Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009253

Physical Location & Seq

Genomic Coordinates Reverse (-)

13701539 .. 13701940

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g11430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCTGGGGTTGTCGCACAAATCCCTGGATTCACGGCACTCCGTCGATTCCTGCGCGTTCCAGCTCTATGGCTGGAGACCTTTCCAGCTGCAGCAGCAGACCTTCACGCCCACCTCCAAAACCCTAGACTCTGCCGATCGCAAATCCAATGGCCTCCAACGACTTCTTTTTCTATCGATGACGATCTCTGGCGGACACCATATTAGGAATGGGAGCTTCCAGTTCATCGCGAGGAAGCGGCGGCGTCGTGGGTCGAGGTCGGTTTCCGGGAGGAGTAGTGAGCGGAGTGGGACCCAGAGGTGCTGCTCGGTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.93

Weight (kDa)

11.71

Isoelectric Point (pI)

74.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02425
fragaria_vesca	FvH4_2g25690
malus_domestica	MD03G1287800.v1.1 MD11G1310500.v1.1
prunus_persica	Prupe.8G261000_v2.0.a1
pyrus_communis	pycom03g22790 pycom05g20860 pycom11g27120 pycom12g11430 pycom15g16820
rosa_chinensis	RchiOBHm_Chr6g0293961
rosa_laevigata	RLG00000011912
rosa_multiflora	Rmu_co8412691.1_g000001 Rmu_sc0005126.1_g000009 Rmu_sc0005647.1_g000005 Rmu_sc0036888.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173790
rosa_rugosa	Rorug06G0239500
rosa_samantha	Rh6BG359600 Rh6CG366900 Rh6DG353300
rosa_wichuraiana	Rw6G030720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	283
AccII	CGCG	2 cut(s)	56, 230
AciI	CCGC	4 cut(s)	192, 238, 241, 283
AcyI	GRCGYC	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	3 cut(s)	64, 88, 216
AluI	AGCT	3 cut(s)	64, 88, 216
Alw26I	GTCTC	1 cut(s)	70
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	4 cut(s)	88, 91, 94, 303
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	291
AsuC2I	CCSGG	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	291
BbvI	GCAGC	4 cut(s)	75, 103, 106, 290
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	1 cut(s)	89
BisI	GCNGC	6 cut(s)	89, 92, 95, 239, 242, 304
BlsI	GCNGC	6 cut(s)	90, 93, 96, 240, 243, 305
Bme1390I	CCNGG	2 cut(s)	26, 268
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	2 cut(s)	292, 293
BmrFI	CCNGG	2 cut(s)	26, 268
BpmI	CTGGAG	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	268
Bsa29I	ATCGAT	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bse1I	ACTGG	1 cut(s)	220
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	24
BseJI	GATNNNNATC	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	4 cut(s)	75, 103, 106, 290
BseYI	CCCAGC	1 cut(s)	4
Bsh1236I	CGCG	2 cut(s)	56, 230
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	136, 183
Bsp68I	TCGCGA	1 cut(s)	230
BspACI	CCGC	4 cut(s)	192, 238, 241, 283
BspANI	GGCC	1 cut(s)	153
BspDI	ATCGAT	1 cut(s)	176
BspFNI	CGCG	2 cut(s)	56, 230
BspLI	GGNNCC	2 cut(s)	292, 293
BspMAI	CTGCAG	1 cut(s)	93
BspTNI	GGTCTC	1 cut(s)	70
BsrBI	CCGCTC	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	136, 183
BssNI	GRCGYC	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	244
BstFNI	CGCG	2 cut(s)	56, 230
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	139, 186
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	136, 183
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	24, 266
BstSFI	CTRYAG	1 cut(s)	89
BstUI	CGCG	2 cut(s)	56, 230
BstV1I	GCAGC	4 cut(s)	75, 103, 106, 290
BstXI	CCANNNNNNTGG	1 cut(s)	68
Bsu15I	ATCGAT	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	176
BtgZI	GCGATG	1 cut(s)	211
BtuMI	TCGCGA	1 cut(s)	230
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	291
ClaI	ATCGAT	1 cut(s)	176
CseI	GACGC	1 cut(s)	233
CviJI	RGCY	5 cut(s)	64, 72, 88, 153, 216
CviKI_1	RGCY	5 cut(s)	64, 72, 88, 153, 216
DpnI	GATC	2 cut(s)	138, 185
DpnII	GATC	2 cut(s)	136, 183
EciI	GGCGGA	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	24
FaiI	YATR	2 cut(s)	69, 201
FaqI	GGGAC	1 cut(s)	304
Fnu4HI	GCNGC	6 cut(s)	89, 92, 95, 239, 242, 304
Fsp4HI	GCNGC	6 cut(s)	89, 92, 95, 239, 242, 304
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	6 cut(s)	89, 92, 95, 239, 242, 304
GsaI	CCCAGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	1 cut(s)	267
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	3 cut(s)	29, 47, 128
HpaII	CCGG	1 cut(s)	267
Hpy188III	TCNNGA	1 cut(s)	229
Hpy99I	CGWCG	2 cut(s)	47, 249
HpyAV	CCTTC	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
Hsp92I	GRCGYC	1 cut(s)	244
HspAI	GCGC	1 cut(s)	54
KflI	GGGWCCC	1 cut(s)	291
Kzo9I	GATC	2 cut(s)	136, 183
LmnI	GCTCC	1 cut(s)	213
Lsp1109I	GCAGC	4 cut(s)	75, 103, 106, 290
MaeI	CTAG	1 cut(s)	125
MalI	GATC	2 cut(s)	138, 185
MbiI	CCGCTC	1 cut(s)	283
MboI	GATC	2 cut(s)	136, 183
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	6 cut(s)	124, 164, 225, 249, 264, 291
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	2 cut(s)	26, 268
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	2 cut(s)	56, 230
MwoI	GCNNNNNNNGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	268
NdeII	GATC	2 cut(s)	136, 183
NlaIV	GGNNCC	2 cut(s)	292, 293
NruI	TCGCGA	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	29, 47
PfoI	TCCNGGA	1 cut(s)	266
PkrI	GCNGC	6 cut(s)	90, 93, 96, 240, 243, 305
Ple19I	CGATCG	1 cut(s)	139
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PpuMI	RGGWCCY	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	292, 293
PspPI	GGNCC	1 cut(s)	291
PspPPI	RGGWCCY	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	93
PvuI	CGATCG	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	88
RruI	TCGCGA	1 cut(s)	230
SatI	GCNGC	6 cut(s)	89, 92, 95, 239, 242, 304
Sau3AI	GATC	2 cut(s)	136, 183
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	26, 268
SetI	ASST	9 cut(s)	66, 82, 90, 104, 116, 218, 260, 302, 317
SfcI	CTRYAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	291
SsiI	CCGC	4 cut(s)	192, 238, 241, 283
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	24, 266
TaqI	TCGA	3 cut(s)	45, 176, 254
TauI	GCSGC	2 cut(s)	241, 244
TfiI	GAWTC	2 cut(s)	29, 47
TseI	GCWGC	4 cut(s)	88, 91, 94, 303
TspDTI	ATGAA	1 cut(s)	214
TspGWI	ACGGA	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.