RLG00000011912

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009253
Physical Location & Seq
Reverse (-)
13689435 .. 13690907
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011912

Sequence Viewer

Length: 843 bp
ATGTCACGTTCCCACAAAGCCCTCGACTCACGGCACCCCTTAGATTCGTGTACATTTCAACTCCATAGCTGGAGACCTTTCCAGCTTCAACAGCAGACCACCGCACCCACCTCCAAAACCCTAGACTCCGATCCCACTAACCACAACCACAACACCAACCCCAAACCCTACTACACCAAGCGTCCATGCCTCTCCAACCGAGCGACGTCGTTTTCCATCGACGCCATCGACATGTCCAGGCTGACTTTGGTCGACGACGACCGGACGATCTCCGGAGGGCACCATAAGCACGGGAGCTTCCGATTCATTGCCAAGAAGAGGCGGCGGCGCGGGTCCAGGTCGGTCTCGGGTCGGAGCAGCGATCGGAGCGGGACCCGGAGGTGCTGCTCCGTCGGGGCTTCGGCTGCTTACGGGACGTGTTCGGATTTTCCGGTGGCGATTGGTACGGACTCGAGTGGGGAGCTGTTTGGGAATGGGGATGCGAATTGGGCCTCGGATGTGAGTGAGGCTAGGAATTCGAGGAAGGAGAGGGATGGAGTTGGGAGTGGAGAGAAGGAGATTCCGGGTGTCGGGTTTGGGCCGGGTGGGGGGTTTGATGCTCAGGGAAATGAGTCCGGATATGGTAGTGAACCGGGTTACCGTGGGGACGCGGAGTTCGGATATGGTGATGAACTTGATGAGGAGGAGGATGATGCTCGTCTATTGTTTTGGGGCAATCATTTCGGAGATAGTGATGCTATGATGGAGGTTGTGGGTGAGAATACTTTCACGGATCAAAAATCACATCACAGATGTCGCCGTAAGAAACATGATTGCAGAATGGTTGTTGATTCCCTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

30.91

Weight (kDa)

6.86

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 209
AccB1I GGYRCC 2 cut(s) 33, 279
AccBSI CCGCTC 1 cut(s) 369
AccI GTMKAC 1 cut(s) 252
AccII CGCG 2 cut(s) 330, 650
AccIII TCCGGA 2 cut(s) 272, 614
AciI CCGC 6 cut(s) 102, 322, 325, 330, 369, 650
AclWI GGATC 2 cut(s) 125, 780
AcsI RAATTY 1 cut(s) 514
AcyI GRCGYC 2 cut(s) 206, 222
AfaI GTAC 2 cut(s) 52, 445
AfiI CCNNNNNNNGG 3 cut(s) 318, 569, 587
AflIII ACRYGT 2 cut(s) 231, 416
AgsI TTSAA 2 cut(s) 59, 89
AjiI CACGTC 1 cut(s) 417
AjnI CCWGG 2 cut(s) 236, 335
AloI GAACNNNNNNTCC 2 cut(s) 638, 670
AluBI AGCT 4 cut(s) 69, 85, 297, 463
AluI AGCT 4 cut(s) 69, 85, 297, 463
Alw26I GTCTC 2 cut(s) 67, 349
AlwI GGATC 2 cut(s) 125, 780
Ama87I CYCGRG 2 cut(s) 346, 451
Aor13HI TCCGGA 2 cut(s) 272, 614
AoxI GGCC 2 cut(s) 489, 578
ApeKI GCWGC 3 cut(s) 357, 384, 404
ApoI RAATTY 1 cut(s) 514
ArsI GACNNNNNNTTYG 2 cut(s) 638, 670
Asp700I GAANNNNTTC 1 cut(s) 764
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 4 cut(s) 333, 372, 489, 578
AsuC2I CCSGG 4 cut(s) 376, 564, 582, 633
AsuHPI GGTGA 2 cut(s) 677, 767
AvaI CYCGRG 2 cut(s) 346, 451
AvaII GGWCC 2 cut(s) 333, 372
AxyI CCTNAGG 1 cut(s) 836
BaeGI GKGCMC 1 cut(s) 282
BanI GGYRCC 2 cut(s) 33, 279
BbvI GCAGC 3 cut(s) 369, 371, 391
BccI CCATC 4 cut(s) 224, 233, 527, 736
BceAI ACGGC 2 cut(s) 47, 783
BcgI CGANNNNNNTGC 2 cut(s) 703, 737
BciT130I CCWGG 2 cut(s) 238, 337
BcnI CCSGG 4 cut(s) 376, 564, 582, 633
BcoDI GTCTC 2 cut(s) 67, 349
BfaI CTAG 2 cut(s) 122, 510
BisI GCNGC 5 cut(s) 323, 326, 358, 385, 405
BlsI GCNGC 5 cut(s) 324, 327, 359, 386, 406
Bme1390I CCNGG 6 cut(s) 238, 337, 376, 564, 582, 633
Bme18I GGWCC 2 cut(s) 333, 372
BmeT110I CYCGRG 2 cut(s) 346, 451
BmgBI CACGTC 1 cut(s) 417
BmgT120I GGNCC 4 cut(s) 333, 372, 489, 578
BmiI GGNNCC 5 cut(s) 35, 281, 334, 373, 374
BmrFI CCNGG 6 cut(s) 238, 337, 376, 564, 582, 633
BmsI GCATC 4 cut(s) 469, 586, 682, 724
BoxI GACNNNNGTC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 600
BpuMI CCSGG 4 cut(s) 376, 564, 582, 633
BsaHI GRCGYC 2 cut(s) 206, 222
BsaI GGTCTC 2 cut(s) 67, 349
BsaJI CCNNGG 2 cut(s) 492, 640
BsaWI WCCGGW 4 cut(s) 261, 272, 430, 614
Bsc4I CCNNNNNNNGG 3 cut(s) 318, 569, 587
Bse21I CCTNAGG 1 cut(s) 836
Bse3DI GCAATG 1 cut(s) 306
BseAI TCCGGA 2 cut(s) 272, 614
BseBI CCWGG 2 cut(s) 238, 337
BseDI CCNNGG 2 cut(s) 492, 640
BseGI GGATG 4 cut(s) 484, 502, 538, 694
BseLI CCNNNNNNNGG 3 cut(s) 318, 569, 587
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 614, 827
BseRI GAGGAG 2 cut(s) 695, 698
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 3 cut(s) 369, 371, 391
Bsh1236I CGCG 2 cut(s) 330, 650
Bsh1285I CGRYCG 2 cut(s) 262, 364
BshFI GGCC 2 cut(s) 491, 580
BshNI GGYRCC 2 cut(s) 33, 279
BsiEI CGRYCG 2 cut(s) 262, 364
BsiHKCI CYCGRG 2 cut(s) 346, 451
BsiSI CCGG 8 cut(s) 262, 273, 376, 431, 563, 581, 615, 632
BslFI GGGAC 3 cut(s) 385, 427, 659
BslI CCNNNNNNNGG 3 cut(s) 318, 569, 587
BsmAI GTCTC 2 cut(s) 67, 349
BsmFI GGGAC 3 cut(s) 385, 427, 659
BsnI GGCC 2 cut(s) 491, 580
Bso31I GGTCTC 2 cut(s) 67, 349
BsoBI CYCGRG 2 cut(s) 346, 451
Bsp1286I GDGCHC 1 cut(s) 282
Bsp13I TCCGGA 2 cut(s) 272, 614
Bsp1407I TGTACA 1 cut(s) 50
Bsp143I GATC 4 cut(s) 130, 267, 361, 772
BspACI CCGC 6 cut(s) 102, 322, 325, 330, 369, 650
BspANI GGCC 2 cut(s) 491, 580
BspCNI CTCAG 2 cut(s) 613, 828
BspEI TCCGGA 2 cut(s) 272, 614
BspFNI CGCG 2 cut(s) 330, 650
BspLI GGNNCC 5 cut(s) 35, 281, 334, 373, 374
BspPI GGATC 2 cut(s) 125, 780
BspT107I GGYRCC 2 cut(s) 33, 279
BspTNI GGTCTC 2 cut(s) 67, 349
BsrBI CCGCTC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 306
BsrGI TGTACA 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 492, 640
BssMI GATC 4 cut(s) 130, 267, 361, 772
BssNI GRCGYC 2 cut(s) 206, 222
Bst2UI CCWGG 2 cut(s) 238, 337
Bst4CI ACNGT 1 cut(s) 641
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 2 cut(s) 206, 222
BstAUI TGTACA 1 cut(s) 50
BstDEI CTNAG 3 cut(s) 40, 600, 836
BstDSI CCRYGG 1 cut(s) 640
BstEII GGTNACC 1 cut(s) 635
BstF5I GGATG 4 cut(s) 484, 502, 538, 694
BstFNI CGCG 2 cut(s) 330, 650
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 4 cut(s) 133, 270, 364, 775
BstMAI GTCTC 2 cut(s) 67, 349
BstMBI GATC 4 cut(s) 130, 267, 361, 772
BstMCI CGRYCG 2 cut(s) 262, 364
BstMWI GCNNNNNNNGC 5 cut(s) 91, 286, 366, 404, 488
BstNI CCWGG 2 cut(s) 238, 337
BstNSI RCATGY 1 cut(s) 235
BstPAI GACNNNNGTC 1 cut(s) 248
BstPI GGTNACC 1 cut(s) 635
BstSCI CCNGG 6 cut(s) 236, 335, 374, 562, 580, 631
BstSLI GKGCMC 1 cut(s) 282
BstUI CGCG 2 cut(s) 330, 650
BstV1I GCAGC 3 cut(s) 369, 371, 391
Bsu36I CCTNAGG 1 cut(s) 836
BsuRI GGCC 2 cut(s) 491, 580
BtgI CCRYGG 1 cut(s) 640
BtrI CACGTC 1 cut(s) 417
BtsCI GGATG 4 cut(s) 484, 502, 538, 694
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 4 cut(s) 333, 372, 489, 578
CseI GACGC 3 cut(s) 170, 230, 656
Csp6I GTAC 2 cut(s) 51, 444
CviAII CATG 3 cut(s) 186, 232, 809
CviQI GTAC 2 cut(s) 51, 444
DdeI CTNAG 3 cut(s) 40, 600, 836
DpnI GATC 4 cut(s) 132, 269, 363, 774
DpnII GATC 4 cut(s) 130, 267, 361, 772
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco31I GGTCTC 2 cut(s) 67, 349
Eco47I GGWCC 2 cut(s) 333, 372
Eco81I CCTNAGG 1 cut(s) 836
Eco88I CYCGRG 2 cut(s) 346, 451
Eco91I GGTNACC 1 cut(s) 635
EcoO109I RGGNCCY 1 cut(s) 372
EcoO65I GGTNACC 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 236, 335
FaeI CATG 3 cut(s) 189, 235, 812
FaiI YATR 8 cut(s) 66, 187, 233, 285, 621, 663, 740, 810
FaqI GGGAC 3 cut(s) 385, 427, 659
FatI CATG 3 cut(s) 185, 231, 808
FauI CCCGC 2 cut(s) 323, 362
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 5 cut(s) 323, 326, 358, 385, 405
FokI GGATG 4 cut(s) 491, 509, 545, 701
Fsp4HI GCNGC 5 cut(s) 323, 326, 358, 385, 405
FspBI CTAG 2 cut(s) 122, 510
GlaI GCGC 1 cut(s) 329
GluI GCNGC 5 cut(s) 323, 326, 358, 385, 405
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 2 cut(s) 491, 580
HapII CCGG 8 cut(s) 262, 273, 376, 431, 563, 581, 615, 632
HgaI GACGC 3 cut(s) 170, 230, 656
HhaI GCGC 1 cut(s) 330
Hin1I GRCGYC 2 cut(s) 206, 222
Hin1II CATG 3 cut(s) 189, 235, 812
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 8 cut(s) 26, 44, 125, 303, 449, 559, 611, 830
HpaII CCGG 8 cut(s) 262, 273, 376, 431, 563, 581, 615, 632
HphI GGTGA 2 cut(s) 677, 767
Hpy166II GTNNAC 3 cut(s) 51, 253, 629
Hpy188I TCNGA 8 cut(s) 130, 302, 354, 366, 424, 496, 659, 725
Hpy188III TCNNGA 2 cut(s) 273, 615
Hpy8I GTNNAC 3 cut(s) 51, 253, 629
Hpy99I CGWCG 6 cut(s) 208, 211, 224, 257, 260, 395
HpyAV CCTTC 2 cut(s) 517, 547
HpyCH4III ACNGT 1 cut(s) 641
HpyCH4IV ACGT 3 cut(s) 7, 206, 416
HpyCH4V TGCA 1 cut(s) 816
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 286, 366, 404, 488
HpyF3I CTNAG 3 cut(s) 40, 600, 836
HpySE526I ACGT 3 cut(s) 7, 206, 416
Hsp92I GRCGYC 2 cut(s) 206, 222
Hsp92II CATG 3 cut(s) 189, 235, 812
HspAI GCGC 1 cut(s) 328
KflI GGGWCCC 1 cut(s) 372
Kpn2I TCCGGA 2 cut(s) 272, 614
Kzo9I GATC 4 cut(s) 130, 267, 361, 772
LmnI GCTCC 5 cut(s) 294, 354, 366, 392, 460
Lsp1109I GCAGC 3 cut(s) 369, 371, 391
LweI GCATC 4 cut(s) 469, 586, 682, 724
MaeI CTAG 2 cut(s) 122, 510
MaeII ACGT 3 cut(s) 7, 206, 416
MaeIII GTNAC 2 cut(s) 3, 635
MalI GATC 4 cut(s) 132, 269, 363, 774
MbiI CCGCTC 1 cut(s) 369
MboI GATC 4 cut(s) 130, 267, 361, 772
MboII GAAGA 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 2 cut(s) 484, 514
MlyI GAGTC 4 cut(s) 20, 119, 443, 620
MmeI TCCRAC 2 cut(s) 219, 332
MroI TCCGGA 2 cut(s) 272, 614
MroXI GAANNNNTTC 1 cut(s) 764
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 8 cut(s) 262, 273, 376, 431, 563, 581, 615, 632
MspR9I CCNGG 6 cut(s) 238, 337, 376, 564, 582, 633
MvaI CCWGG 2 cut(s) 238, 337
MvnI CGCG 2 cut(s) 330, 650
MwoI GCNNNNNNNGC 5 cut(s) 91, 286, 366, 404, 488
NciI CCSGG 4 cut(s) 376, 564, 582, 633
NdeII GATC 4 cut(s) 130, 267, 361, 772
NlaIII CATG 3 cut(s) 189, 235, 812
NlaIV GGNNCC 5 cut(s) 35, 281, 334, 373, 374
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 451
PciI ACATGT 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 764
PfeI GAWTC 4 cut(s) 44, 303, 559, 830
PkrI GCNGC 5 cut(s) 324, 327, 359, 386, 406
Ple19I CGATCG 1 cut(s) 364
PleI GAGTC 4 cut(s) 20, 119, 443, 619
PpsI GAGTC 4 cut(s) 20, 119, 443, 619
PpuMI RGGWCCY 1 cut(s) 372
PscI ACATGT 1 cut(s) 231
PshAI GACNNNNGTC 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 236, 335
PspEI GGTNACC 1 cut(s) 635
PspGI CCWGG 2 cut(s) 236, 335
PspN4I GGNNCC 5 cut(s) 35, 281, 334, 373, 374
PspPI GGNCC 4 cut(s) 333, 372, 489, 578
PspPPI RGGWCCY 1 cut(s) 372
PspXI VCTCGAGB 1 cut(s) 451
PvuI CGATCG 1 cut(s) 364
RsaI GTAC 2 cut(s) 52, 445
RsaNI GTAC 2 cut(s) 51, 444
RseI CAYNNNNRTG 1 cut(s) 230
SalI GTCGAC 1 cut(s) 251
SatI GCNGC 5 cut(s) 323, 326, 358, 385, 405
Sau3AI GATC 4 cut(s) 130, 267, 361, 772
Sau96I GGNCC 4 cut(s) 333, 372, 489, 578
SchI GAGTC 4 cut(s) 20, 119, 443, 620
ScrFI CCNGG 6 cut(s) 238, 337, 376, 564, 582, 633
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 4 cut(s) 469, 586, 682, 724
Sfr274I CTCGAG 1 cut(s) 451
SinI GGWCC 2 cut(s) 333, 372
SlaI CTCGAG 1 cut(s) 451
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
Sse9I AATT 2 cut(s) 484, 514
SsiI CCGC 6 cut(s) 102, 322, 325, 330, 369, 650
SspMI CTAG 2 cut(s) 122, 510
StyD4I CCNGG 6 cut(s) 236, 335, 374, 562, 580, 631
TaaI ACNGT 1 cut(s) 641
TaiI ACGT 3 cut(s) 10, 209, 419
TaqI TCGA 6 cut(s) 24, 219, 228, 252, 452, 518
TaqII GACCGA 1 cut(s) 331
TasI AATT 2 cut(s) 484, 514
TatI WGTACW 1 cut(s) 50
TauI GCSGC 2 cut(s) 325, 328
TfiI GAWTC 4 cut(s) 44, 303, 559, 830
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 3 cut(s) 357, 384, 404
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 295, 684
TspGWI ACGGA 3 cut(s) 379, 461, 785
VpaK11BI GGWCC 2 cut(s) 333, 372
XapI RAATTY 1 cut(s) 514
XceI RCATGY 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 451
XmiI GTMKAC 1 cut(s) 252
XmnI GAANNNNTTC 1 cut(s) 764
XspI CTAG 2 cut(s) 122, 510
ZraI GACGTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.