Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008666.1

Orthogroup ID

OG0002982

Physical Location & Seq

Genomic Coordinates Reverse (-)

14120 .. 16687

Gene Structure 2568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008666.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2418 bp

atggtcaatagtggtggtactggcagcaaccaaggcatgtcgttagagaagactaaaccagtagctgtttgttctataaagaaaaagctagctgaagctgctgtagtgagtataagtaaccgtttgagtgaagcacctccggagatatctagaaagcggagtgaacctgagcccgtagaggctacggtggttcagcctaaggaggaagtggaaacgggagccgttgaagaaggtagagattgggatgatcccattgcatgccagcttgaagaactattgttgtcttatttgcaagcaattttccagagtgcaatcaagcggattactgaatgtgggtacagtgaggaggttgctgtgaaggctgtttctagaggcggcctttatgtaggcggtaaagactctgtattgaacattgtaaatgatactctggaatttctcaagggagggaaggatactgatgcttcaagagaaaatgagtttgataatttacagcacgtggtggagtacacaatgctagaaatgatcagtgtgcttagggaggtcaggccatccttatcagttgcagaagcaatgtggtggttactgatatgtgacctaaacattttgctagcctgtacaatggaaggagatctatcaagtgttcttgcttttgaagaagcctcaagtgaaagctcctctgattcttccccttcccagttaaaatcagaggcaaatactgaaatgaaccatccaaatcctagcaatgcaaattcctcaaagccgtcacttcccaactctcaaaaccatcgttctctctctgaaactctcaaatttggaagtttcccaaactctgctaaccctgaaatgccagaaggcaagcaagagagtttgtcatctatgctagatagtttggagaaatgtttgggccagacaaaggattatgtcctctcttcatctcagacatctacctctgaagaaaaatcaggagctgttcgaaaggggcggaccaaggcagaattagcagctcttcggaagaggtccttccagatggagagaaattacagggcttataggtcaaaaggaggcttcaaatcagggaagctcgctgcatttggtagttttgttatggaaaagaggccaaagcctccatctgatcttcctggagttcacacaaaagattcctcatcaaaggtaactggttcatctgcaagaggttgcttgtcaacagtaccttcaaaaggtaccacatcttcattgccttctgtggataccaagcagaaacagaagtctgattcagaagaaaaatctgacactaagactccagtcagcacctctgttccacccaagactattgattactgtgctggcatcccatatgataagtctctagggaagtatgtcccacaagataagaaggatgagctgattttgaagctagttccccggctgcagaagctgcaggatgagctacaaagttggacagagtgggccaatgagaaggttatgcaggtttctcgtagacttggtaaagaacgacctgaacttaaagcactgaggcaagagaaggaagaagccgggaaatttgaaaaggagaaacaagtggtggaagagaataccatgaagaggctgtttgagatggagcatgcattgaataatgcatccagccaggttgagagtgctaactcaactatttctaggcttcaggtgaacaattccactctcaagaagcagttgagttctgcgaaaataatggctatggaatcagctgctaatctccaggaagcattagagagggagaataaagcactgaaaaaggtccaggcatgggaggggcagaagggatcattgcaggaggagcttgaaacaaaaaagaacaaggtggctgcacttcaacaggatttaggcaaggcaaaaaatgctcttcatcaaattgagtttgtctcaccttgcataacgagaaatgaaagagaacaacgtgaagctttaacacaagtggaggaggccaagatcaaacacaaggctgaagatgacatgcagaagtatgtggaagagatcaaattacttgagagcaagttatctgaacttcaaacaaattctgactcctcaagaatagcagcgctaagaagggatgccgctggaagctttggggcttgcctgtcagacagaaaaaatgtgaagcctactaagggaagccaaagttctaccagcttcaagaagttaacaaatttccgggaccatttggggactgaaagtttgagacaggaccgcgagtgcgtgatgtgcctatctgaggagatgtcagtggttttcctcccgtgcgcgcatcaggttgtttgtgcaaaatgcaatgagctgcatctgaaacaaggaatgaaggactgcccttcatgtagggctttaattcagcgaaggatcaaagtgcaatatgctcgtccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

805

Amino Acids

89.19

Weight (kDa)

8.12

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03365 AT1G03365 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000
fragaria_vesca	FvH4_2g24221 FvH4_2g24221 FvH4_2g24221
malus_domestica	MD03G1272000.v1.1 MD11G1292600.v1.1
prunus_persica	Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1
pyrus_communis	pycom03g21660 pycom11g25900
rosa_chinensis	RchiOBHm_Chr6g0292011
rosa_laevigata	RLG00000012070
rosa_multiflora	Rmu_co8265653.1_g000001 Rmu_co8382791.1_g000001 Rmu_sc0008666.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175490 Rroxscaffold_7G00178030
rosa_rugosa	Rorug06G0222500 Rorug06G0222600 Rorug06G0222700 Rorug06G0222800 Rorug06G0222900
rosa_samantha	Rh6AG336400 Rh6BG343700 Rh6CG350000 Rh6DG336700
rosa_wichuraiana	Rw6G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1477
Acc65I	GGTACC	1 cut(s)	1220
AccB1I	GGYRCC	1 cut(s)	1220
AccI	GTMKAC	1 cut(s)	1498
AccII	CGCG	2 cut(s)	2247, 2300
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	7 cut(s)	157, 319, 375, 390, 982, 2112, 2245
AclWI	GGATC	3 cut(s)	242, 1828, 2399
AcsI	RAATTY	6 cut(s)	431, 748, 809, 1559, 2071, 2203
AcuI	CTGAAG	4 cut(s)	114, 972, 1664, 2022
AcvI	CACGTG	1 cut(s)	496
AdeI	CACNNNGTG	1 cut(s)	499
AfaI	GTAC	6 cut(s)	19, 338, 506, 616, 1209, 1222
AfeI	AGCGCT	1 cut(s)	2097
AfiI	CCNNNNNNNGG	6 cut(s)	913, 1217, 1602, 1804, 2165, 2269
AjnI	CCWGG	4 cut(s)	1138, 1644, 1755, 1797
Alw26I	GTCTC	3 cut(s)	1368, 1924, 2230
AlwI	GGATC	3 cut(s)	242, 1828, 2399
AlwNI	CAGNNNCTG	3 cut(s)	65, 968, 1435
Aor13HI	TCCGGA	1 cut(s)	139
Aor51HI	AGCGCT	1 cut(s)	2097
AoxI	GGCC	6 cut(s)	376, 545, 904, 1115, 1467, 1980
ApoI	RAATTY	6 cut(s)	431, 748, 809, 1559, 2071, 2203
ArsI	GACNNNNNNTTYG	2 cut(s)	2215, 2247
Asp718I	GGTACC	1 cut(s)	1220
AspLEI	GCGC	3 cut(s)	2098, 2300, 2302
AspS9I	GGNCC	7 cut(s)	904, 984, 1017, 1467, 1795, 2212, 2242
AsuC2I	CCSGG	3 cut(s)	1423, 1555, 2210
AsuHPI	GGTGA	2 cut(s)	1696, 1914
AsuII	TTCGAA	1 cut(s)	973
AsuNHI	GCTAGC	2 cut(s)	88, 607
AvaII	GGWCC	5 cut(s)	984, 1017, 1795, 2212, 2242
AxyI	CCTNAGG	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	1220
BanII	GRGCYC	1 cut(s)	174
BarI	GAAGNNNNNNTAC	2 cut(s)	1213, 1245
BbrPI	CACGTG	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	56
BccI	CCATC	6 cut(s)	556, 735, 792, 1021, 1135, 1609
BceAI	ACGGC	2 cut(s)	206, 745
BcgI	CGANNNNNNTGC	3 cut(s)	1475, 1509, 2390
BciT130I	CCWGG	4 cut(s)	1140, 1646, 1757, 1799
BciVI	GTATCC	2 cut(s)	445, 1240
BclI	TGATCA	1 cut(s)	522
BcnI	CCSGG	3 cut(s)	1423, 1555, 2210
BcoDI	GTCTC	3 cut(s)	1368, 1924, 2230
BfmI	CTRYAG	3 cut(s)	102, 1427, 1436
BfoI	RGCGCY	1 cut(s)	2099
BfuAI	ACCTGC	1 cut(s)	1477
BfuI	GTATCC	2 cut(s)	445, 1240
BglII	AGATCT	1 cut(s)	628
Bme1390I	CCNGG	7 cut(s)	1140, 1423, 1555, 1646, 1757, 1799, 2210
Bme18I	GGWCC	5 cut(s)	984, 1017, 1795, 2212, 2242
BmgT120I	GGNCC	7 cut(s)	904, 984, 1017, 1467, 1795, 2212, 2242
BmiI	GGNNCC	3 cut(s)	220, 1222, 2213
BmrFI	CCNGG	7 cut(s)	1140, 1423, 1555, 1646, 1757, 1799, 2210
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	6 cut(s)	448, 1356, 1646, 2098, 2311, 2344
BmtI	GCTAGC	2 cut(s)	92, 611
BmuI	ACTGGG	1 cut(s)	688
BoxI	GACNNNNGTC	1 cut(s)	1301
BpiI	GAAGAC	1 cut(s)	56
BplI	GAGNNNNNCTC	2 cut(s)	1904, 1936
BpmI	CTGGAG	3 cut(s)	1161, 1284, 1739
Bpu10I	CCTNAGC	2 cut(s)	168, 533
Bpu14I	TTCGAA	1 cut(s)	973
BpuEI	CTTGAG	5 cut(s)	422, 646, 1685, 2063, 2068
BpuMI	CCSGG	3 cut(s)	1423, 1555, 2210
BsaAI	YACGTR	1 cut(s)	496
BsaJI	CCNNGG	3 cut(s)	31, 987, 1421
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	1282, 1312
Bsc4I	CCNNNNNNNGG	6 cut(s)	913, 1217, 1602, 1804, 2165, 2269
Bse1I	ACTGG	5 cut(s)	25, 59, 694, 1180, 1301
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	6 cut(s)	252, 576, 748, 1232, 1823, 2332
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	4 cut(s)	1140, 1646, 1757, 1799
BseDI	CCNNGG	3 cut(s)	31, 987, 1421
BseGI	GGATG	8 cut(s)	250, 548, 727, 1347, 1402, 1447, 1637, 2113
BseLI	CCNNNNNNNGG	6 cut(s)	913, 1217, 1602, 1804, 2165, 2269
BseMI	GCAATG	6 cut(s)	252, 576, 748, 1232, 1823, 2332
BseMII	CTCAG	4 cut(s)	159, 950, 1523, 2259
BseNI	ACTGG	5 cut(s)	25, 59, 694, 1180, 1301
BsePI	GCGCGC	1 cut(s)	2298
BseRI	GAGGAG	6 cut(s)	359, 664, 1847, 1991, 2071, 2285
BsgI	GTGCAG	1 cut(s)	1848
Bsh1236I	CGCG	2 cut(s)	2247, 2300
BshFI	GGCC	6 cut(s)	378, 547, 906, 1117, 1469, 1982
BshNI	GGYRCC	1 cut(s)	1220
BsiSI	CCGG	4 cut(s)	140, 1423, 1554, 2209
BslFI	GGGAC	3 cut(s)	1364, 2225, 2236
BslI	CCNNNNNNNGG	6 cut(s)	913, 1217, 1602, 1804, 2165, 2269
BsmAI	GTCTC	3 cut(s)	1368, 1924, 2230
BsmFI	GGGAC	3 cut(s)	1364, 2225, 2236
BsnI	GGCC	6 cut(s)	378, 547, 906, 1117, 1469, 1982
Bsp119I	TTCGAA	1 cut(s)	973
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp13I	TCCGGA	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	614
Bsp143I	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 1986, 2031, 2391
BspACI	CCGC	7 cut(s)	157, 319, 375, 390, 982, 2112, 2245
BspANI	GGCC	6 cut(s)	378, 547, 906, 1117, 1469, 1982
BspCNI	CTCAG	4 cut(s)	160, 949, 1524, 2260
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	2 cut(s)	2247, 2300
BspLI	GGNNCC	3 cut(s)	220, 1222, 2213
BspMAI	CTGCAG	2 cut(s)	1431, 1440
BspMI	ACCTGC	1 cut(s)	1477
BspOI	GCTAGC	2 cut(s)	92, 611
BspPI	GGATC	3 cut(s)	242, 1828, 2399
BspQI	GCTCTTC	2 cut(s)	1011, 1905
BspT104I	TTCGAA	1 cut(s)	973
BspT107I	GGYRCC	1 cut(s)	1220
BsrDI	GCAATG	6 cut(s)	252, 576, 748, 1232, 1823, 2332
BsrGI	TGTACA	1 cut(s)	614
BsrI	ACTGG	5 cut(s)	25, 59, 694, 1180, 1301
BssECI	CCNNGG	3 cut(s)	31, 987, 1421
BssHII	GCGCGC	1 cut(s)	2298
BssMI	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 1986, 2031, 2391
BssT1I	CCWWGG	2 cut(s)	31, 987
Bst2UI	CCWGG	4 cut(s)	1140, 1646, 1757, 1799
Bst4CI	ACNGT	5 cut(s)	122, 187, 341, 1207, 1340
Bst6I	CTCTTC	7 cut(s)	934, 1007, 1011, 1581, 1595, 1905, 2022
BstAPI	GCANNNNNTGC	2 cut(s)	1435, 1895
BstAUI	TGTACA	1 cut(s)	614
BstBAI	YACGTR	1 cut(s)	496
BstBI	TTCGAA	1 cut(s)	973
BstDEI	CTNAG	9 cut(s)	168, 198, 533, 936, 1293, 1532, 2099, 2163, 2268
BstENI	CCTNNNNNAGG	2 cut(s)	1215, 2267
BstF5I	GGATG	8 cut(s)	250, 548, 727, 1347, 1402, 1447, 1637, 2113
BstFNI	CGCG	2 cut(s)	2247, 2300
BstH2I	RGCGCY	1 cut(s)	2099
BstHHI	GCGC	3 cut(s)	2098, 2300, 2302
BstKTI	GATC	8 cut(s)	250, 525, 631, 1135, 1823, 1989, 2034, 2394
BstMAI	GTCTC	3 cut(s)	1368, 1924, 2230
BstMBI	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 1986, 2031, 2391
BstNI	CCWGG	4 cut(s)	1140, 1646, 1757, 1799
BstNSI	RCATGY	4 cut(s)	40, 261, 1625, 2014
BstPAI	GACNNNNGTC	1 cut(s)	1301
BstSCI	CCNGG	7 cut(s)	1138, 1421, 1553, 1644, 1755, 1797, 2208
BstSFI	CTRYAG	3 cut(s)	102, 1427, 1436
BstUI	CGCG	2 cut(s)	2247, 2300
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
Bsu36I	CCTNAGG	1 cut(s)	198
BsuI	GTATCC	2 cut(s)	445, 1240
BsuRI	GGCC	6 cut(s)	378, 547, 906, 1117, 1469, 1982
BtsCI	GGATG	8 cut(s)	250, 548, 727, 1347, 1402, 1447, 1637, 2113
BtsIMutI	CAGTG	5 cut(s)	346, 532, 1529, 1784, 2286
BveI	ACCTGC	1 cut(s)	1477
CaiI	CAGNNNCTG	3 cut(s)	65, 968, 1435
CfoI	GCGC	3 cut(s)	2098, 2300, 2302
Cfr13I	GGNCC	7 cut(s)	904, 984, 1017, 1467, 1795, 2212, 2242
Csp6I	GTAC	6 cut(s)	18, 337, 505, 615, 1208, 1221
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	7 cut(s)	37, 258, 1597, 1622, 1803, 2011, 2367
CviQI	GTAC	6 cut(s)	18, 337, 505, 615, 1208, 1221
DdeI	CTNAG	9 cut(s)	168, 198, 533, 936, 1293, 1532, 2099, 2163, 2268
DpnI	GATC	8 cut(s)	249, 524, 630, 1134, 1822, 1988, 2033, 2393
DpnII	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 1986, 2031, 2391
DraIII	CACNNNGTG	1 cut(s)	499
Eam1104I	CTCTTC	7 cut(s)	934, 1007, 1011, 1581, 1595, 1905, 2022
EarI	CTCTTC	7 cut(s)	934, 1007, 1011, 1581, 1595, 1905, 2022
EciI	GGCGGA	1 cut(s)	997
Eco130I	CCWWGG	2 cut(s)	31, 987
Eco24I	GRGCYC	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	147
Eco47I	GGWCC	5 cut(s)	984, 1017, 1795, 2212, 2242
Eco47III	AGCGCT	1 cut(s)	2097
Eco57I	CTGAAG	4 cut(s)	114, 972, 1664, 2022
Eco72I	CACGTG	1 cut(s)	496
Eco81I	CCTNAGG	1 cut(s)	198
EcoNI	CCTNNNNNAGG	2 cut(s)	1215, 2267
EcoO109I	RGGNCCY	1 cut(s)	1017
EcoRII	CCWGG	4 cut(s)	1138, 1644, 1755, 1797
EcoRV	GATATC	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	31, 987
EcoT22I	ATGCAT	2 cut(s)	1627, 1639
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	2 cut(s)	31, 987
FaeI	CATG	7 cut(s)	40, 261, 1600, 1625, 1806, 2014, 2370
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FaqI	GGGAC	3 cut(s)	1364, 2225, 2236
FatI	CATG	7 cut(s)	36, 257, 1596, 1621, 1802, 2010, 2366
FauNDI	CATATG	1 cut(s)	1354
FbaI	TGATCA	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	1498
FokI	GGATG	8 cut(s)	257, 535, 714, 1334, 1409, 1454, 1624, 2120
FriOI	GRGCYC	1 cut(s)	174
GlaI	GCGC	3 cut(s)	2097, 2299, 2301
GsuI	CTGGAG	3 cut(s)	1161, 1284, 1739
HaeII	RGCGCY	1 cut(s)	2099
HaeIII	GGCC	6 cut(s)	378, 547, 906, 1117, 1469, 1982
HapII	CCGG	4 cut(s)	140, 1423, 1554, 2209
HhaI	GCGC	3 cut(s)	2098, 2300, 2302
Hin1II	CATG	7 cut(s)	40, 261, 1600, 1625, 1806, 2014, 2370
Hin6I	GCGC	3 cut(s)	2096, 2298, 2300
HinP1I	GCGC	3 cut(s)	2096, 2298, 2300
HincII	GTYRAC	2 cut(s)	1203, 2199
HindII	GTYRAC	2 cut(s)	1203, 2199
HindIII	AAGCTT	2 cut(s)	1959, 2119
HinfI	GANTC	7 cut(s)	398, 680, 1157, 1271, 1297, 1739, 2078
HpaI	GTTAAC	1 cut(s)	2199
HpaII	CCGG	4 cut(s)	140, 1423, 1554, 2209
HphI	GGTGA	2 cut(s)	1696, 1914
Hpy166II	GTNNAC	7 cut(s)	164, 507, 1147, 1203, 1499, 1687, 2199
Hpy8I	GTNNAC	7 cut(s)	164, 507, 1147, 1203, 1499, 1687, 2199
HpyCH4III	ACNGT	5 cut(s)	122, 187, 341, 1207, 1340
HpyCH4IV	ACGT	2 cut(s)	495, 1954
HpyF3I	CTNAG	9 cut(s)	168, 198, 533, 936, 1293, 1532, 2099, 2163, 2268
HpySE526I	ACGT	2 cut(s)	495, 1954
Hsp92II	CATG	7 cut(s)	40, 261, 1600, 1625, 1806, 2014, 2370
HspAI	GCGC	3 cut(s)	2096, 2298, 2300
Kpn2I	TCCGGA	1 cut(s)	139
KpnI	GGTACC	1 cut(s)	1224
Ksp22I	TGATCA	1 cut(s)	522
KspAI	GTTAAC	1 cut(s)	2199
Kzo9I	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 1986, 2031, 2391
LguI	GCTCTTC	2 cut(s)	1011, 1905
LmnI	GCTCC	5 cut(s)	218, 677, 965, 1618, 1834
LweI	GCATC	6 cut(s)	448, 1356, 1646, 2098, 2311, 2344
MaeII	ACGT	2 cut(s)	495, 1954
MaeIII	GTNAC	5 cut(s)	116, 579, 590, 762, 1171
MalI	GATC	8 cut(s)	249, 524, 630, 1134, 1822, 1988, 2033, 2393
MboI	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 1986, 2031, 2391
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	1 cut(s)	174
MlyI	GAGTC	3 cut(s)	392, 1291, 2072
MmeI	TCCRAC	1 cut(s)	1436
Mph1103I	ATGCAT	2 cut(s)	1627, 1639
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	5 cut(s)	698, 1524, 1964, 2198, 2378
MspA1I	CMGCKG	2 cut(s)	1745, 2114
MspI	CCGG	4 cut(s)	140, 1423, 1554, 2209
MspR9I	CCNGG	7 cut(s)	1140, 1423, 1555, 1646, 1757, 1799, 2210
MvaI	CCWGG	4 cut(s)	1140, 1646, 1757, 1799
MvnI	CGCG	2 cut(s)	2247, 2300
NciI	CCSGG	3 cut(s)	1423, 1555, 2210
NdeI	CATATG	1 cut(s)	1354
NdeII	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 1986, 2031, 2391
NheI	GCTAGC	2 cut(s)	88, 607
NlaIII	CATG	7 cut(s)	40, 261, 1600, 1625, 1806, 2014, 2370
NlaIV	GGNNCC	3 cut(s)	220, 1222, 2213
NmuCI	GTSAC	2 cut(s)	590, 762
NsiI	ATGCAT	2 cut(s)	1627, 1639
NspI	RCATGY	4 cut(s)	40, 261, 1625, 2014
NspV	TTCGAA	1 cut(s)	973
PaeI	GCATGC	2 cut(s)	261, 1625
PauI	GCGCGC	1 cut(s)	2298
PciSI	GCTCTTC	2 cut(s)	1011, 1905
PfeI	GAWTC	4 cut(s)	680, 1157, 1271, 1739
PfoI	TCCNGGA	3 cut(s)	1138, 1755, 2208
PleI	GAGTC	3 cut(s)	392, 1291, 2072
PmaCI	CACGTG	1 cut(s)	496
PmlI	CACGTG	1 cut(s)	496
PpsI	GAGTC	3 cut(s)	392, 1291, 2072
Ppu21I	YACGTR	1 cut(s)	496
PpuMI	RGGWCCY	1 cut(s)	1017
PshAI	GACNNNNGTC	1 cut(s)	1301
Psp5II	RGGWCCY	1 cut(s)	1017
Psp6I	CCWGG	4 cut(s)	1138, 1644, 1755, 1797
PspCI	CACGTG	1 cut(s)	496
PspGI	CCWGG	4 cut(s)	1138, 1644, 1755, 1797
PspN4I	GGNNCC	3 cut(s)	220, 1222, 2213
PspPI	GGNCC	7 cut(s)	904, 984, 1017, 1467, 1795, 2212, 2242
PspPPI	RGGWCCY	1 cut(s)	1017
PstI	CTGCAG	2 cut(s)	1431, 1440
PstNI	CAGNNNCTG	3 cut(s)	65, 968, 1435
PsuI	RGATCY	1 cut(s)	628
PteI	GCGCGC	1 cut(s)	2298
PvuII	CAGCTG	1 cut(s)	1745
RsaI	GTAC	6 cut(s)	19, 338, 506, 616, 1209, 1222
RsaNI	GTAC	6 cut(s)	18, 337, 505, 615, 1208, 1221
SapI	GCTCTTC	2 cut(s)	1011, 1905
SaqAI	TTAA	5 cut(s)	698, 1524, 1964, 2198, 2378
Sau3AI	GATC	8 cut(s)	247, 522, 628, 1132, 1820, 1986, 2031, 2391
Sau96I	GGNCC	7 cut(s)	904, 984, 1017, 1467, 1795, 2212, 2242
SchI	GAGTC	3 cut(s)	392, 1291, 2072
ScrFI	CCNGG	7 cut(s)	1140, 1423, 1555, 1646, 1757, 1799, 2210
SduI	GDGCHC	1 cut(s)	174
SfaNI	GCATC	6 cut(s)	448, 1356, 1646, 2098, 2311, 2344
SfcI	CTRYAG	3 cut(s)	102, 1427, 1436
SfuI	TTCGAA	1 cut(s)	973
SinI	GGWCC	5 cut(s)	984, 1017, 1795, 2212, 2242
SmlI	CTYRAG	5 cut(s)	437, 661, 1700, 2042, 2083
SmoI	CTYRAG	5 cut(s)	437, 661, 1700, 2042, 2083
SphI	GCATGC	2 cut(s)	261, 1625
SsiI	CCGC	7 cut(s)	157, 319, 375, 390, 982, 2112, 2245
StyD4I	CCNGG	7 cut(s)	1138, 1421, 1553, 1644, 1755, 1797, 2208
StyI	CCWWGG	2 cut(s)	31, 987
TaaI	ACNGT	5 cut(s)	122, 187, 341, 1207, 1340
TaiI	ACGT	2 cut(s)	498, 1957
TaqI	TCGA	1 cut(s)	973
TatI	WGTACW	2 cut(s)	504, 614
TauI	GCSGC	2 cut(s)	378, 2114
TfiI	GAWTC	4 cut(s)	680, 1157, 1271, 1739
Tru1I	TTAA	5 cut(s)	698, 1524, 1964, 2198, 2378
Tru9I	TTAA	5 cut(s)	698, 1524, 1964, 2198, 2378
TscAI	CASTG	5 cut(s)	346, 532, 1536, 1791, 2286
TseFI	GTSAC	2 cut(s)	590, 762
Tsp45I	GTSAC	2 cut(s)	590, 762
TspDTI	ATGAA	9 cut(s)	737, 921, 1170, 1221, 1613, 1892, 1956, 2355, 2366
TspRI	CASTG	5 cut(s)	346, 532, 1536, 1791, 2286
VpaK11BI	GGWCC	5 cut(s)	984, 1017, 1795, 2212, 2242
XagI	CCTNNNNNAGG	2 cut(s)	1215, 2267
XapI	RAATTY	6 cut(s)	431, 748, 809, 1559, 2071, 2203
XbaI	TCTAGA	2 cut(s)	149, 368
XceI	RCATGY	4 cut(s)	40, 261, 1625, 2014
XmiI	GTMKAC	1 cut(s)	1498
Zsp2I	ATGCAT	2 cut(s)	1627, 1639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.