Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009253

Physical Location & Seq

Genomic Coordinates Reverse (-)

42345249 .. 42347625

Gene Structure 2377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1310500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTCGCACAAATCCCTAGATTCACGGCACACTATCCAGCTCCATGGATGGAGACCTTTCCACCTGCAGCAGCAGCAGACCTCCACCCCCACCTCCAAAACCCTAGACTCCTCCGATCCCAAATCCAATGGCCTCCTCGTCCACACCAAGCGTCCCTGTTTATCCAATCGAACCACTTCATTTTCTATCGACGCCATCGACATGTCCCGGCTGACCCTGGTCGACGACGACAGGACGATCTCCGGCGGACACCATAATAGGACCGGGAGCTTTCGGTTCATCGCCAAGAAGCGGAGGCGTCGCGGGTCGAGGTCGGTTTCGGGGAGGAGTAGTGATCGGAGTGGGACCCGGAGGTGCTGCTCGGTTGGGGCTTCGGCTGCGTACGGCACGTGTTCGGATTTTCCGGTGGCGGTGGGGACGGACTCGAGTGGGGAGCTGTTTGGGAATGGGGATGCGAATTGGGCGTCGGATGTGAGCGAGGCGAGGAATTCGAGGAAGGAGAGAGATGGAGGTGGGGGGAGTGGAGAGAAGGAGAATGTGGGTGTTGGGTTTGGTCCCATTGGGGGTTTTGATGTTCAGGGGAATGAGTCCGGGTACGGCAGTGAACCGGGTTACCGCGGGGACGCGGAGTTCGGGTATGGCGATGAGTTTGATGAGGAGGAGGAGGATTCTCGGGTATTGTTTTGGGGCGATCAGTTTGGAGATGCTGATTCTCCGATGGAGACAGTAGGGGAGAATACATTTGTGGATCAAAAGTCCCATCACAGATGTCGGCGGAAGAAACATGATTGCAGAATGGTTGATGCAAGCCGAACTGGTTGGAGCATACAAAAGGCTTCTACATATCCTTTTTCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

31.41

Weight (kDa)

7.15

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02425
fragaria_vesca	FvH4_2g25690
malus_domestica	MD03G1287800.v1.1 MD11G1310500.v1.1
prunus_persica	Prupe.8G261000_v2.0.a1
pyrus_communis	pycom03g22790 pycom05g20860 pycom11g27120 pycom12g11430 pycom15g16820
rosa_chinensis	RchiOBHm_Chr6g0293961
rosa_laevigata	RLG00000011912
rosa_multiflora	Rmu_co8412691.1_g000001 Rmu_sc0005126.1_g000009 Rmu_sc0005647.1_g000005 Rmu_sc0036888.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173790
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6BG359600 Rh6CG366900 Rh6DG353300
rosa_wichuraiana	Rw6G030720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	3 cut(s)	303, 618, 626
AciI	CCGC	8 cut(s)	246, 292, 303, 410, 616, 618, 626, 775
AclWI	GGATC	2 cut(s)	110, 756
AcsI	RAATTY	1 cut(s)	487
AcvI	CACGTG	1 cut(s)	390
AcyI	GRCGYC	3 cut(s)	192, 298, 464
AfaI	GTAC	2 cut(s)	383, 596
AfiI	CCNNNNNNNGG	2 cut(s)	291, 563
AflIII	ACRYGT	2 cut(s)	201, 389
AjnI	CCWGG	1 cut(s)	216
AloI	GAACNNNNNNTCC	2 cut(s)	614, 646
AluBI	AGCT	3 cut(s)	40, 270, 436
AluI	AGCT	3 cut(s)	40, 270, 436
Alw26I	GTCTC	2 cut(s)	46, 716
AlwI	GGATC	2 cut(s)	110, 756
Ama87I	CYCGRG	2 cut(s)	424, 672
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	5 cut(s)	67, 70, 73, 357, 377
ApoI	RAATTY	1 cut(s)	487
ArsI	GACNNNNNNTTYG	4 cut(s)	449, 481, 614, 646
Asp700I	GAANNNNTTC	1 cut(s)	175
AspS9I	GGNCC	3 cut(s)	261, 345, 554
AsuC2I	CCSGG	5 cut(s)	208, 265, 349, 592, 609
AvaI	CYCGRG	2 cut(s)	424, 672
AvaII	GGWCC	3 cut(s)	261, 345, 554
BaeI	ACNNNNGTAYC	2 cut(s)	586, 619
BbrPI	CACGTG	1 cut(s)	390
BbvI	GCAGC	5 cut(s)	79, 82, 85, 344, 364
BccI	CCATC	5 cut(s)	42, 203, 500, 712, 768
BceAI	ACGGC	3 cut(s)	41, 400, 613
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	5 cut(s)	208, 265, 349, 592, 609
BcoDI	GTCTC	2 cut(s)	46, 716
BfaI	CTAG	2 cut(s)	17, 104
BfmI	CTRYAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	72
BisI	GCNGC	5 cut(s)	68, 71, 74, 358, 378
BlsI	GCNGC	5 cut(s)	69, 72, 75, 359, 379
Bme1390I	CCNGG	6 cut(s)	208, 218, 265, 349, 592, 609
Bme18I	GGWCC	3 cut(s)	261, 345, 554
BmeT110I	CYCGRG	2 cut(s)	424, 672
BmgT120I	GGNCC	3 cut(s)	261, 345, 554
BmiI	GGNNCC	3 cut(s)	346, 347, 556
BmrFI	CCNGG	6 cut(s)	208, 218, 265, 349, 592, 609
BmsI	GCATC	3 cut(s)	442, 694, 793
BoxI	GACNNNNGTC	1 cut(s)	218
BpuMI	CCSGG	5 cut(s)	208, 265, 349, 592, 609
BsaAI	YACGTR	1 cut(s)	390
BsaHI	GRCGYC	3 cut(s)	192, 298, 464
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	43, 216, 616
BsaWI	WCCGGW	1 cut(s)	403
BsaXI	ACNNNNNCTCC	4 cut(s)	316, 346, 620, 650
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 563
Bse1I	ACTGG	1 cut(s)	820
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	43, 216, 616
BseGI	GGATG	3 cut(s)	53, 457, 475
BseLI	CCNNNNNNNGG	2 cut(s)	291, 563
BseNI	ACTGG	1 cut(s)	820
BseRI	GAGGAG	6 cut(s)	100, 125, 340, 671, 674, 677
BseXI	GCAGC	5 cut(s)	79, 82, 85, 344, 364
Bsh1236I	CGCG	3 cut(s)	303, 618, 626
BshFI	GGCC	1 cut(s)	132
BsiHKCI	CYCGRG	2 cut(s)	424, 672
BsiSI	CCGG	7 cut(s)	208, 243, 264, 349, 404, 591, 608
BsiWI	CGTACG	1 cut(s)	381
BslFI	GGGAC	7 cut(s)	138, 190, 358, 430, 540, 635, 742
BslI	CCNNNNNNNGG	2 cut(s)	291, 563
BsmAI	GTCTC	2 cut(s)	46, 716
BsmFI	GGGAC	7 cut(s)	138, 190, 358, 430, 540, 635, 742
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	2 cut(s)	424, 672
Bsp143I	GATC	5 cut(s)	115, 237, 334, 691, 748
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	8 cut(s)	246, 292, 303, 410, 616, 618, 626, 775
BspANI	GGCC	1 cut(s)	132
BspFNI	CGCG	3 cut(s)	303, 618, 626
BspLI	GGNNCC	3 cut(s)	346, 347, 556
BspMAI	CTGCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	72
BspPI	GGATC	2 cut(s)	110, 756
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	820
BssECI	CCNNGG	3 cut(s)	43, 216, 616
BssMI	GATC	5 cut(s)	115, 237, 334, 691, 748
BssNI	GRCGYC	3 cut(s)	192, 298, 464
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	727
BstACI	GRCGYC	3 cut(s)	192, 298, 464
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	808
BstDSI	CCRYGG	2 cut(s)	43, 616
BstEII	GGTNACC	1 cut(s)	611
BstF5I	GGATG	3 cut(s)	53, 457, 475
BstFNI	CGCG	3 cut(s)	303, 618, 626
BstKTI	GATC	5 cut(s)	118, 240, 337, 694, 751
BstMAI	GTCTC	2 cut(s)	46, 716
BstMBI	GATC	5 cut(s)	115, 237, 334, 691, 748
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 377, 461
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	205
BstPAI	GACNNNNGTC	1 cut(s)	218
BstPI	GGTNACC	1 cut(s)	611
BstSCI	CCNGG	6 cut(s)	206, 216, 263, 347, 590, 607
BstSFI	CTRYAG	1 cut(s)	65
BstUI	CGCG	3 cut(s)	303, 618, 626
BstV1I	GCAGC	5 cut(s)	79, 82, 85, 344, 364
BstXI	CCANNNNNNTGG	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	2 cut(s)	43, 616
BtgZI	GCGATG	2 cut(s)	265, 657
BtsCI	GGATG	3 cut(s)	53, 457, 475
BtsI	GCAGTG	1 cut(s)	607
BtsIMutI	CAGTG	1 cut(s)	607
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	808
Cfr13I	GGNCC	3 cut(s)	261, 345, 554
Cfr42I	CCGCGG	1 cut(s)	619
CseI	GACGC	5 cut(s)	140, 200, 287, 453, 632
Csp6I	GTAC	2 cut(s)	382, 595
CviAII	CATG	3 cut(s)	44, 202, 785
CviJI	RGCY	9 cut(s)	40, 132, 211, 270, 371, 377, 436, 810, 836
CviKI_1	RGCY	9 cut(s)	40, 132, 211, 270, 371, 377, 436, 810, 836
CviQI	GTAC	2 cut(s)	382, 595
DpnI	GATC	5 cut(s)	117, 239, 336, 693, 750
DpnII	GATC	5 cut(s)	115, 237, 334, 691, 748
EciI	GGCGGA	2 cut(s)	261, 790
Eco130I	CCWWGG	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	3 cut(s)	261, 345, 554
Eco72I	CACGTG	1 cut(s)	390
Eco88I	CYCGRG	2 cut(s)	424, 672
Eco91I	GGTNACC	1 cut(s)	611
EcoO109I	RGGNCCY	1 cut(s)	345
EcoO65I	GGTNACC	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	3 cut(s)	47, 205, 788
FaiI	YATR	7 cut(s)	45, 203, 255, 639, 786, 827, 844
FaqI	GGGAC	7 cut(s)	138, 190, 358, 430, 540, 635, 742
FatI	CATG	3 cut(s)	43, 201, 784
FauI	CCCGC	2 cut(s)	296, 611
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	5 cut(s)	68, 71, 74, 358, 378
FokI	GGATG	3 cut(s)	60, 464, 482
Fsp4HI	GCNGC	5 cut(s)	68, 71, 74, 358, 378
FspBI	CTAG	2 cut(s)	17, 104
GluI	GCNGC	5 cut(s)	68, 71, 74, 358, 378
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	7 cut(s)	208, 243, 264, 349, 404, 591, 608
HgaI	GACGC	5 cut(s)	140, 200, 287, 453, 632
Hin1I	GRCGYC	3 cut(s)	192, 298, 464
Hin1II	CATG	3 cut(s)	47, 205, 788
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	6 cut(s)	20, 107, 422, 587, 668, 710
HpaII	CCGG	7 cut(s)	208, 243, 264, 349, 404, 591, 608
Hpy166II	GTNNAC	3 cut(s)	142, 223, 605
Hpy188I	TCNGA	5 cut(s)	115, 339, 397, 469, 717
Hpy8I	GTNNAC	3 cut(s)	142, 223, 605
Hpy99I	CGWCG	5 cut(s)	194, 227, 230, 303, 469
HpyAV	CCTTC	2 cut(s)	490, 523
HpyCH4III	ACNGT	1 cut(s)	727
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	3 cut(s)	67, 792, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 377, 461
HpySE526I	ACGT	1 cut(s)	389
Hsp92I	GRCGYC	3 cut(s)	192, 298, 464
Hsp92II	CATG	3 cut(s)	47, 205, 788
KflI	GGGWCCC	1 cut(s)	345
KspI	CCGCGG	1 cut(s)	619
Kzo9I	GATC	5 cut(s)	115, 237, 334, 691, 748
LmnI	GCTCC	4 cut(s)	45, 267, 433, 822
Lsp1109I	GCAGC	5 cut(s)	79, 82, 85, 344, 364
LweI	GCATC	3 cut(s)	442, 694, 793
MaeI	CTAG	2 cut(s)	17, 104
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	5 cut(s)	117, 239, 336, 693, 750
MboI	GATC	5 cut(s)	115, 237, 334, 691, 748
MboII	GAAGA	1 cut(s)	790
MluCI	AATT	2 cut(s)	457, 487
MlyI	GAGTC	3 cut(s)	101, 416, 596
MmeI	TCCRAC	2 cut(s)	447, 800
MroXI	GAANNNNTTC	1 cut(s)	175
MslI	CAYNNNNRTG	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	618
MspI	CCGG	7 cut(s)	208, 243, 264, 349, 404, 591, 608
MspR9I	CCNGG	6 cut(s)	208, 218, 265, 349, 592, 609
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	3 cut(s)	303, 618, 626
MwoI	GCNNNNNNNGC	3 cut(s)	73, 377, 461
NciI	CCSGG	5 cut(s)	208, 265, 349, 592, 609
NcoI	CCATGG	1 cut(s)	43
NdeII	GATC	5 cut(s)	115, 237, 334, 691, 748
NlaIII	CATG	3 cut(s)	47, 205, 788
NlaIV	GGNNCC	3 cut(s)	346, 347, 556
NspI	RCATGY	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	424
PaqCI	CACCTGC	1 cut(s)	72
PciI	ACATGT	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 639
PdmI	GAANNNNTTC	1 cut(s)	175
PfeI	GAWTC	3 cut(s)	20, 668, 710
Pfl23II	CGTACG	1 cut(s)	381
PkrI	GCNGC	5 cut(s)	69, 72, 75, 359, 379
PleI	GAGTC	3 cut(s)	101, 416, 595
PmaCI	CACGTG	1 cut(s)	390
PmlI	CACGTG	1 cut(s)	390
PpsI	GAGTC	3 cut(s)	101, 416, 595
Ppu21I	YACGTR	1 cut(s)	390
PpuMI	RGGWCCY	1 cut(s)	345
PscI	ACATGT	1 cut(s)	201
PshAI	GACNNNNGTC	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	216
PspCI	CACGTG	1 cut(s)	390
PspEI	GGTNACC	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	216
PspLI	CGTACG	1 cut(s)	381
PspN4I	GGNNCC	3 cut(s)	346, 347, 556
PspPI	GGNCC	3 cut(s)	261, 345, 554
PspPPI	RGGWCCY	1 cut(s)	345
PspXI	VCTCGAGB	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	69
RsaI	GTAC	2 cut(s)	383, 596
RsaNI	GTAC	2 cut(s)	382, 595
RseI	CAYNNNNRTG	1 cut(s)	200
SacII	CCGCGG	1 cut(s)	619
SalI	GTCGAC	1 cut(s)	221
SatI	GCNGC	5 cut(s)	68, 71, 74, 358, 378
Sau3AI	GATC	5 cut(s)	115, 237, 334, 691, 748
Sau96I	GGNCC	3 cut(s)	261, 345, 554
SchI	GAGTC	3 cut(s)	101, 416, 596
ScrFI	CCNGG	6 cut(s)	208, 218, 265, 349, 592, 609
SfaNI	GCATC	3 cut(s)	442, 694, 793
SfcI	CTRYAG	1 cut(s)	65
Sfr274I	CTCGAG	1 cut(s)	424
Sfr303I	CCGCGG	1 cut(s)	619
SgrBI	CCGCGG	1 cut(s)	619
SinI	GGWCC	3 cut(s)	261, 345, 554
SlaI	CTCGAG	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	2 cut(s)	457, 487
SsiI	CCGC	8 cut(s)	246, 292, 303, 410, 616, 618, 626, 775
SspMI	CTAG	2 cut(s)	17, 104
StyD4I	CCNGG	6 cut(s)	206, 216, 263, 347, 590, 607
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	727
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	7 cut(s)	169, 189, 198, 222, 308, 425, 491
TasI	AATT	2 cut(s)	457, 487
TfiI	GAWTC	3 cut(s)	20, 668, 710
TscAI	CASTG	1 cut(s)	607
TseI	GCWGC	5 cut(s)	67, 70, 73, 357, 377
TspDTI	ATGAA	2 cut(s)	168, 268
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	607
VpaK11BI	GGWCC	3 cut(s)	261, 345, 554
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	175
XspI	CTAG	2 cut(s)	17, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.