Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8265653.1

Orthogroup ID

OG0002982

Physical Location & Seq

Genomic Coordinates Forward (+)

190 .. 711

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8265653.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggaaaaggaaacaatactcgcacaggctgactctatgagaaatgaaagagaacaacgtgaagctttaacacaagtggaggaggccaagatcaaacacaaggctgaagatgacatgcagaagtatgtggaagagatcaaattacttgagagcaagttatctgaacttcaaacaaattctgactcctcaagaatagcagcgctaagaagggatgccgctggaagctttggggcttgcctgtcagacagaaaaaatgtgaagcctactaagggaagccaaagttctaccagcttcaagaagttaacaaatttccgggaccatttggggactgaaagtttgagacaggaccgcgagtgcgtgatgtgcctatctgaggagatgtcagtggttttcctcccgtgcgcgcatcaggttgtttgtgcaaaatgcaatgagctgcatctgaaacaaggaatgaaggactgcccttcatgtagggctttaattcagcgaaggatcaaagtgcaatatgctcgtccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

173

Amino Acids

19.69

Weight (kDa)

8.61

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03365 AT1G03365 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000
fragaria_vesca	FvH4_2g24221 FvH4_2g24221 FvH4_2g24221
malus_domestica	MD03G1272000.v1.1 MD11G1292600.v1.1
prunus_persica	Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1
pyrus_communis	pycom03g21660 pycom11g25900
rosa_chinensis	RchiOBHm_Chr6g0292011
rosa_laevigata	RLG00000012070
rosa_multiflora	Rmu_co8265653.1_g000001 Rmu_co8382791.1_g000001 Rmu_sc0008666.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175490 Rroxscaffold_7G00178030
rosa_rugosa	Rorug06G0222500 Rorug06G0222600 Rorug06G0222700 Rorug06G0222800 Rorug06G0222900
rosa_samantha	Rh6AG336400 Rh6BG343700 Rh6CG350000 Rh6DG336700
rosa_wichuraiana	Rw6G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	351, 404
AciI	CCGC	2 cut(s)	216, 349
AclWI	GGATC	1 cut(s)	503
AcsI	RAATTY	2 cut(s)	175, 307
AcuI	CTGAAG	1 cut(s)	126
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	269, 373
AgsI	TTSAA	2 cut(s)	170, 295
AluBI	AGCT	4 cut(s)	65, 225, 291, 436
AluI	AGCT	4 cut(s)	65, 225, 291, 436
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	503
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	197, 436
ApoI	RAATTY	2 cut(s)	175, 307
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AspLEI	GCGC	3 cut(s)	202, 404, 406
AspS9I	GGNCC	2 cut(s)	316, 346
AsuC2I	CCSGG	1 cut(s)	314
AvaII	GGWCC	2 cut(s)	316, 346
BbvI	GCAGC	2 cut(s)	209, 423
BcgI	CGANNNNNNTGC	1 cut(s)	494
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	334
BfoI	RGCGCY	1 cut(s)	203
BisI	GCNGC	3 cut(s)	198, 216, 437
BlsI	GCNGC	3 cut(s)	199, 217, 438
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	2 cut(s)	316, 346
BmgT120I	GGNCC	2 cut(s)	316, 346
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	3 cut(s)	202, 415, 448
BpuEI	CTTGAG	2 cut(s)	167, 172
BpuMI	CCSGG	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 373
Bse3DI	GCAATG	1 cut(s)	436
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	269, 373
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	363
BsePI	GCGCGC	1 cut(s)	402
BseRI	GAGGAG	3 cut(s)	95, 175, 389
BseXI	GCAGC	2 cut(s)	209, 423
Bsh1236I	CGCG	2 cut(s)	351, 404
BshFI	GGCC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	2 cut(s)	329, 340
BslI	CCNNNNNNNGG	2 cut(s)	269, 373
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	2 cut(s)	329, 340
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	90, 135, 495
BspACI	CCGC	2 cut(s)	216, 349
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	2 cut(s)	351, 404
BspLI	GGNNCC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	436
BssHII	GCGCGC	1 cut(s)	402
BssMI	GATC	3 cut(s)	90, 135, 495
Bst6I	CTCTTC	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	235, 404
BstDEI	CTNAG	3 cut(s)	203, 267, 372
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	2 cut(s)	351, 404
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	3 cut(s)	202, 404, 406
BstKTI	GATC	3 cut(s)	93, 138, 498
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	3 cut(s)	90, 135, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	312
BstUI	CGCG	2 cut(s)	351, 404
BstV1I	GCAGC	2 cut(s)	209, 423
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	235, 404
CfoI	GCGC	3 cut(s)	202, 404, 406
Cfr13I	GGNCC	2 cut(s)	316, 346
CviAII	CATG	2 cut(s)	115, 471
DdeI	CTNAG	3 cut(s)	203, 267, 372
DpnI	GATC	3 cut(s)	92, 137, 497
DpnII	GATC	3 cut(s)	90, 135, 495
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	316, 346
Eco47III	AGCGCT	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	126
EcoNI	CCTNNNNNAGG	1 cut(s)	371
FaeI	CATG	2 cut(s)	118, 474
FaiI	YATR	6 cut(s)	38, 116, 126, 472, 510, 520
FaqI	GGGAC	2 cut(s)	329, 340
FatI	CATG	2 cut(s)	114, 470
Fnu4HI	GCNGC	3 cut(s)	198, 216, 437
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	3 cut(s)	198, 216, 437
GlaI	GCGC	3 cut(s)	201, 403, 405
GluI	GCNGC	3 cut(s)	198, 216, 437
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	313
HhaI	GCGC	3 cut(s)	202, 404, 406
Hin1II	CATG	2 cut(s)	118, 474
Hin6I	GCGC	3 cut(s)	200, 402, 404
HinP1I	GCGC	3 cut(s)	200, 402, 404
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HindIII	AAGCTT	2 cut(s)	63, 223
HinfI	GANTC	2 cut(s)	32, 182
HpaI	GTTAAC	1 cut(s)	303
HpaII	CCGG	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	5 cut(s)	163, 181, 244, 373, 444
Hpy188III	TCNNGA	2 cut(s)	189, 295
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	4 cut(s)	201, 451, 477, 486
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	5 cut(s)	118, 422, 429, 439, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	363
HpyF3I	CTNAG	3 cut(s)	203, 267, 372
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	118, 474
HspAI	GCGC	3 cut(s)	200, 402, 404
KspAI	GTTAAC	1 cut(s)	303
Kzo9I	GATC	3 cut(s)	90, 135, 495
LpnPI	CCDG	7 cut(s)	11, 204, 251, 301, 326, 329, 395
Lsp1109I	GCAGC	2 cut(s)	209, 423
LweI	GCATC	3 cut(s)	202, 415, 448
MaeII	ACGT	1 cut(s)	58
MalI	GATC	3 cut(s)	92, 137, 497
MboI	GATC	3 cut(s)	90, 135, 495
MboII	GAAGA	2 cut(s)	119, 143
MluCI	AATT	4 cut(s)	140, 175, 307, 483
MlyI	GAGTC	2 cut(s)	26, 176
MnlI	CCTC	5 cut(s)	73, 76, 196, 367, 404
MseI	TTAA	3 cut(s)	68, 302, 482
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	1 cut(s)	314
MvnI	CGCG	2 cut(s)	351, 404
MwoI	GCNNNNNNNGC	1 cut(s)	363
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	3 cut(s)	90, 135, 495
NlaIII	CATG	2 cut(s)	118, 474
NlaIV	GGNNCC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	118
PauI	GCGCGC	1 cut(s)	402
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	3 cut(s)	199, 217, 438
PleI	GAGTC	2 cut(s)	26, 176
PpsI	GAGTC	2 cut(s)	26, 176
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	2 cut(s)	316, 346
PteI	GCGCGC	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	68, 302, 482
SatI	GCNGC	3 cut(s)	198, 216, 437
Sau3AI	GATC	3 cut(s)	90, 135, 495
Sau96I	GGNCC	2 cut(s)	316, 346
SchI	GAGTC	2 cut(s)	26, 176
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	6 cut(s)	61, 67, 227, 293, 414, 438
SfaNI	GCATC	3 cut(s)	202, 415, 448
SinI	GGWCC	2 cut(s)	316, 346
SmlI	CTYRAG	2 cut(s)	146, 187
SmoI	CTYRAG	2 cut(s)	146, 187
Sse9I	AATT	4 cut(s)	140, 175, 307, 483
SsiI	CCGC	2 cut(s)	216, 349
StyD4I	CCNGG	1 cut(s)	312
TaiI	ACGT	1 cut(s)	61
TasI	AATT	4 cut(s)	140, 175, 307, 483
TauI	GCSGC	1 cut(s)	218
Tru1I	TTAA	3 cut(s)	68, 302, 482
Tru9I	TTAA	3 cut(s)	68, 302, 482
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	2 cut(s)	197, 436
TspDTI	ATGAA	3 cut(s)	60, 459, 470
TspRI	CASTG	1 cut(s)	390
VpaK11BI	GGWCC	2 cut(s)	316, 346
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	2 cut(s)	175, 307
XceI	RCATGY	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.