Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002982

Physical Location & Seq

Genomic Coordinates Forward (+)

35613650 .. 35614768

Gene Structure 1119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0222800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCTTCTAGTGACCTCCATTTGGATATTTATTATATCGAGAAAGAAGAATGTGAAAGCTGCAACAGAGACTACCTTTTTGCCACAACATCAGTGGAGAAGAGTTTCCTATCAAGAGCTTCTAAGTGCAACAAGTGGATTCAATATGAGCAACTTACTTGGCACTGGGAGTTTTGGCTCAGTATATAAAGGAACACTGTCAGATGGGATAGATGTTGCTATTAAGGTATATAATTTAGAAACAGAAGGGGCATTCTCAAGTTTTGATGTCGAATGCGAAATGCTAAGCAATATTCGCCATCGAAACCTTATCAAAGTCATTAGTTGCTGCAGTCAAGTTGATTTCAAAGCCGTTGTACTAAACTACATGCCTAATGGGAGCCTTGAAAAGTGGTTGTATTCTCATAGCTTAACCTTGAACATCTTGCAGAGGTTGAATATATTGATAGATGTTGCAACGACATTGGAGTATCTCCATCATGGTTATGATAGACCTATTGTGCATTGTGATCTGAAGCCAAGCAACATATTACTAGATGATGATATGGTTGCACATGTTGCTGATTTTGGTATCGCAAAACTCTTGGGTGGAGAGGATTCTATCACTCGAACCTTGACCCTTGCCACAATCGGGTACATGGCTCCAGTGACCAGAAGAGGGGATATGTATAGTTTTGGTGTTGTAGTGATGGAGACATTCACAAAAAGTAAGCCAACAGATGCGATGTTTGTGGGGGAAATGAATTTAAAGCACTGGGTTGCAAATTCACTTCTTGCAGATGCAATAGTTGAAGTTGTTGATACCACTTTACTTGGGACAGAGGAATATCATGACTTTGTGAGCAAGAGAGATTGTTTATCATCTATTATGAGATTGGCTATTGCTTGTTGTGGAGAATCACCAGAAGAGAGGATAAATATGCACGAGGCTCTAGCCACGCTGAACAAAATCAAGATCAAATTTTTGAAGAACGCTTCAGAAGGTGTGGTATTGAGCCGTCATGGACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

336

Amino Acids

37.48

Weight (kDa)

6.13

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 312	2.1e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	49 - 311	3.3e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03365 AT1G03365 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000
fragaria_vesca	FvH4_2g24221 FvH4_2g24221 FvH4_2g24221
malus_domestica	MD03G1272000.v1.1 MD11G1292600.v1.1
prunus_persica	Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1
pyrus_communis	pycom03g21660 pycom11g25900
rosa_chinensis	RchiOBHm_Chr6g0292011
rosa_laevigata	RLG00000012070
rosa_multiflora	Rmu_co8265653.1_g000001 Rmu_co8382791.1_g000001 Rmu_sc0008666.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175490 Rroxscaffold_7G00178030
rosa_rugosa	Rorug06G0222500 Rorug06G0222600 Rorug06G0222700 Rorug06G0222800 Rorug06G0222900
rosa_samantha	Rh6AG336400 Rh6BG343700 Rh6CG350000 Rh6DG336700
rosa_wichuraiana	Rw6G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	742, 763, 959
AcuI	CTGAAG	2 cut(s)	533, 960
AfaI	GTAC	2 cut(s)	357, 635
AfiI	CCNNNNNNNGG	3 cut(s)	21, 630, 657
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	7 cut(s)	142, 346, 386, 418, 436, 791, 967
AluBI	AGCT	3 cut(s)	59, 118, 408
AluI	AGCT	3 cut(s)	59, 118, 408
Alw26I	GTCTC	2 cut(s)	62, 686
ApeKI	GCWGC	2 cut(s)	59, 327
ApoI	RAATTY	3 cut(s)	742, 763, 959
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
Asp700I	GAANNNNTTC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	891
BauI	CACGAG	1 cut(s)	923
BbvI	GCAGC	2 cut(s)	46, 314
BccI	CCATC	4 cut(s)	197, 306, 483, 682
BceAI	ACGGC	2 cut(s)	335, 981
BcoDI	GTCTC	2 cut(s)	62, 686
BfaI	CTAG	3 cut(s)	8, 533, 932
BfmI	CTRYAG	1 cut(s)	328
BisI	GCNGC	2 cut(s)	60, 328
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	2 cut(s)	61, 329
BmiI	GGNNCC	2 cut(s)	380, 642
BmrI	ACTGGG	2 cut(s)	174, 763
BmsI	GCATC	2 cut(s)	709, 769
BmuI	ACTGGG	2 cut(s)	174, 763
BpmI	CTGGAG	1 cut(s)	627
Bpu1102I	GCTNAGC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 630, 657
Bse1I	ACTGG	3 cut(s)	169, 644, 758
BseLI	CCNNNNNNNGG	3 cut(s)	21, 630, 657
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	3 cut(s)	169, 644, 758
BseXI	GCAGC	2 cut(s)	46, 314
BslFI	GGGAC	1 cut(s)	829
BslI	CCNNNNNNNGG	3 cut(s)	21, 630, 657
BsmAI	GTCTC	2 cut(s)	62, 686
BsmFI	GGGAC	1 cut(s)	829
BsmI	GAATGC	2 cut(s)	251, 278
Bsp143I	GATC	2 cut(s)	508, 954
Bsp1720I	GCTNAGC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	829
BspLI	GGNNCC	2 cut(s)	380, 642
BspMAI	CTGCAG	1 cut(s)	332
BsrI	ACTGG	3 cut(s)	169, 644, 758
BssMI	GATC	2 cut(s)	508, 954
BssSI	CACGAG	1 cut(s)	923
Bst2BI	CACGAG	1 cut(s)	923
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	3 cut(s)	94, 649, 900
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstDEI	CTNAG	3 cut(s)	122, 178, 284
BstKTI	GATC	2 cut(s)	511, 957
BstMAI	GTCTC	2 cut(s)	62, 686
BstMBI	GATC	2 cut(s)	508, 954
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 557
BstNSI	RCATGY	2 cut(s)	370, 557
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	2 cut(s)	46, 314
BtgZI	GCGATG	1 cut(s)	737
BtsIMutI	CAGTG	5 cut(s)	98, 162, 194, 651, 751
CciI	TCATGA	1 cut(s)	829
Csp6I	GTAC	2 cut(s)	356, 634
CspCI	CAANNNNNGTGG	4 cut(s)	74, 109, 793, 828
CviAII	CATG	6 cut(s)	367, 479, 554, 637, 830, 1001
CviQI	GTAC	2 cut(s)	356, 634
DdeI	CTNAG	3 cut(s)	122, 178, 284
DpnI	GATC	2 cut(s)	510, 956
DpnII	GATC	2 cut(s)	508, 954
DraI	TTTAAA	1 cut(s)	747
Eam1104I	CTCTTC	3 cut(s)	94, 649, 900
EarI	CTCTTC	3 cut(s)	94, 649, 900
Eco57I	CTGAAG	2 cut(s)	533, 960
FaeI	CATG	6 cut(s)	370, 482, 557, 640, 833, 1004
FaqI	GGGAC	1 cut(s)	829
FatI	CATG	6 cut(s)	366, 478, 553, 636, 829, 1000
Fnu4HI	GCNGC	2 cut(s)	60, 328
Fsp4HI	GCNGC	2 cut(s)	60, 328
FspBI	CTAG	3 cut(s)	8, 533, 932
GluI	GCNGC	2 cut(s)	60, 328
GsuI	CTGGAG	1 cut(s)	627
Hin1II	CATG	6 cut(s)	370, 482, 557, 640, 833, 1004
HinfI	GANTC	4 cut(s)	138, 596, 896, 1005
HphI	GGTGA	1 cut(s)	891
Hpy188I	TCNGA	4 cut(s)	202, 513, 979, 1010
Hpy188III	TCNNGA	4 cut(s)	39, 113, 830, 952
HpyAV	CCTTC	2 cut(s)	239, 974
HpyCH4III	ACNGT	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 557
HpyF3I	CTNAG	3 cut(s)	122, 178, 284
Hsp92II	CATG	6 cut(s)	370, 482, 557, 640, 833, 1004
Kzo9I	GATC	2 cut(s)	508, 954
LmnI	GCTCC	2 cut(s)	378, 646
LpnPI	CCDG	5 cut(s)	150, 657, 664, 739, 915
Lsp1109I	GCAGC	2 cut(s)	46, 314
LweI	GCATC	2 cut(s)	709, 769
MaeI	CTAG	3 cut(s)	8, 533, 932
MaeIII	GTNAC	2 cut(s)	10, 646
MalI	GATC	2 cut(s)	510, 956
MboI	GATC	2 cut(s)	508, 954
MboII	GAAGA	5 cut(s)	58, 111, 666, 917, 979
MluCI	AATT	4 cut(s)	232, 742, 763, 959
MlyI	GAGTC	1 cut(s)	999
MnlI	CCTC	7 cut(s)	25, 423, 586, 650, 814, 903, 919
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	3 cut(s)	222, 410, 746
MslI	CAYNNNNRTG	1 cut(s)	483
Mva1269I	GAATGC	2 cut(s)	251, 278
MwoI	GCNNNNNNNGC	2 cut(s)	294, 557
NdeII	GATC	2 cut(s)	508, 954
NlaIII	CATG	6 cut(s)	370, 482, 557, 640, 833, 1004
NlaIV	GGNNCC	2 cut(s)	380, 642
NmuCI	GTSAC	2 cut(s)	10, 646
NspI	RCATGY	2 cut(s)	370, 557
PagI	TCATGA	1 cut(s)	829
PciI	ACATGT	1 cut(s)	553
PctI	GAATGC	2 cut(s)	251, 278
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	138, 596, 896
PkrI	GCNGC	2 cut(s)	61, 329
PleI	GAGTC	1 cut(s)	999
PpsI	GAGTC	1 cut(s)	999
PscI	ACATGT	1 cut(s)	553
PspN4I	GGNNCC	2 cut(s)	380, 642
PstI	CTGCAG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	357, 635
RsaNI	GTAC	2 cut(s)	356, 634
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	3 cut(s)	222, 410, 746
SatI	GCNGC	2 cut(s)	60, 328
Sau3AI	GATC	2 cut(s)	508, 954
SchI	GAGTC	1 cut(s)	999
SfaNI	GCATC	2 cut(s)	709, 769
SfcI	CTRYAG	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	4 cut(s)	232, 742, 763, 959
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	3 cut(s)	8, 533, 932
TaaI	ACNGT	1 cut(s)	198
TaqI	TCGA	4 cut(s)	38, 270, 301, 607
TasI	AATT	4 cut(s)	232, 742, 763, 959
TatI	WGTACW	1 cut(s)	355
TfiI	GAWTC	3 cut(s)	138, 596, 896
Tru1I	TTAA	3 cut(s)	222, 410, 746
Tru9I	TTAA	3 cut(s)	222, 410, 746
TscAI	CASTG	5 cut(s)	98, 169, 201, 651, 758
TseFI	GTSAC	2 cut(s)	10, 646
TseI	GCWGC	2 cut(s)	59, 327
Tsp45I	GTSAC	2 cut(s)	10, 646
TspDTI	ATGAA	1 cut(s)	755
TspRI	CASTG	5 cut(s)	98, 169, 201, 651, 758
XapI	RAATTY	3 cut(s)	742, 763, 959
XceI	RCATGY	2 cut(s)	370, 557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	3 cut(s)	8, 533, 932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.