(s)	31, 198, 336, 369, 407
BssMI	GATC	9 cut(s)	114, 177, 390, 429, 567, 651, 663, 723, 937
BssNAI	GTATAC	3 cut(s)	73, 343, 361
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	3 cut(s)	31, 198, 407
Bst1107I	GTATAC	3 cut(s)	73, 343, 361
Bst2UI	CCWGG	3 cut(s)	140, 370, 452
Bst4CI	ACNGT	1 cut(s)	877
Bst6I	CTCTTC	3 cut(s)	173, 284, 515
BstACI	GRCGYC	1 cut(s)	246
BstAFI	CTTAAG	1 cut(s)	842
BstAUI	TGTACA	1 cut(s)	591
BstBAI	YACGTR	1 cut(s)	776
BstC8I	GCNNGC	3 cut(s)	226, 355, 619
BstDEI	CTNAG	4 cut(s)	472, 541, 683, 984
BstDSI	CCRYGG	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	265
BstF5I	GGATG	6 cut(s)	162, 180, 785, 789, 867, 994
BstFNI	CGCG	2 cut(s)	423, 525
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	9 cut(s)	117, 180, 393, 432, 570, 654, 666, 726, 940
BstMAI	GTCTC	6 cut(s)	41, 160, 205, 522, 631, 957
BstMBI	GATC	9 cut(s)	114, 177, 390, 429, 567, 651, 663, 723, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 531, 810
BstNI	CCWGG	3 cut(s)	140, 370, 452
BstNSI	RCATGY	2 cut(s)	357, 697
BstPI	GGTNACC	1 cut(s)	265
BstSCI	CCNGG	3 cut(s)	138, 368, 450
BstSLI	GKGCMC	1 cut(s)	446
BstUI	CGCG	2 cut(s)	423, 525
BstV1I	GCAGC	1 cut(s)	825
BstXI	CCANNNNNNTGG	1 cut(s)	414
BstZ17I	GTATAC	3 cut(s)	73, 343, 361
BsuRI	GGCC	3 cut(s)	318, 704, 929
BtgI	CCRYGG	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	334
BtsCI	GGATG	6 cut(s)	162, 180, 785, 789, 867, 994
BveI	ACCTGC	1 cut(s)	994
Cac8I	GCNNGC	3 cut(s)	226, 355, 619
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	928
CseI	GACGC	2 cut(s)	388, 610
Csp6I	GTAC	3 cut(s)	574, 592, 773
CviAII	CATG	7 cut(s)	304, 354, 394, 595, 661, 694, 908
CviQI	GTAC	3 cut(s)	574, 592, 773
DdeI	CTNAG	4 cut(s)	472, 541, 683, 984
DpnI	GATC	9 cut(s)	116, 179, 392, 431, 569, 653, 665, 725, 939
DpnII	GATC	9 cut(s)	114, 177, 390, 429, 567, 651, 663, 723, 937
Eam1104I	CTCTTC	3 cut(s)	173, 284, 515
EarI	CTCTTC	3 cut(s)	173, 284, 515
EciI	GGCGGA	1 cut(s)	322
Eco130I	CCWWGG	3 cut(s)	31, 198, 407
Eco31I	GGTCTC	2 cut(s)	41, 205
Eco57I	CTGAAG	3 cut(s)	76, 157, 998
Eco88I	CYCGRG	2 cut(s)	944, 998
Eco91I	GGTNACC	1 cut(s)	265
EcoO65I	GGTNACC	1 cut(s)	265
EcoRII	CCWGG	3 cut(s)	138, 368, 450
EcoT14I	CCWWGG	3 cut(s)	31, 198, 407
ErhI	CCWWGG	3 cut(s)	31, 198, 407
Esp3I	CGTCTC	1 cut(s)	631
FaeI	CATG	7 cut(s)	307, 357, 397, 598, 664, 697, 911
FaqI	GGGAC	2 cut(s)	389, 808
FatI	CATG	7 cut(s)	303, 353, 393, 594, 660, 693, 907
FauI	CCCGC	1 cut(s)	544
FbaI	TGATCA	3 cut(s)	429, 663, 723
FblI	GTMKAC	3 cut(s)	72, 342, 360
Fnu4HI	GCNGC	1 cut(s)	839
FokI	GGATG	6 cut(s)	149, 167, 792, 796, 854, 1001
Fsp4HI	GCNGC	1 cut(s)	839
FspBI	CTAG	2 cut(s)	225, 618
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	1 cut(s)	839
HaeIII	GGCC	3 cut(s)	318, 704, 929
HapII	CCGG	1 cut(s)	215
HgaI	GACGC	2 cut(s)	388, 610
HhaI	GCGC	1 cut(s)	423
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	7 cut(s)	307, 357, 397, 598, 664, 697, 911
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	56, 850
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	4 cut(s)	244, 370, 424, 932
Hpy166II	GTNNAC	6 cut(s)	73, 292, 343, 361, 444, 592
Hpy188I	TCNGA	5 cut(s)	160, 386, 686, 937, 978
Hpy188III	TCNNGA	5 cut(s)	175, 394, 415, 667, 718
Hpy8I	GTNNAC	6 cut(s)	73, 292, 343, 361, 444, 592
Hpy99I	CGWCG	2 cut(s)	404, 626
HpyAV	CCTTC	5 cut(s)	280, 391, 445, 457, 748
HpyCH4III	ACNGT	1 cut(s)	877
HpyCH4IV	ACGT	2 cut(s)	246, 775
HpyCH4V	TGCA	3 cut(s)	25, 444, 894
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 531, 810
HpyF3I	CTNAG	4 cut(s)	472, 541, 683, 984
HpySE526I	ACGT	2 cut(s)	246, 775
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	7 cut(s)	307, 357, 397, 598, 664, 697, 911
HspAI	GCGC	1 cut(s)	421
Ksp22I	TGATCA	3 cut(s)	429, 663, 723
Kzo9I	GATC	9 cut(s)	114, 177, 390, 429, 567, 651, 663, 723, 937
LguI	GCTCTTC	1 cut(s)	284
Lsp1109I	GCAGC	1 cut(s)	825
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	2 cut(s)	225, 618
MaeII	ACGT	2 cut(s)	246, 775
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	9 cut(s)	116, 179, 392, 431, 569, 653, 665, 725, 939
MboI	GATC	9 cut(s)	114, 177, 390, 429, 567, 651, 663, 723, 937
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	2 cut(s)	492, 549
MmeI	TCCRAC	3 cut(s)	183, 615, 915
MseI	TTAA	2 cut(s)	843, 1009
MslI	CAYNNNNRTG	2 cut(s)	302, 698
MspCI	CTTAAG	1 cut(s)	842
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	3 cut(s)	140, 370, 452
MvaI	CCWGG	3 cut(s)	140, 370, 452
MvnI	CGCG	2 cut(s)	423, 525
MwoI	GCNNNNNNNGC	3 cut(s)	102, 531, 810
NdeII	GATC	9 cut(s)	114, 177, 390, 429, 567, 651, 663, 723, 937
NheI	GCTAGC	2 cut(s)	224, 617
NlaIII	CATG	7 cut(s)	307, 357, 397, 598, 664, 697, 911
NspI	RCATGY	2 cut(s)	357, 697
PaeI	GCATGC	1 cut(s)	357
PaeR7I	CTCGAG	2 cut(s)	944, 998
PagI	TCATGA	1 cut(s)	393
PciI	ACATGT	1 cut(s)	693
PciSI	GCTCTTC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	56, 850
PflMI	CCANNNNNTGG	2 cut(s)	261, 606
PkrI	GCNGC	1 cut(s)	840
Ppu21I	YACGTR	1 cut(s)	776
PscI	ACATGT	1 cut(s)	693
Psp6I	CCWGG	3 cut(s)	138, 368, 450
PspEI	GGTNACC	1 cut(s)	265
PspGI	CCWGG	3 cut(s)	138, 368, 450
PspPI	GGNCC	1 cut(s)	928
PspXI	VCTCGAGB	2 cut(s)	944, 998
RsaI	GTAC	3 cut(s)	575, 593, 774
RsaNI	GTAC	3 cut(s)	574, 592, 773
RseI	CAYNNNNRTG	2 cut(s)	302, 698
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	843, 1009
SatI	GCNGC	1 cut(s)	839
Sau3AI	GATC	9 cut(s)	114, 177, 390, 429, 567, 651, 663, 723, 937
Sau96I	GGNCC	1 cut(s)	928
ScrFI	CCNGG	3 cut(s)	140, 370, 452
SduI	GDGCHC	1 cut(s)	446
SfaNI	GCATC	1 cut(s)	54
Sfr274I	CTCGAG	2 cut(s)	944, 998
SlaI	CTCGAG	2 cut(s)	944, 998
SmiMI	CAYNNNNRTG	2 cut(s)	302, 698
SmlI	CTYRAG	3 cut(s)	842, 944, 998
SmoI	CTYRAG	3 cut(s)	842, 944, 998
SphI	GCATGC	1 cut(s)	357
Sse9I	AATT	2 cut(s)	492, 549
SsiI	CCGC	5 cut(s)	222, 333, 366, 525, 537
SspMI	CTAG	2 cut(s)	225, 618
StyD4I	CCNGG	3 cut(s)	138, 368, 450
StyI	CCWWGG	3 cut(s)	31, 198, 407
TaaI	ACNGT	1 cut(s)	877
TaiI	ACGT	2 cut(s)	249, 778
TaqI	TCGA	3 cut(s)	918, 945, 999
TasI	AATT	2 cut(s)	492, 549
TatI	WGTACW	1 cut(s)	591
TfiI	GAWTC	2 cut(s)	56, 850
Tru1I	TTAA	2 cut(s)	843, 1009
Tru9I	TTAA	2 cut(s)	843, 1009
TseI	GCWGC	1 cut(s)	838
TspDTI	ATGAA	3 cut(s)	121, 744, 924
Van91I	CCANNNNNTGG	2 cut(s)	261, 606
Vha464I	CTTAAG	1 cut(s)	842
VneI	GTGCAC	1 cut(s)	442
XceI	RCATGY	2 cut(s)	357, 697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XhoI	CTCGAG	2 cut(s)	944, 998
XmiI	GTMKAC	3 cut(s)	72, 342, 360
XspI	CTAG	2 cut(s)	225, 618
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.