Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002982

Physical Location & Seq

Genomic Coordinates Reverse (-)

14982682 .. 14985538

Gene Structure 2857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012070

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2469 bp

ATGGTTAATAGTGGTGGTACTGGCAGCAACCAAGGGATGTCGTTAGAGAAGAGACGAGAGAAGACTAAACCAGTAGCTGTTTGTTCTATAAAGAAAAAGCTAGCTGAAGCTGCTGTAGTGAGTATAAGTAACCATTTGAGTGAAGCACCTCCGGAGATATCTAGAAAACGGAGTGAACCTGAGCCCGTAGCGGGTACGGTGGTTCAGCCTAAGGAGGAAGTGGAAACGGGAGCCGTTGAGGAAGGTAGAGATTGGGATGATCCCATTGCATGCCAGCTTGAAGAACTATTGTTGTCTTATTTGCAAGCAATTTTCCAGAGTGCAATCAAGCGGATTACTGAATGTGGGTACAGTGAGGAGGTTGCTGTGAAGGCTGTTTCTAGAGGCGGCCTTTACGTAGGCGGTAAAGACTCTGTATTGAACATTGTAAATGATACACTGGAATTTCTCAAGGGAGGGAAGGATACCGATGCTTCAAGAGAAAATGAGTTTGATAATTTACAGCACGTGGTGGAGTACACAATGCTAGAAATGATCAGTGTGCTTAGGGAGGTCAGGCCATCCTTATCAGTTGCAGAAGCAATGTGGTGGTTACTGATATGTGACCTAAACATTTTGCTAGCCTGTACAATGGAAGGAGATCTATCAAGTGTTCTTGCTTTTGAAGAAGCCTCAAGTGAAAGCTCCTCTGATTCTTCCTCTTCCCAGTTAAAATCAGAGGCAAATACTGAAATGAACCTTCCAAATCCTAGCAATGCAAATTCCTCAAAGTCGTCACTTCCCAACTCTCAAAACCATCTTTCTCTCTCTGAAACACTCAAATTTGGAAGTTTCCCAAACTCTGCTAACCCTGAAACGCCAGAAGGCAAGGAACAGAGTTTGTCATCTATGCTAGATAGTTTGGAGAAATGTTTGGGCTCCACAAAGGATTATGTCCTATCTTCATCTCAGACATCTACCTCTGAAGAAAAATCAGGAGCTGTTCGAAAGGGGCGGACCAAGGCAGAATTAGCAGCACTTCGGAAGAGGTCCTTCCAGATGGAGAGAAATTACAGGGCTTATAGGTCAAAAGGAGGCTTCAAATCAGGGAAGCTCGCTGCATTTGGTAGTTTTGTTATGGAAAAGAGGCCAAAGCCTCCATCTGATCTTCCTGGAGTTCACACAAAAGATTCCTCATCAAAGGTAACTAGTTCATCTGCAAGACGTTGCTCGTCAACAGTACCTTCAAAAGGTACCACATCCTCATTGCCTTCTGTGGATACCAAGCAGAAACTGAAGTCAGATTCAGAAGAAAAATCTGACACTAAGACTCCAGTCAGCACCTCTGTTCCACCCAAGACTATTGATTACTGTGCTGGCATCCCATATGATAAGTCTCTAGGGAAGTATGTCCCACAAGATAAGAAGGATGAGCTGATTTTGAAGCTAGTTCCCCGGCTGCAGAAGCTGCAGGATGAGGTAGAAAGTTGGACAGAGTGGGCCAATGAGAAGGTTATGCAGGTTTCTCGTAGACTTGGTAAAGAACGACCTGAACTTAAAGCACTGAGGCAAGAAAAGGAAGAAGCGGGGAAATTTGAAAAGGAGAAACAAGTGGTGGAAGAGAATACCATGAAGAGGCTATTTGAGATGGAGCATGCATTGAATAATGCATCCAGCCAGGTTGAGAGTGCTAACTCAACTATCTCTAGGCTTCAGGTGAACAATTCCACTCTCAAGAAGCAGTTGAGTTCTGCGAAAATAATGGCTATAGAATCAGCTGCTAATCTCCAGGAAGCATTAGAGAGGGAGAATAAAGCACTGAAAAAGGTCCAGGCATGGGAGGGGCAGAAGGGATCATTGCAGGAGGAGCTTGAAACAAAAAAGAACAAGGTGGCTGCACTTCAACAGGATTTAGGCAAGGCAAAAAATGCTCTTCATCAAATTGAGGCCAGATGGAAGCGGGAGATAATGGAAAAGGAAACAATACTCGCACAGGCTGACTCTATGAGAAATGAAAGAGAACAGCGTGAAGCTTTAACACAAGTGGAGGAGGCCAAGATCAACAACAAGGCTGAAGATGACATGCAGAAGTATGTGGAAGAGATCAAATTACTTGAGAGCAAGTTATCTGAACTTCAAACAAAATCTGACTCCTCAAGAATAGCAGCACTAAGAAGGGATGCTGCTGGAAGCTTTGGGGCTTGCCTGTCAGACAGAAAAAATGTGAAGCCTACTAAAGGAAGCCAAAGTTCTACCAGCTTCAAGAAGTTAACAAATTCCCGGGACCATTTTGGGACTGAAAGTTTGAGACAGGACCGCGAGTGCGTGATGTGCCTATCTGAGGAGATGTCAGTGGTTTTCCTCCCGTGCGCGCATCAGGTTGTCTGTGCAAAATGCAATGAGCTGCATCTGAAACAAGGAATGAAGGACTGCCCTTCATGTAGGGCTTTAATTCAGCGAAGGATCAAAGTGCAATATGCTCGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

823

Amino Acids

91.16

Weight (kDa)

8.26

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIR2-like_helical	PF20235	101 - 212	2.1e-21	PIR2-like, helical domain
zf-C3HC4_3	PF13920	765 - 813	2e-11	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03365 AT1G03365 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000
fragaria_vesca	FvH4_2g24221 FvH4_2g24221 FvH4_2g24221
malus_domestica	MD03G1272000.v1.1 MD11G1292600.v1.1
prunus_persica	Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1
pyrus_communis	pycom03g21660 pycom11g25900
rosa_chinensis	RchiOBHm_Chr6g0292011
rosa_laevigata	RLG00000012070
rosa_multiflora	Rmu_co8265653.1_g000001 Rmu_co8382791.1_g000001 Rmu_sc0008666.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175490 Rroxscaffold_7G00178030
rosa_rugosa	Rorug06G0222500 Rorug06G0222600 Rorug06G0222700 Rorug06G0222800 Rorug06G0222900
rosa_samantha	Rh6AG336400 Rh6BG343700 Rh6CG350000 Rh6DG336700
rosa_wichuraiana	Rw6G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1489
Acc65I	GGTACC	1 cut(s)	1232
AccB1I	GGYRCC	1 cut(s)	1232
AccI	GTMKAC	1 cut(s)	1510
AccII	CGCG	2 cut(s)	2298, 2351
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	8 cut(s)	191, 331, 387, 402, 994, 1565, 1939, 2296
AclWI	GGATC	3 cut(s)	254, 1840, 2450
AcsI	RAATTY	5 cut(s)	443, 760, 821, 1571, 2254
AcuI	CTGAAG	5 cut(s)	126, 984, 1295, 1676, 2073
AcvI	CACGTG	1 cut(s)	508
AdeI	CACNNNGTG	1 cut(s)	511
AfaI	GTAC	7 cut(s)	19, 196, 350, 518, 628, 1221, 1234
AfiI	CCNNNNNNNGG	6 cut(s)	191, 1229, 1614, 1816, 2216, 2320
AhlI	ACTAGT	1 cut(s)	1187
AjnI	CCWGG	4 cut(s)	1150, 1656, 1767, 1809
Alw26I	GTCTC	3 cut(s)	46, 1380, 2281
AlwI	GGATC	3 cut(s)	254, 1840, 2450
AlwNI	CAGNNNCTG	4 cut(s)	77, 980, 1273, 1447
Ama87I	CYCGRG	1 cut(s)	2259
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	6 cut(s)	388, 557, 1127, 1479, 1926, 2031
ApoI	RAATTY	5 cut(s)	443, 760, 821, 1571, 2254
ArsI	GACNNNNNNTTYG	2 cut(s)	2266, 2298
Asp718I	GGTACC	1 cut(s)	1232
AspLEI	GCGC	2 cut(s)	2351, 2353
AspS9I	GGNCC	6 cut(s)	996, 1029, 1479, 1807, 2263, 2293
AsuC2I	CCSGG	3 cut(s)	1435, 2260, 2261
AsuHPI	GGTGA	1 cut(s)	1708
AsuII	TTCGAA	1 cut(s)	985
AsuNHI	GCTAGC	2 cut(s)	100, 619
AvaI	CYCGRG	1 cut(s)	2259
AvaII	GGWCC	5 cut(s)	996, 1029, 1807, 2263, 2293
AxyI	CCTNAGG	1 cut(s)	210
BaeI	ACNNNNGTAYC	2 cut(s)	186, 219
BanI	GGYRCC	1 cut(s)	1232
BanII	GRGCYC	2 cut(s)	186, 920
BbrPI	CACGTG	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	68
BccI	CCATC	6 cut(s)	568, 804, 1033, 1147, 1621, 1926
BceAI	ACGGC	1 cut(s)	218
BcgI	CGANNNNNNTGC	3 cut(s)	1487, 1521, 2441
BciT130I	CCWGG	4 cut(s)	1152, 1658, 1769, 1811
BciVI	GTATCC	2 cut(s)	457, 1252
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	3 cut(s)	1435, 2260, 2261
BcoDI	GTCTC	3 cut(s)	46, 1380, 2281
BcuI	ACTAGT	1 cut(s)	1187
BfmI	CTRYAG	4 cut(s)	114, 1439, 1448, 1746
BfuAI	ACCTGC	1 cut(s)	1489
BfuI	GTATCC	2 cut(s)	457, 1252
BglII	AGATCT	1 cut(s)	640
Bme1390I	CCNGG	7 cut(s)	1152, 1435, 1658, 1769, 1811, 2260, 2261
Bme18I	GGWCC	5 cut(s)	996, 1029, 1807, 2263, 2293
BmeT110I	CYCGRG	1 cut(s)	2259
BmgT120I	GGNCC	6 cut(s)	996, 1029, 1479, 1807, 2263, 2293
BmiI	GGNNCC	4 cut(s)	232, 919, 1234, 2264
BmrFI	CCNGG	7 cut(s)	1152, 1435, 1658, 1769, 1811, 2260, 2261
BmrI	ACTGGG	1 cut(s)	700
BmsI	GCATC	6 cut(s)	460, 1368, 1658, 2149, 2362, 2395
BmtI	GCTAGC	2 cut(s)	104, 623
BmuI	ACTGGG	1 cut(s)	700
BoxI	GACNNNNGTC	1 cut(s)	1313
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	3 cut(s)	1173, 1296, 1751
Bpu10I	CCTNAGC	2 cut(s)	180, 545
Bpu14I	TTCGAA	1 cut(s)	985
BpuEI	CTTGAG	5 cut(s)	434, 658, 1697, 2114, 2119
BpuMI	CCSGG	3 cut(s)	1435, 2260, 2261
BsaAI	YACGTR	2 cut(s)	397, 508
BsaJI	CCNNGG	4 cut(s)	31, 999, 1433, 2259
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	1294, 1324
Bsc4I	CCNNNNNNNGG	6 cut(s)	191, 1229, 1614, 1816, 2216, 2320
Bse1I	ACTGG	5 cut(s)	25, 71, 444, 706, 1313
Bse21I	CCTNAGG	1 cut(s)	210
Bse3DI	GCAATG	6 cut(s)	264, 588, 760, 1244, 1835, 2383
BseAI	TCCGGA	1 cut(s)	151
BseBI	CCWGG	4 cut(s)	1152, 1658, 1769, 1811
BseDI	CCNNGG	4 cut(s)	31, 999, 1433, 2259
BseGI	GGATG	9 cut(s)	42, 262, 560, 1238, 1359, 1414, 1459, 1649, 2164
BseLI	CCNNNNNNNGG	6 cut(s)	191, 1229, 1614, 1816, 2216, 2320
BseMI	GCAATG	6 cut(s)	264, 588, 760, 1244, 1835, 2383
BseMII	CTCAG	4 cut(s)	171, 962, 1535, 2310
BseNI	ACTGG	5 cut(s)	25, 71, 444, 706, 1313
BsePI	GCGCGC	1 cut(s)	2349
BseRI	GAGGAG	6 cut(s)	371, 676, 1859, 2042, 2122, 2336
BsgI	GTGCAG	1 cut(s)	1860
Bsh1236I	CGCG	2 cut(s)	2298, 2351
BshFI	GGCC	6 cut(s)	390, 559, 1129, 1481, 1928, 2033
BshNI	GGYRCC	1 cut(s)	1232
BsiHKCI	CYCGRG	1 cut(s)	2259
BsiSI	CCGG	3 cut(s)	152, 1435, 2260
BslFI	GGGAC	3 cut(s)	1376, 2276, 2287
BslI	CCNNNNNNNGG	6 cut(s)	191, 1229, 1614, 1816, 2216, 2320
BsmAI	GTCTC	3 cut(s)	46, 1380, 2281
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	3 cut(s)	1376, 2276, 2287
BsnI	GGCC	6 cut(s)	390, 559, 1129, 1481, 1928, 2033
BsoBI	CYCGRG	1 cut(s)	2259
Bsp119I	TTCGAA	1 cut(s)	985
Bsp1286I	GDGCHC	2 cut(s)	186, 920
Bsp13I	TCCGGA	1 cut(s)	151
Bsp1407I	TGTACA	1 cut(s)	626
Bsp143I	GATC	8 cut(s)	259, 534, 640, 1144, 1832, 2037, 2082, 2442
BspACI	CCGC	8 cut(s)	191, 331, 387, 402, 994, 1565, 1939, 2296
BspANI	GGCC	6 cut(s)	390, 559, 1129, 1481, 1928, 2033
BspCNI	CTCAG	4 cut(s)	172, 961, 1536, 2311
BspEI	TCCGGA	1 cut(s)	151
BspFNI	CGCG	2 cut(s)	2298, 2351
BspLI	GGNNCC	4 cut(s)	232, 919, 1234, 2264
BspMAI	CTGCAG	2 cut(s)	1443, 1452
BspMI	ACCTGC	1 cut(s)	1489
BspOI	GCTAGC	2 cut(s)	104, 623
BspPI	GGATC	3 cut(s)	254, 1840, 2450
BspQI	GCTCTTC	1 cut(s)	1917
BspT104I	TTCGAA	1 cut(s)	985
BspT107I	GGYRCC	1 cut(s)	1232
BsrDI	GCAATG	6 cut(s)	264, 588, 760, 1244, 1835, 2383
BsrGI	TGTACA	1 cut(s)	626
BsrI	ACTGG	5 cut(s)	25, 71, 444, 706, 1313
BssECI	CCNNGG	4 cut(s)	31, 999, 1433, 2259
BssHII	GCGCGC	1 cut(s)	2349
BssMI	GATC	8 cut(s)	259, 534, 640, 1144, 1832, 2037, 2082, 2442
BssT1I	CCWWGG	2 cut(s)	31, 999
Bst2UI	CCWGG	4 cut(s)	1152, 1658, 1769, 1811
Bst4CI	ACNGT	4 cut(s)	199, 353, 1219, 1352
Bst6I	CTCTTC	7 cut(s)	44, 706, 1019, 1593, 1607, 1917, 2073
BstAPI	GCANNNNNTGC	2 cut(s)	1447, 1907
BstAUI	TGTACA	1 cut(s)	626
BstBAI	YACGTR	2 cut(s)	397, 508
BstBI	TTCGAA	1 cut(s)	985
BstDEI	CTNAG	8 cut(s)	180, 210, 545, 948, 1305, 1544, 2150, 2319
BstENI	CCTNNNNNAGG	3 cut(s)	1227, 2214, 2318
BstF5I	GGATG	9 cut(s)	42, 262, 560, 1238, 1359, 1414, 1459, 1649, 2164
BstFNI	CGCG	2 cut(s)	2298, 2351
BstHHI	GCGC	2 cut(s)	2351, 2353
BstKTI	GATC	8 cut(s)	262, 537, 643, 1147, 1835, 2040, 2085, 2445
BstMAI	GTCTC	3 cut(s)	46, 1380, 2281
BstMBI	GATC	8 cut(s)	259, 534, 640, 1144, 1832, 2037, 2082, 2442
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 371, 1010, 1444, 1447, 1846, 1907, 2310
BstNI	CCWGG	4 cut(s)	1152, 1658, 1769, 1811
BstNSI	RCATGY	3 cut(s)	273, 1637, 2065
BstPAI	GACNNNNGTC	1 cut(s)	1313
BstSCI	CCNGG	7 cut(s)	1150, 1433, 1656, 1767, 1809, 2258, 2259
BstSFI	CTRYAG	4 cut(s)	114, 1439, 1448, 1746
BstSNI	TACGTA	1 cut(s)	397
BstUI	CGCG	2 cut(s)	2298, 2351
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
Bsu36I	CCTNAGG	1 cut(s)	210
BsuI	GTATCC	2 cut(s)	457, 1252
BsuRI	GGCC	6 cut(s)	390, 559, 1129, 1481, 1928, 2033
BtsCI	GGATG	9 cut(s)	42, 262, 560, 1238, 1359, 1414, 1459, 1649, 2164
BtsIMutI	CAGTG	6 cut(s)	358, 437, 544, 1541, 1796, 2337
BveI	ACCTGC	1 cut(s)	1489
CaiI	CAGNNNCTG	4 cut(s)	77, 980, 1273, 1447
CfoI	GCGC	2 cut(s)	2351, 2353
Cfr13I	GGNCC	6 cut(s)	996, 1029, 1479, 1807, 2263, 2293
Cfr9I	CCCGGG	1 cut(s)	2259
Csp6I	GTAC	7 cut(s)	18, 195, 349, 517, 627, 1220, 1233
CviAII	CATG	6 cut(s)	270, 1609, 1634, 1815, 2062, 2418
CviQI	GTAC	7 cut(s)	18, 195, 349, 517, 627, 1220, 1233
DdeI	CTNAG	8 cut(s)	180, 210, 545, 948, 1305, 1544, 2150, 2319
DpnI	GATC	8 cut(s)	261, 536, 642, 1146, 1834, 2039, 2084, 2444
DpnII	GATC	8 cut(s)	259, 534, 640, 1144, 1832, 2037, 2082, 2442
DraIII	CACNNNGTG	1 cut(s)	511
Eam1104I	CTCTTC	7 cut(s)	44, 706, 1019, 1593, 1607, 1917, 2073
EarI	CTCTTC	7 cut(s)	44, 706, 1019, 1593, 1607, 1917, 2073
EciI	GGCGGA	1 cut(s)	1009
Eco105I	TACGTA	1 cut(s)	397
Eco130I	CCWWGG	2 cut(s)	31, 999
Eco24I	GRGCYC	2 cut(s)	186, 920
Eco32I	GATATC	1 cut(s)	159
Eco47I	GGWCC	5 cut(s)	996, 1029, 1807, 2263, 2293
Eco57I	CTGAAG	5 cut(s)	126, 984, 1295, 1676, 2073
Eco72I	CACGTG	1 cut(s)	508
Eco81I	CCTNAGG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	2259
EcoNI	CCTNNNNNAGG	3 cut(s)	1227, 2214, 2318
EcoO109I	RGGNCCY	1 cut(s)	1029
EcoRII	CCWGG	4 cut(s)	1150, 1656, 1767, 1809
EcoRV	GATATC	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	31, 999
EcoT22I	ATGCAT	2 cut(s)	1639, 1651
EcoT38I	GRGCYC	2 cut(s)	186, 920
ErhI	CCWWGG	2 cut(s)	31, 999
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	6 cut(s)	273, 1612, 1637, 1818, 2065, 2421
FalI	AAGNNNNNCTT	2 cut(s)	1016, 1048
FaqI	GGGAC	3 cut(s)	1376, 2276, 2287
FatI	CATG	6 cut(s)	269, 1608, 1633, 1814, 2061, 2417
FauI	CCCGC	3 cut(s)	184, 1558, 1932
FauNDI	CATATG	1 cut(s)	1366
FbaI	TGATCA	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	1510
FokI	GGATG	9 cut(s)	49, 269, 547, 1225, 1346, 1421, 1466, 1636, 2171
FriOI	GRGCYC	2 cut(s)	186, 920
GlaI	GCGC	2 cut(s)	2350, 2352
GsuI	CTGGAG	3 cut(s)	1173, 1296, 1751
HaeIII	GGCC	6 cut(s)	390, 559, 1129, 1481, 1928, 2033
HapII	CCGG	3 cut(s)	152, 1435, 2260
HhaI	GCGC	2 cut(s)	2351, 2353
Hin1II	CATG	6 cut(s)	273, 1612, 1637, 1818, 2065, 2421
Hin6I	GCGC	2 cut(s)	2349, 2351
HinP1I	GCGC	2 cut(s)	2349, 2351
HincII	GTYRAC	2 cut(s)	1215, 2250
HindII	GTYRAC	2 cut(s)	1215, 2250
HindIII	AAGCTT	2 cut(s)	2010, 2170
HinfI	GANTC	8 cut(s)	410, 692, 1169, 1283, 1309, 1751, 1979, 2129
HpaI	GTTAAC	1 cut(s)	2250
HpaII	CCGG	3 cut(s)	152, 1435, 2260
HphI	GGTGA	1 cut(s)	1708
Hpy166II	GTNNAC	7 cut(s)	176, 519, 1159, 1215, 1511, 1699, 2250
Hpy8I	GTNNAC	7 cut(s)	176, 519, 1159, 1215, 1511, 1699, 2250
HpyCH4III	ACNGT	4 cut(s)	199, 353, 1219, 1352
HpyCH4IV	ACGT	3 cut(s)	396, 507, 1204
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 371, 1010, 1444, 1447, 1846, 1907, 2310
HpyF3I	CTNAG	8 cut(s)	180, 210, 545, 948, 1305, 1544, 2150, 2319
HpySE526I	ACGT	3 cut(s)	396, 507, 1204
Hsp92II	CATG	6 cut(s)	273, 1612, 1637, 1818, 2065, 2421
HspAI	GCGC	2 cut(s)	2349, 2351
Kpn2I	TCCGGA	1 cut(s)	151
KpnI	GGTACC	1 cut(s)	1236
Ksp22I	TGATCA	1 cut(s)	534
KspAI	GTTAAC	1 cut(s)	2250
Kzo9I	GATC	8 cut(s)	259, 534, 640, 1144, 1832, 2037, 2082, 2442
LguI	GCTCTTC	1 cut(s)	1917
LmnI	GCTCC	6 cut(s)	230, 689, 923, 977, 1630, 1846
LweI	GCATC	6 cut(s)	460, 1368, 1658, 2149, 2362, 2395
MaeII	ACGT	3 cut(s)	396, 507, 1204
MaeIII	GTNAC	5 cut(s)	128, 591, 602, 774, 1183
MalI	GATC	8 cut(s)	261, 536, 642, 1146, 1834, 2039, 2084, 2444
MboI	GATC	8 cut(s)	259, 534, 640, 1144, 1832, 2037, 2082, 2442
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	2 cut(s)	186, 920
MlyI	GAGTC	4 cut(s)	404, 1303, 1973, 2123
MmeI	TCCRAC	1 cut(s)	1448
Mph1103I	ATGCAT	2 cut(s)	1639, 1651
MroI	TCCGGA	1 cut(s)	151
MseI	TTAA	6 cut(s)	6, 710, 1536, 2015, 2249, 2429
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	1757
MspI	CCGG	3 cut(s)	152, 1435, 2260
MspR9I	CCNGG	7 cut(s)	1152, 1435, 1658, 1769, 1811, 2260, 2261
MvaI	CCWGG	4 cut(s)	1152, 1658, 1769, 1811
MvnI	CGCG	2 cut(s)	2298, 2351
MwoI	GCNNNNNNNGC	8 cut(s)	110, 371, 1010, 1444, 1447, 1846, 1907, 2310
NciI	CCSGG	3 cut(s)	1435, 2260, 2261
NdeI	CATATG	1 cut(s)	1366
NdeII	GATC	8 cut(s)	259, 534, 640, 1144, 1832, 2037, 2082, 2442
NheI	GCTAGC	2 cut(s)	100, 619
NlaIII	CATG	6 cut(s)	273, 1612, 1637, 1818, 2065, 2421
NlaIV	GGNNCC	4 cut(s)	232, 919, 1234, 2264
NmuCI	GTSAC	2 cut(s)	602, 774
NsiI	ATGCAT	2 cut(s)	1639, 1651
NspI	RCATGY	3 cut(s)	273, 1637, 2065
NspV	TTCGAA	1 cut(s)	985
PaeI	GCATGC	2 cut(s)	273, 1637
PauI	GCGCGC	1 cut(s)	2349
PciSI	GCTCTTC	1 cut(s)	1917
PfeI	GAWTC	4 cut(s)	692, 1169, 1283, 1751
PfoI	TCCNGGA	2 cut(s)	1150, 1767
PleI	GAGTC	4 cut(s)	404, 1303, 1973, 2123
PmaCI	CACGTG	1 cut(s)	508
PmlI	CACGTG	1 cut(s)	508
PpsI	GAGTC	4 cut(s)	404, 1303, 1973, 2123
Ppu21I	YACGTR	2 cut(s)	397, 508
PpuMI	RGGWCCY	1 cut(s)	1029
PshAI	GACNNNNGTC	1 cut(s)	1313
Psp5II	RGGWCCY	1 cut(s)	1029
Psp6I	CCWGG	4 cut(s)	1150, 1656, 1767, 1809
PspCI	CACGTG	1 cut(s)	508
PspGI	CCWGG	4 cut(s)	1150, 1656, 1767, 1809
PspN4I	GGNNCC	4 cut(s)	232, 919, 1234, 2264
PspPI	GGNCC	6 cut(s)	996, 1029, 1479, 1807, 2263, 2293
PspPPI	RGGWCCY	1 cut(s)	1029
PstI	CTGCAG	2 cut(s)	1443, 1452
PstNI	CAGNNNCTG	4 cut(s)	77, 980, 1273, 1447
PsuI	RGATCY	1 cut(s)	640
PteI	GCGCGC	1 cut(s)	2349
PvuII	CAGCTG	1 cut(s)	1757
RsaI	GTAC	7 cut(s)	19, 196, 350, 518, 628, 1221, 1234
RsaNI	GTAC	7 cut(s)	18, 195, 349, 517, 627, 1220, 1233
RseI	CAYNNNNRTG	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	1917
SaqAI	TTAA	6 cut(s)	6, 710, 1536, 2015, 2249, 2429
Sau3AI	GATC	8 cut(s)	259, 534, 640, 1144, 1832, 2037, 2082, 2442
Sau96I	GGNCC	6 cut(s)	996, 1029, 1479, 1807, 2263, 2293
SchI	GAGTC	4 cut(s)	404, 1303, 1973, 2123
ScrFI	CCNGG	7 cut(s)	1152, 1435, 1658, 1769, 1811, 2260, 2261
SduI	GDGCHC	2 cut(s)	186, 920
SfaNI	GCATC	6 cut(s)	460, 1368, 1658, 2149, 2362, 2395
SfcI	CTRYAG	4 cut(s)	114, 1439, 1448, 1746
SfuI	TTCGAA	1 cut(s)	985
SinI	GGWCC	5 cut(s)	996, 1029, 1807, 2263, 2293
SmaI	CCCGGG	1 cut(s)	2261
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	5 cut(s)	449, 673, 1712, 2093, 2134
SmoI	CTYRAG	5 cut(s)	449, 673, 1712, 2093, 2134
SnaBI	TACGTA	1 cut(s)	397
SpeI	ACTAGT	1 cut(s)	1187
SphI	GCATGC	2 cut(s)	273, 1637
SsiI	CCGC	8 cut(s)	191, 331, 387, 402, 994, 1565, 1939, 2296
StyD4I	CCNGG	7 cut(s)	1150, 1433, 1656, 1767, 1809, 2258, 2259
StyI	CCWWGG	2 cut(s)	31, 999
TaaI	ACNGT	4 cut(s)	199, 353, 1219, 1352
TaiI	ACGT	3 cut(s)	399, 510, 1207
TaqI	TCGA	1 cut(s)	985
TatI	WGTACW	2 cut(s)	516, 626
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	4 cut(s)	692, 1169, 1283, 1751
Tru1I	TTAA	6 cut(s)	6, 710, 1536, 2015, 2249, 2429
Tru9I	TTAA	6 cut(s)	6, 710, 1536, 2015, 2249, 2429
TscAI	CASTG	6 cut(s)	358, 444, 544, 1548, 1803, 2337
TseFI	GTSAC	2 cut(s)	602, 774
Tsp45I	GTSAC	2 cut(s)	602, 774
TspDTI	ATGAA	8 cut(s)	749, 933, 1182, 1625, 1904, 2007, 2406, 2417
TspGWI	ACGGA	1 cut(s)	184
TspMI	CCCGGG	1 cut(s)	2259
TspRI	CASTG	6 cut(s)	358, 444, 544, 1548, 1803, 2337
VpaK11BI	GGWCC	5 cut(s)	996, 1029, 1807, 2263, 2293
XagI	CCTNNNNNAGG	3 cut(s)	1227, 2214, 2318
XapI	RAATTY	5 cut(s)	443, 760, 821, 1571, 2254
XbaI	TCTAGA	2 cut(s)	161, 380
XceI	RCATGY	3 cut(s)	273, 1637, 2065
XmaI	CCCGGG	1 cut(s)	2259
XmiI	GTMKAC	1 cut(s)	1510
Zsp2I	ATGCAT	2 cut(s)	1639, 1651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.