Rmu_co8412691.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8412691.1
OG0009253
Physical Location & Seq
Forward (+)
1 .. 531
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8412691.1_g000001.1.cds

Sequence Viewer

Length: 531 bp
cggacgatctccggagggcaccataagcacgggagcttccgattcattgccaagaagaggcggcggcgcgggtccaggtcggtctcgggtcggagcagcgatcggagcgggacccggaggtgctgctccgtcggggcttcggctgcttacgggacgtgttcggattttccggtggcgattggtacggactctagtggggagctgtttgggaatggggatgcgaattgggcctcggatgtgagtgaggctaggaattcgaggaaggagagggatggagttgggagtggagagaaggagaatccgggtgtcgggtttgggccgagtggggggtttgatgctcagggaaatgagtccggatatggtagtgaaccgggttaccgtggggacgcagagttcggatatggtgatgaacttgatgaggaggaggaggatgctcgtctattgttttggggcaatcatttcggaggtacattttgtccttgttgcatttcgagtggtgttgctatcattgtcaactataatgtaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

18.62

Weight (kDa)

5.84

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 18
AccBSI CCGCTC 1 cut(s) 108
AccII CGCG 1 cut(s) 69
AccIII TCCGGA 2 cut(s) 11, 353
AciI CCGC 4 cut(s) 61, 64, 69, 108
AcsI RAATTY 1 cut(s) 253
AfaI GTAC 2 cut(s) 184, 469
AfiI CCNNNNNNNGG 3 cut(s) 57, 308, 326
AflIII ACRYGT 1 cut(s) 155
AjiI CACGTC 1 cut(s) 156
AjnI CCWGG 1 cut(s) 74
AloI GAACNNNNNNTCC 2 cut(s) 377, 409
AluBI AGCT 2 cut(s) 36, 202
AluI AGCT 2 cut(s) 36, 202
Alw26I GTCTC 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 85
Aor13HI TCCGGA 2 cut(s) 11, 353
AoxI GGCC 2 cut(s) 228, 317
ApeKI GCWGC 3 cut(s) 96, 123, 143
ApoI RAATTY 1 cut(s) 253
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 4 cut(s) 72, 111, 228, 317
AsuC2I CCSGG 3 cut(s) 115, 303, 372
AsuHPI GGTGA 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 2 cut(s) 72, 111
BaeGI GKGCMC 1 cut(s) 21
BanI GGYRCC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 108, 110, 130
BccI CCATC 1 cut(s) 266
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BciT130I CCWGG 1 cut(s) 76
BcnI CCSGG 3 cut(s) 115, 303, 372
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 2 cut(s) 192, 249
BisI GCNGC 5 cut(s) 62, 65, 97, 124, 144
BlsI GCNGC 5 cut(s) 63, 66, 98, 125, 145
Bme1390I CCNGG 4 cut(s) 76, 115, 303, 372
Bme18I GGWCC 2 cut(s) 72, 111
BmeT110I CYCGRG 1 cut(s) 85
BmgBI CACGTC 1 cut(s) 156
BmgT120I GGNCC 4 cut(s) 72, 111, 228, 317
BmiI GGNNCC 4 cut(s) 20, 73, 112, 113
BmrFI CCNGG 4 cut(s) 76, 115, 303, 372
BmsI GCATC 3 cut(s) 208, 325, 421
Bpu10I CCTNAGC 1 cut(s) 339
BpuMI CCSGG 3 cut(s) 115, 303, 372
BsaI GGTCTC 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 231, 379
BsaWI WCCGGW 3 cut(s) 11, 169, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 308, 326
Bse3DI GCAATG 1 cut(s) 45
BseAI TCCGGA 2 cut(s) 11, 353
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 231, 379
BseGI GGATG 4 cut(s) 223, 241, 277, 436
BseLI CCNNNNNNNGG 3 cut(s) 57, 308, 326
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 353
BseRI GAGGAG 3 cut(s) 434, 437, 440
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 3 cut(s) 108, 110, 130
Bsh1236I CGCG 1 cut(s) 69
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 2 cut(s) 230, 319
BshNI GGYRCC 1 cut(s) 18
BsiEI CGRYCG 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 6 cut(s) 12, 115, 170, 302, 354, 371
BslFI GGGAC 3 cut(s) 124, 166, 398
BslI CCNNNNNNNGG 3 cut(s) 57, 308, 326
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 3 cut(s) 124, 166, 398
BsnI GGCC 2 cut(s) 230, 319
Bso31I GGTCTC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 21
Bsp13I TCCGGA 2 cut(s) 11, 353
Bsp143I GATC 2 cut(s) 6, 100
BspACI CCGC 4 cut(s) 61, 64, 69, 108
BspANI GGCC 2 cut(s) 230, 319
BspCNI CTCAG 1 cut(s) 352
BspEI TCCGGA 2 cut(s) 11, 353
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 4 cut(s) 20, 73, 112, 113
BspT107I GGYRCC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 88
BsrBI CCGCTC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 231, 379
BssMI GATC 2 cut(s) 6, 100
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 339
BstDSI CCRYGG 1 cut(s) 379
BstEII GGTNACC 1 cut(s) 374
BstF5I GGATG 4 cut(s) 223, 241, 277, 436
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 2 cut(s) 9, 103
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 2 cut(s) 6, 100
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 4 cut(s) 25, 105, 143, 227
BstNI CCWGG 1 cut(s) 76
BstPI GGTNACC 1 cut(s) 374
BstSCI CCNGG 4 cut(s) 74, 113, 301, 370
BstSLI GKGCMC 1 cut(s) 21
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 3 cut(s) 108, 110, 130
BsuRI GGCC 2 cut(s) 230, 319
BtgI CCRYGG 1 cut(s) 379
BtrI CACGTC 1 cut(s) 156
BtsCI GGATG 4 cut(s) 223, 241, 277, 436
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 4 cut(s) 72, 111, 228, 317
CseI GACGC 1 cut(s) 395
Csp6I GTAC 2 cut(s) 183, 468
CviJI RGCY 7 cut(s) 36, 137, 143, 202, 230, 248, 319
CviKI_1 RGCY 7 cut(s) 36, 137, 143, 202, 230, 248, 319
CviQI GTAC 2 cut(s) 183, 468
DdeI CTNAG 1 cut(s) 339
DpnI GATC 2 cut(s) 8, 102
DpnII GATC 2 cut(s) 6, 100
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 72, 111
Eco88I CYCGRG 1 cut(s) 85
Eco91I GGTNACC 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 111
EcoO65I GGTNACC 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 74
FaiI YATR 4 cut(s) 24, 360, 402, 519
FaqI GGGAC 3 cut(s) 124, 166, 398
FauI CCCGC 2 cut(s) 62, 101
Fnu4HI GCNGC 5 cut(s) 62, 65, 97, 124, 144
FokI GGATG 4 cut(s) 230, 248, 284, 443
Fsp4HI GCNGC 5 cut(s) 62, 65, 97, 124, 144
FspBI CTAG 2 cut(s) 192, 249
GlaI GCGC 1 cut(s) 68
GluI GCNGC 5 cut(s) 62, 65, 97, 124, 144
HaeIII GGCC 2 cut(s) 230, 319
HapII CCGG 6 cut(s) 12, 115, 170, 302, 354, 371
HgaI GACGC 1 cut(s) 395
HhaI GCGC 1 cut(s) 69
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 4 cut(s) 42, 188, 298, 350
HpaII CCGG 6 cut(s) 12, 115, 170, 302, 354, 371
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 368, 514
Hpy188I TCNGA 7 cut(s) 41, 93, 105, 163, 235, 398, 464
Hpy188III TCNNGA 2 cut(s) 12, 354
Hpy8I GTNNAC 2 cut(s) 368, 514
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 256, 286
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 486
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 105, 143, 227
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 155
HspAI GCGC 1 cut(s) 67
KflI GGGWCCC 1 cut(s) 111
Kpn2I TCCGGA 2 cut(s) 11, 353
Kzo9I GATC 2 cut(s) 6, 100
LmnI GCTCC 5 cut(s) 33, 93, 105, 131, 199
LpnPI CCDG 9 cut(s) 25, 61, 88, 128, 183, 315, 326, 367, 384
Lsp1109I GCAGC 3 cut(s) 108, 110, 130
LweI GCATC 3 cut(s) 208, 325, 421
MaeI CTAG 2 cut(s) 192, 249
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 374, 523
MalI GATC 2 cut(s) 8, 102
MbiI CCGCTC 1 cut(s) 108
MboI GATC 2 cut(s) 6, 100
MboII GAAGA 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 2 cut(s) 223, 253
MlyI GAGTC 2 cut(s) 182, 359
MmeI TCCRAC 1 cut(s) 71
MroI TCCGGA 2 cut(s) 11, 353
MspI CCGG 6 cut(s) 12, 115, 170, 302, 354, 371
MspR9I CCNGG 4 cut(s) 76, 115, 303, 372
MvaI CCWGG 1 cut(s) 76
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 4 cut(s) 25, 105, 143, 227
NciI CCSGG 3 cut(s) 115, 303, 372
NdeII GATC 2 cut(s) 6, 100
NlaIV GGNNCC 4 cut(s) 20, 73, 112, 113
NmeAIII GCCGAG 1 cut(s) 345
PfeI GAWTC 2 cut(s) 42, 298
PkrI GCNGC 5 cut(s) 63, 66, 98, 125, 145
Ple19I CGATCG 1 cut(s) 103
PleI GAGTC 2 cut(s) 182, 358
PpsI GAGTC 2 cut(s) 182, 358
PpuMI RGGWCCY 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 74
PspEI GGTNACC 1 cut(s) 374
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 4 cut(s) 20, 73, 112, 113
PspPI GGNCC 4 cut(s) 72, 111, 228, 317
PspPPI RGGWCCY 1 cut(s) 111
PvuI CGATCG 1 cut(s) 103
RsaI GTAC 2 cut(s) 184, 469
RsaNI GTAC 2 cut(s) 183, 468
SatI GCNGC 5 cut(s) 62, 65, 97, 124, 144
Sau3AI GATC 2 cut(s) 6, 100
Sau96I GGNCC 4 cut(s) 72, 111, 228, 317
SchI GAGTC 2 cut(s) 182, 359
ScrFI CCNGG 4 cut(s) 76, 115, 303, 372
SduI GDGCHC 1 cut(s) 21
SetI ASST 6 cut(s) 38, 80, 122, 158, 204, 469
SfaNI GCATC 3 cut(s) 208, 325, 421
SinI GGWCC 2 cut(s) 72, 111
Sse9I AATT 2 cut(s) 223, 253
SsiI CCGC 4 cut(s) 61, 64, 69, 108
SspMI CTAG 2 cut(s) 192, 249
StyD4I CCNGG 4 cut(s) 74, 113, 301, 370
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 257, 491
TaqII GACCGA 1 cut(s) 70
TasI AATT 2 cut(s) 223, 253
TauI GCSGC 2 cut(s) 64, 67
TfiI GAWTC 2 cut(s) 42, 298
TseI GCWGC 3 cut(s) 96, 123, 143
TspDTI ATGAA 2 cut(s) 34, 423
TspGWI ACGGA 2 cut(s) 118, 200
VpaK11BI GGWCC 2 cut(s) 72, 111
XapI RAATTY 1 cut(s) 253
XspI CTAG 2 cut(s) 192, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.