Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002982

Physical Location & Seq

Genomic Coordinates Forward (+)

35612281 .. 35613447

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0222700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGTGTCGATTTATATAAATTGTGGCAGGTCCTTACCACATCAGATTGGTCATCTTCCAAATTTAGAGATATTAAACCTCGGTGGGAATAACCTCAATGAGGTCATCCCATCCTTAATCTTCAATATGTCCACAATAGCAGTAATATCGCTTTTCGACAATCAGCTCTCAGGCAACCTTCCACCAAACACAGGCCTTGGCCTTCCAAACCTACAACGCTTCTATCGAGGAGGAAATAAACTTAGCGGAGCAATCCCCAAATCTTTGTCCAATGCTTCTAACCTGGAGGACATAGACCTAGGCAGCAACCTATTATTTGGCGTTATTCCTAGCACCCTATGTACCTTGACAAAACTTCAGCGGCTTCAACTATTTGATAATAACCTGACCGTCAGTACTTCGACTCCAGAACTGGATGTTCTCTTTTGTTTGGCAAATCTTCGCAACTTGAGGAGACTAGACTTCTCAGTGAATCCATTAGATGCCAACCTTCCTATTTCCTTTACGAATACATCTCTTCAATATATTTATTTTTACAACTGCAACATGAGGGGTGAAATTCCCAATGACATCGGCAACTTGAGCAGCTTGATAGTATTATCTCTGGTAAAGAATCAATTAAGTGGATTGGTTCCAGCCTCAATAGGAAGAATCCGAAACCTCCAAGGTCTATATTTGGAAAGTAACACATTTCAAGGACACATGCCAGATGAACTTTGCCAACTGAAAAACCTAGCTTCTTTGGTTTTGGCTGGCAATCGACTGTCTGGCTCTATACCTTCATGCATCGGCAATCTAACTGGAGCTCTAAGGATTCTATCATTGGAGTCTAATTTGTTAACTTCTACAGTACCATCTACCTTGTGGGGACTTACATATATCCTGTACTTGAACTTGTCATCGAATTCTCTGATCGGGTCTATCGGAGAAGGTGTTGGTAATTTGAAAGTTGCCACAGATATAGATTTTTCAAACAACCGATTATCCGGTGGTATAGCAAGCAGCGTTGGTGGACTTCAGAACTTGGTCAATCTGTCCTTGGCAAATAATAAACTACAAGGCGCCATTCCTACTTCACTTGGCAATTGCATAAGCCTGGAATCTTTGGACTTATCCAAAAACAACTTATCAGCAGTGATTCCCAAGTCTCTTTCAGCGCTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009987 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

388

Amino Acids

41.47

Weight (kDa)

6.81

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	172 - 252	1.4e-07	Leucine-rich repeat region
LRR_8	PF13855	196 - 255	9.8e-07	Leucine rich repeat
LRR_8	PF13855	244 - 304	5e-06	Leucine rich repeat
LRR_14	PF23598	269 - 384	3.6e-07	Leucine-rich repeat region
LRR_8	PF13855	341 - 387	5.3e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03365 AT1G03365 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000 AT4G03000
fragaria_vesca	FvH4_2g24221 FvH4_2g24221 FvH4_2g24221
malus_domestica	MD03G1272000.v1.1 MD11G1292600.v1.1
prunus_persica	Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1 Prupe.8G248200_v2.0.a1
pyrus_communis	pycom03g21660 pycom11g25900
rosa_chinensis	RchiOBHm_Chr6g0292011
rosa_laevigata	RLG00000012070
rosa_multiflora	Rmu_co8265653.1_g000001 Rmu_co8382791.1_g000001 Rmu_sc0008666.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175490 Rroxscaffold_7G00178030
rosa_rugosa	Rorug06G0222500 Rorug06G0222600 Rorug06G0222700 Rorug06G0222800 Rorug06G0222900
rosa_samantha	Rh6AG336400 Rh6BG343700 Rh6CG350000 Rh6DG336700
rosa_wichuraiana	Rw6G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	1061
AciI	CCGC	2 cut(s)	246, 361
AcsI	RAATTY	3 cut(s)	61, 558, 904
AcuI	CTGAAG	2 cut(s)	341, 1001
AcyI	GRCGYC	1 cut(s)	1062
AfaI	GTAC	4 cut(s)	343, 397, 852, 887
AfeI	AGCGCT	1 cut(s)	1158
AfiI	CCNNNNNNNGG	2 cut(s)	100, 191
AgsI	TTSAA	7 cut(s)	124, 368, 521, 695, 892, 946, 972
AjnI	CCWGG	2 cut(s)	282, 1095
AluBI	AGCT	4 cut(s)	166, 588, 737, 806
AluI	AGCT	4 cut(s)	166, 588, 737, 806
Alw21I	GWGCWC	1 cut(s)	808
Alw26I	GTCTC	2 cut(s)	448, 1152
Aor51HI	AGCGCT	1 cut(s)	1158
AoxI	GGCC	2 cut(s)	193, 199
ApeKI	GCWGC	3 cut(s)	303, 585, 1002
ApoI	RAATTY	3 cut(s)	61, 558, 904
AspA2I	CCTAGG	1 cut(s)	298
AspLEI	GCGC	2 cut(s)	1064, 1159
AspS9I	GGNCC	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	30
AvrII	CCTAGG	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	1061
BanII	GRGCYC	1 cut(s)	808
Bbv12I	GWGCWC	1 cut(s)	808
BbvI	GCAGC	3 cut(s)	315, 597, 1014
BccI	CCATC	2 cut(s)	118, 862
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BciT130I	CCWGG	2 cut(s)	284, 1097
BcoDI	GTCTC	2 cut(s)	448, 1152
BfaI	CTAG	4 cut(s)	299, 330, 458, 734
BfmI	CTRYAG	1 cut(s)	846
BfoI	RGCGCY	2 cut(s)	1065, 1160
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	4 cut(s)	304, 362, 586, 1003
BlnI	CCTAGG	1 cut(s)	298
BlsI	GCNGC	4 cut(s)	305, 363, 587, 1004
BmcAI	AGTACT	1 cut(s)	397
Bme1390I	CCNGG	2 cut(s)	284, 1097
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	633, 1063
BmrFI	CCNGG	2 cut(s)	284, 1097
BmsI	GCATC	2 cut(s)	472, 795
BpmI	CTGGAG	3 cut(s)	305, 390, 822
BpuEI	CTTGAG	2 cut(s)	469, 601
BsaHI	GRCGYC	1 cut(s)	1062
BsaJI	CCNNGG	5 cut(s)	79, 196, 298, 664, 1038
BsaWI	WCCGGW	1 cut(s)	986
BsaXI	ACNNNNNCTCC	4 cut(s)	388, 418, 918, 948
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 191
Bse1I	ACTGG	2 cut(s)	417, 805
BseBI	CCWGG	2 cut(s)	284, 1097
BseDI	CCNNGG	5 cut(s)	79, 196, 298, 664, 1038
BseGI	GGATG	3 cut(s)	105, 110, 421
BseLI	CCNNNNNNNGG	2 cut(s)	100, 191
BseMII	CTCAG	2 cut(s)	183, 480
BseNI	ACTGG	2 cut(s)	417, 805
BseRI	GAGGAG	2 cut(s)	243, 466
BseXI	GCAGC	3 cut(s)	315, 597, 1014
BshFI	GGCC	2 cut(s)	195, 201
BshNI	GGYRCC	1 cut(s)	1061
BsiHKAI	GWGCWC	1 cut(s)	808
BsiSI	CCGG	1 cut(s)	987
BslFI	GGGAC	1 cut(s)	882
BslI	CCNNNNNNNGG	2 cut(s)	100, 191
BsmAI	GTCTC	2 cut(s)	448, 1152
BsmFI	GGGAC	1 cut(s)	882
BsnI	GGCC	2 cut(s)	195, 201
Bsp1286I	GDGCHC	1 cut(s)	808
Bsp143I	GATC	1 cut(s)	912
BspACI	CCGC	2 cut(s)	246, 361
BspANI	GGCC	2 cut(s)	195, 201
BspCNI	CTCAG	2 cut(s)	182, 479
BspLI	GGNNCC	2 cut(s)	633, 1063
BspMI	ACCTGC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	1061
BsrI	ACTGG	2 cut(s)	417, 805
BssECI	CCNNGG	5 cut(s)	79, 196, 298, 664, 1038
BssMI	GATC	1 cut(s)	912
BssNI	GRCGYC	1 cut(s)	1062
BssT1I	CCWWGG	4 cut(s)	196, 298, 664, 1038
Bst2UI	CCWGG	2 cut(s)	284, 1097
Bst4CI	ACNGT	3 cut(s)	391, 765, 850
Bst6I	CTCTTC	1 cut(s)	522
BstACI	GRCGYC	1 cut(s)	1062
BstC8I	GCNNGC	2 cut(s)	754, 1000
BstDEI	CTNAG	4 cut(s)	169, 242, 466, 809
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	3 cut(s)	105, 110, 421
BstH2I	RGCGCY	2 cut(s)	1065, 1160
BstHHI	GCGC	2 cut(s)	1064, 1159
BstKTI	GATC	1 cut(s)	915
BstMAI	GTCTC	2 cut(s)	448, 1152
BstMBI	GATC	1 cut(s)	912
BstMWI	GCNNNNNNNGC	1 cut(s)	582
BstNI	CCWGG	2 cut(s)	284, 1097
BstNSI	RCATGY	1 cut(s)	706
BstSCI	CCNGG	2 cut(s)	282, 1095
BstSFI	CTRYAG	1 cut(s)	846
BstV1I	GCAGC	3 cut(s)	315, 597, 1014
BsuRI	GGCC	2 cut(s)	195, 201
BtsCI	GGATG	3 cut(s)	105, 110, 421
BtsI	GCAGTG	1 cut(s)	1140
BtsIMutI	CAGTG	2 cut(s)	474, 1140
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	754, 1000
CfoI	GCGC	2 cut(s)	1064, 1159
Cfr13I	GGNCC	1 cut(s)	30
Csp6I	GTAC	4 cut(s)	342, 396, 851, 886
CviAII	CATG	3 cut(s)	547, 703, 783
CviQI	GTAC	4 cut(s)	342, 396, 851, 886
DdeI	CTNAG	4 cut(s)	169, 242, 466, 809
DinI	GGCGCC	1 cut(s)	1063
DpnI	GATC	1 cut(s)	914
DpnII	GATC	1 cut(s)	912
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Ecl136II	GAGCTC	1 cut(s)	806
Eco130I	CCWWGG	4 cut(s)	196, 298, 664, 1038
Eco147I	AGGCCT	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	808
Eco47I	GGWCC	1 cut(s)	30
Eco47III	AGCGCT	1 cut(s)	1158
Eco53kI	GAGCTC	1 cut(s)	806
Eco57I	CTGAAG	2 cut(s)	341, 1001
EcoICRI	GAGCTC	1 cut(s)	806
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	904
EcoRII	CCWGG	2 cut(s)	282, 1095
EcoT14I	CCWWGG	4 cut(s)	196, 298, 664, 1038
EcoT22I	ATGCAT	1 cut(s)	788
EcoT38I	GRGCYC	1 cut(s)	808
EgeI	GGCGCC	1 cut(s)	1063
EheI	GGCGCC	1 cut(s)	1063
ErhI	CCWWGG	4 cut(s)	196, 298, 664, 1038
FaeI	CATG	3 cut(s)	550, 706, 786
FaqI	GGGAC	1 cut(s)	882
FatI	CATG	3 cut(s)	546, 702, 782
Fnu4HI	GCNGC	4 cut(s)	304, 362, 586, 1003
FokI	GGATG	3 cut(s)	92, 97, 428
FriOI	GRGCYC	1 cut(s)	808
Fsp4HI	GCNGC	4 cut(s)	304, 362, 586, 1003
FspBI	CTAG	4 cut(s)	299, 330, 458, 734
GlaI	GCGC	2 cut(s)	1063, 1158
GluI	GCNGC	4 cut(s)	304, 362, 586, 1003
GsuI	CTGGAG	3 cut(s)	305, 390, 822
HaeII	RGCGCY	2 cut(s)	1065, 1160
HaeIII	GGCC	2 cut(s)	195, 201
HapII	CCGG	1 cut(s)	987
HhaI	GCGC	2 cut(s)	1064, 1159
Hin1I	GRCGYC	1 cut(s)	1062
Hin1II	CATG	3 cut(s)	550, 706, 786
Hin6I	GCGC	2 cut(s)	1062, 1157
HinP1I	GCGC	2 cut(s)	1062, 1157
HincII	GTYRAC	1 cut(s)	840
HindII	GTYRAC	1 cut(s)	840
HinfI	GANTC	8 cut(s)	403, 472, 613, 651, 814, 827, 1100, 1138
HpaI	GTTAAC	1 cut(s)	840
HpaII	CCGG	1 cut(s)	987
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	3 cut(s)	132, 840, 1013
Hpy188I	TCNGA	5 cut(s)	45, 656, 912, 926, 1020
Hpy188III	TCNNGA	1 cut(s)	407
Hpy8I	GTNNAC	3 cut(s)	132, 840, 1013
HpyAV	CCTTC	5 cut(s)	188, 212, 500, 789, 923
HpyCH4III	ACNGT	3 cut(s)	391, 765, 850
HpyCH4V	TGCA	3 cut(s)	543, 786, 1089
HpyF10VI	GCNNNNNNNGC	1 cut(s)	582
HpyF3I	CTNAG	4 cut(s)	169, 242, 466, 809
Hsp92I	GRCGYC	1 cut(s)	1062
Hsp92II	CATG	3 cut(s)	550, 706, 786
HspAI	GCGC	2 cut(s)	1062, 1157
KasI	GGCGCC	1 cut(s)	1061
KspAI	GTTAAC	1 cut(s)	840
Kzo9I	GATC	1 cut(s)	912
LmnI	GCTCC	2 cut(s)	248, 803
Lsp1109I	GCAGC	3 cut(s)	315, 597, 1014
LweI	GCATC	2 cut(s)	472, 795
MaeI	CTAG	4 cut(s)	299, 330, 458, 734
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	1 cut(s)	914
MboI	GATC	1 cut(s)	912
MboII	GAAGA	5 cut(s)	47, 112, 431, 509, 660
MfeI	CAATTG	1 cut(s)	1084
MhlI	GDGCHC	1 cut(s)	808
MluCI	AATT	8 cut(s)	19, 61, 558, 617, 832, 904, 940, 1084
Mly113I	GGCGCC	1 cut(s)	1062
MlyI	GAGTC	2 cut(s)	397, 836
Mph1103I	ATGCAT	1 cut(s)	788
MseI	TTAA	4 cut(s)	74, 116, 620, 839
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	1 cut(s)	987
MspR9I	CCNGG	2 cut(s)	284, 1097
MunI	CAATTG	1 cut(s)	1084
MvaI	CCWGG	2 cut(s)	284, 1097
MwoI	GCNNNNNNNGC	1 cut(s)	582
NarI	GGCGCC	1 cut(s)	1062
NdeII	GATC	1 cut(s)	912
NlaIII	CATG	3 cut(s)	550, 706, 786
NlaIV	GGNNCC	2 cut(s)	633, 1063
NsiI	ATGCAT	1 cut(s)	788
NspI	RCATGY	1 cut(s)	706
PceI	AGGCCT	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PfeI	GAWTC	6 cut(s)	472, 613, 651, 814, 1100, 1138
PkrI	GCNGC	4 cut(s)	305, 363, 587, 1004
PleI	GAGTC	2 cut(s)	397, 835
PluTI	GGCGCC	1 cut(s)	1065
PpsI	GAGTC	2 cut(s)	397, 835
PpuMI	RGGWCCY	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	808
Psp5II	RGGWCCY	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	282, 1095
PspGI	CCWGG	2 cut(s)	282, 1095
PspN4I	GGNNCC	2 cut(s)	633, 1063
PspPI	GGNCC	1 cut(s)	30
PspPPI	RGGWCCY	1 cut(s)	30
RsaI	GTAC	4 cut(s)	343, 397, 852, 887
RsaNI	GTAC	4 cut(s)	342, 396, 851, 886
SacI	GAGCTC	1 cut(s)	808
SaqAI	TTAA	4 cut(s)	74, 116, 620, 839
SatI	GCNGC	4 cut(s)	304, 362, 586, 1003
Sau3AI	GATC	1 cut(s)	912
Sau96I	GGNCC	1 cut(s)	30
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	2 cut(s)	397, 836
ScrFI	CCNGG	2 cut(s)	284, 1097
SduI	GDGCHC	1 cut(s)	808
SfaNI	GCATC	2 cut(s)	472, 795
SfcI	CTRYAG	1 cut(s)	846
SfoI	GGCGCC	1 cut(s)	1063
SinI	GGWCC	1 cut(s)	30
SmlI	CTYRAG	2 cut(s)	448, 580
SmoI	CTYRAG	2 cut(s)	448, 580
Sse9I	AATT	8 cut(s)	19, 61, 558, 617, 832, 904, 940, 1084
SseBI	AGGCCT	1 cut(s)	195
SsiI	CCGC	2 cut(s)	246, 361
SspDI	GGCGCC	1 cut(s)	1061
SspMI	CTAG	4 cut(s)	299, 330, 458, 734
SstI	GAGCTC	1 cut(s)	808
StuI	AGGCCT	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	282, 1095
StyI	CCWWGG	4 cut(s)	196, 298, 664, 1038
TaaI	ACNGT	3 cut(s)	391, 765, 850
TaqI	TCGA	6 cut(s)	8, 156, 226, 401, 760, 902
TasI	AATT	8 cut(s)	19, 61, 558, 617, 832, 904, 940, 1084
TatI	WGTACW	2 cut(s)	395, 885
TauI	GCSGC	1 cut(s)	364
TfiI	GAWTC	6 cut(s)	472, 613, 651, 814, 1100, 1138
Tru1I	TTAA	4 cut(s)	74, 116, 620, 839
Tru9I	TTAA	4 cut(s)	74, 116, 620, 839
TscAI	CASTG	2 cut(s)	474, 1140
TseI	GCWGC	3 cut(s)	303, 585, 1002
TspDTI	ATGAA	2 cut(s)	726, 771
TspRI	CASTG	2 cut(s)	474, 1140
VpaK11BI	GGWCC	1 cut(s)	30
XagI	CCTNNNNNAGG	1 cut(s)	98
XapI	RAATTY	3 cut(s)	61, 558, 904
XceI	RCATGY	1 cut(s)	706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	861
XmaJI	CCTAGG	1 cut(s)	298
XspI	CTAG	4 cut(s)	299, 330, 458, 734
ZrmI	AGTACT	1 cut(s)	397
Zsp2I	ATGCAT	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.