Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009253

Physical Location & Seq

Genomic Coordinates Reverse (-)

23590155 .. 23590681

Gene Structure 527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCCTCCTCGTCCACACCAAGCGCCCCTGCCTCTTCAATAGGACGACTTCTTTTTCTATCGATGTTATCGACATGTCCCGGCTTACCTTGTTCGACGACGACAGGATCGATCTCCGACGGACACCATACTAGGAACTGGAGCTTTCAGTTCATCGCGAAGAAGCGGTGGCGTCGTGGGTCGAGGTTGATTTTCGGGAGGAGTAGTGAGCGGAGTGGGACCCGAAGGTGCTGCTCGGTTAGGGCTTCGGTGGCATATGGGACATGTTCAGATTTTCTGGTGGCAGTGGGGACGGACTCGAGTGGGGAGCTGTTTGGGAATGAGGATGCGAATTGGGCGTCGAATGTGAGTAAGGCGAGGAATTCGAGGAAGGAGAGAGATGAAGGTGAAGGTAATGGAGAGAAGGAGAATGTGGTTGTTGGGTTTGGTCCCACTGGGGGTTTTGATGCTCAGGGGAATGAGTCCGAGTACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

16.9

Weight (kDa)

8.7

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02425
fragaria_vesca	FvH4_2g25690
malus_domestica	MD03G1287800.v1.1 MD11G1310500.v1.1
prunus_persica	Prupe.8G261000_v2.0.a1
pyrus_communis	pycom03g22790 pycom05g20860 pycom11g27120 pycom12g11430 pycom15g16820
rosa_chinensis	RchiOBHm_Chr6g0293961
rosa_laevigata	RLG00000011912
rosa_multiflora	Rmu_co8412691.1_g000001 Rmu_sc0005126.1_g000009 Rmu_sc0005647.1_g000005 Rmu_sc0036888.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173790
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6BG359600 Rh6CG366900 Rh6DG353300
rosa_wichuraiana	Rw6G030720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	211
AccII	CGCG	1 cut(s)	158
AciI	CCGC	2 cut(s)	166, 211
AclWI	GGATC	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	361
AcyI	GRCGYC	2 cut(s)	172, 338
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	437
AflIII	ACRYGT	2 cut(s)	74, 263
AgsI	TTSAA	1 cut(s)	39
AluBI	AGCT	2 cut(s)	144, 310
AluI	AGCT	2 cut(s)	144, 310
AlwI	GGATC	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	361
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	219, 428
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	219, 428
BbvI	GCAGC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BcnI	CCSGG	1 cut(s)	81
BfaI	CTAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	2 cut(s)	219, 428
BmeT110I	CYCGRG	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	219, 428
BmiI	GGNNCC	3 cut(s)	220, 221, 430
BmrFI	CCNGG	1 cut(s)	81
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	2 cut(s)	316, 436
BmuI	ACTGGG	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	450
BpuMI	CCSGG	1 cut(s)	81
Bsa29I	ATCGAT	2 cut(s)	62, 110
BsaHI	GRCGYC	2 cut(s)	172, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse1I	ACTGG	2 cut(s)	143, 439
BseCI	ATCGAT	2 cut(s)	62, 110
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	2 cut(s)	143, 439
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	2 cut(s)	62, 110
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	5 cut(s)	63, 232, 274, 304, 414
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmFI	GGGAC	5 cut(s)	63, 232, 274, 304, 414
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	107, 111
Bsp68I	TCGCGA	1 cut(s)	158
BspACI	CCGC	2 cut(s)	166, 211
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	463
BspDI	ATCGAT	2 cut(s)	62, 110
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	3 cut(s)	220, 221, 430
BspPI	GGATC	1 cut(s)	115
BsrBI	CCGCTC	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	143, 439
BssMI	GATC	2 cut(s)	107, 111
BssNI	GRCGYC	2 cut(s)	172, 338
Bst6I	CTCTTC	1 cut(s)	40
BstACI	GRCGYC	2 cut(s)	172, 338
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	1 cut(s)	331
BstFNI	CGCG	1 cut(s)	158
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	2 cut(s)	110, 114
BstMBI	GATC	2 cut(s)	107, 111
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 335
BstNSI	RCATGY	2 cut(s)	78, 267
BstSCI	CCNGG	1 cut(s)	79
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	218
Bsu15I	ATCGAT	2 cut(s)	62, 110
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	2 cut(s)	62, 110
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	291, 432
BtuMI	TCGCGA	1 cut(s)	158
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	219, 428
ClaI	ATCGAT	2 cut(s)	62, 110
CseI	GACGC	2 cut(s)	161, 327
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	2 cut(s)	75, 264
CviJI	RGCY	5 cut(s)	5, 84, 144, 245, 310
CviKI_1	RGCY	5 cut(s)	5, 84, 144, 245, 310
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	2 cut(s)	109, 113
DpnII	GATC	2 cut(s)	107, 111
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco47I	GGWCC	2 cut(s)	219, 428
Eco88I	CYCGRG	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	361
FaeI	CATG	2 cut(s)	78, 267
FaiI	YATR	5 cut(s)	76, 129, 256, 258, 265
FaqI	GGGAC	5 cut(s)	63, 232, 274, 304, 414
FatI	CATG	2 cut(s)	74, 263
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	232
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	232
GsuI	CTGGAG	1 cut(s)	160
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	2 cut(s)	161, 327
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	2 cut(s)	172, 338
Hin1II	CATG	2 cut(s)	78, 267
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	296, 461
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	3 cut(s)	118, 271, 466
Hpy188III	TCNNGA	2 cut(s)	157, 196
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	5 cut(s)	100, 103, 122, 177, 343
HpyAV	CCTTC	5 cut(s)	219, 364, 377, 383, 397
HpyCH4IV	ACGT	1 cut(s)	471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 335
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	471
Hsp92I	GRCGYC	2 cut(s)	172, 338
Hsp92II	CATG	2 cut(s)	78, 267
HspAI	GCGC	1 cut(s)	24
KflI	GGGWCCC	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	107, 111
LmnI	GCTCC	2 cut(s)	141, 307
LpnPI	CCDG	7 cut(s)	42, 90, 94, 124, 263, 420, 437
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	2 cut(s)	316, 436
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	471
MalI	GATC	2 cut(s)	109, 113
MbiI	CCGCTC	1 cut(s)	211
MboI	GATC	2 cut(s)	107, 111
MboII	GAAGA	2 cut(s)	27, 172
MluCI	AATT	2 cut(s)	331, 361
MlyI	GAGTC	2 cut(s)	290, 470
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	16, 19, 43, 177, 192, 316, 351, 360
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	81
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	251, 335
NciI	CCSGG	1 cut(s)	81
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	2 cut(s)	107, 111
NlaIII	CATG	2 cut(s)	78, 267
NlaIV	GGNNCC	3 cut(s)	220, 221, 430
NruI	TCGCGA	1 cut(s)	158
NspI	RCATGY	2 cut(s)	78, 267
PaeR7I	CTCGAG	1 cut(s)	298
PciI	ACATGT	2 cut(s)	74, 263
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 107
PkrI	GCNGC	1 cut(s)	233
PleI	GAGTC	2 cut(s)	290, 469
PpsI	GAGTC	2 cut(s)	290, 469
PpuMI	RGGWCCY	1 cut(s)	219
PscI	ACATGT	2 cut(s)	74, 263
Psp5II	RGGWCCY	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	220, 221, 430
PspPI	GGNCC	2 cut(s)	219, 428
PspPPI	RGGWCCY	1 cut(s)	219
PspXI	VCTCGAGB	1 cut(s)	298
RruI	TCGCGA	1 cut(s)	158
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	2 cut(s)	107, 111
Sau96I	GGNCC	2 cut(s)	219, 428
SchI	GAGTC	2 cut(s)	290, 470
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	8 cut(s)	91, 146, 188, 230, 312, 388, 394, 474
SfaNI	GCATC	2 cut(s)	316, 436
Sfr274I	CTCGAG	1 cut(s)	298
SinI	GGWCC	2 cut(s)	219, 428
SlaI	CTCGAG	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	2 cut(s)	331, 361
SsiI	CCGC	2 cut(s)	166, 211
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	79
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	8 cut(s)	62, 71, 95, 110, 182, 299, 341, 365
TasI	AATT	2 cut(s)	331, 361
TscAI	CASTG	2 cut(s)	291, 439
TseI	GCWGC	1 cut(s)	231
TspDTI	ATGAA	2 cut(s)	142, 396
TspGWI	ACGGA	2 cut(s)	135, 308
TspRI	CASTG	2 cut(s)	291, 439
VpaK11BI	GGWCC	2 cut(s)	219, 428
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	2 cut(s)	78, 267
XhoI	CTCGAG	1 cut(s)	298
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.