Rmu_sc0005126.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005126.1
OG0009253
Physical Location & Seq
Reverse (-)
52570 .. 53343
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005126.1_g000009.1.cds

Sequence Viewer

Length: 774 bp
atgtcacgttcccacaaagccctcgactcacggcaccccttagattcgtgtacatttcaactccatagctggagacctttccagcttcaacagcagaccaccgcacccacctccaaaaccctagactccgatcccaccaaccccaaaccctactgcaccaagcgtccatgcctctccaaccgagcgacgtcgttttccatcgacgccatcgacatgtccaggctgactttggtcgacgacgagcggacgatctccggagggcaccataagcacgggagcttccgattcattgccaagaagaggcggcggcgcgggtccaggtcggtctcgggtcggagcagcgatcggagcgggacccggaggtgctgctccgtcggggcttcggctgcttacgggacgtgttcggattttccggtggcgattggtacggactctagtggggagctgtttgggaatggggatgcgaattgggcctcggatgtgagtgaggctaggaattcgaggaaggagagggatggagttgggagtggagagaaggagaatccgggtgtcgggtttgggccgagtggggggtttgatgctcagggaaatgagtccggatatggtagtgaaccgggttaccgtggggacgcagagttcggatatggtgatgaacttgatgaggaggaggaggatgctcgtctattgttttggggcaatcatttcggaggtacattttgtccttgttgcatttcgagtggtgttgctatcattgtcaactataatgtaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

27.83

Weight (kDa)

6.39

Isoelectric Point (pI)

53.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 191
AccB1I GGYRCC 2 cut(s) 33, 261
AccBSI CCGCTC 2 cut(s) 244, 351
AccI GTMKAC 1 cut(s) 234
AccII CGCG 1 cut(s) 312
AccIII TCCGGA 2 cut(s) 254, 596
AciI CCGC 6 cut(s) 102, 244, 304, 307, 312, 351
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 496
AcyI GRCGYC 2 cut(s) 188, 204
AfaI GTAC 3 cut(s) 52, 427, 712
AfiI CCNNNNNNNGG 3 cut(s) 300, 551, 569
AflIII ACRYGT 2 cut(s) 213, 398
AgsI TTSAA 2 cut(s) 59, 89
AjiI CACGTC 1 cut(s) 399
AjnI CCWGG 2 cut(s) 218, 317
AloI GAACNNNNNNTCC 2 cut(s) 620, 652
AluBI AGCT 4 cut(s) 69, 85, 279, 445
AluI AGCT 4 cut(s) 69, 85, 279, 445
Alw26I GTCTC 2 cut(s) 67, 331
AlwI GGATC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 328
Aor13HI TCCGGA 2 cut(s) 254, 596
AoxI GGCC 2 cut(s) 471, 560
ApeKI GCWGC 3 cut(s) 339, 366, 386
ApoI RAATTY 1 cut(s) 496
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 4 cut(s) 315, 354, 471, 560
AsuC2I CCSGG 3 cut(s) 358, 546, 615
AsuHPI GGTGA 1 cut(s) 659
AvaI CYCGRG 1 cut(s) 328
AvaII GGWCC 2 cut(s) 315, 354
BaeGI GKGCMC 1 cut(s) 264
BanI GGYRCC 2 cut(s) 33, 261
BbvI GCAGC 3 cut(s) 351, 353, 373
BccI CCATC 3 cut(s) 206, 215, 509
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 685, 719
BciT130I CCWGG 2 cut(s) 220, 319
BcnI CCSGG 3 cut(s) 358, 546, 615
BcoDI GTCTC 2 cut(s) 67, 331
BfaI CTAG 3 cut(s) 122, 435, 492
BisI GCNGC 5 cut(s) 305, 308, 340, 367, 387
BlsI GCNGC 5 cut(s) 306, 309, 341, 368, 388
Bme1390I CCNGG 5 cut(s) 220, 319, 358, 546, 615
Bme18I GGWCC 2 cut(s) 315, 354
BmeT110I CYCGRG 1 cut(s) 328
BmgBI CACGTC 1 cut(s) 399
BmgT120I GGNCC 4 cut(s) 315, 354, 471, 560
BmiI GGNNCC 5 cut(s) 35, 263, 316, 355, 356
BmrFI CCNGG 5 cut(s) 220, 319, 358, 546, 615
BmsI GCATC 3 cut(s) 451, 568, 664
BoxI GACNNNNGTC 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 582
BpuMI CCSGG 3 cut(s) 358, 546, 615
BsaHI GRCGYC 2 cut(s) 188, 204
BsaI GGTCTC 2 cut(s) 67, 331
BsaJI CCNNGG 2 cut(s) 474, 622
BsaWI WCCGGW 3 cut(s) 254, 412, 596
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 551, 569
Bse3DI GCAATG 1 cut(s) 288
BseAI TCCGGA 2 cut(s) 254, 596
BseBI CCWGG 2 cut(s) 220, 319
BseDI CCNNGG 2 cut(s) 474, 622
BseGI GGATG 4 cut(s) 466, 484, 520, 679
BseLI CCNNNNNNNGG 3 cut(s) 300, 551, 569
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 596
BseRI GAGGAG 3 cut(s) 677, 680, 683
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 3 cut(s) 351, 353, 373
BsgI GTGCAG 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 312
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 2 cut(s) 473, 562
BshNI GGYRCC 2 cut(s) 33, 261
BsiEI CGRYCG 1 cut(s) 346
BsiHKCI CYCGRG 1 cut(s) 328
BsiSI CCGG 6 cut(s) 255, 358, 413, 545, 597, 614
BslFI GGGAC 3 cut(s) 367, 409, 641
BslI CCNNNNNNNGG 3 cut(s) 300, 551, 569
BsmAI GTCTC 2 cut(s) 67, 331
BsmFI GGGAC 3 cut(s) 367, 409, 641
BsnI GGCC 2 cut(s) 473, 562
Bso31I GGTCTC 2 cut(s) 67, 331
BsoBI CYCGRG 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 264
Bsp13I TCCGGA 2 cut(s) 254, 596
Bsp1407I TGTACA 1 cut(s) 50
Bsp143I GATC 3 cut(s) 130, 249, 343
BspACI CCGC 6 cut(s) 102, 244, 304, 307, 312, 351
BspANI GGCC 2 cut(s) 473, 562
BspCNI CTCAG 1 cut(s) 595
BspEI TCCGGA 2 cut(s) 254, 596
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 5 cut(s) 35, 263, 316, 355, 356
BspPI GGATC 1 cut(s) 125
BspT107I GGYRCC 2 cut(s) 33, 261
BspTNI GGTCTC 2 cut(s) 67, 331
BsrBI CCGCTC 2 cut(s) 244, 351
BsrDI GCAATG 1 cut(s) 288
BsrGI TGTACA 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 474, 622
BssMI GATC 3 cut(s) 130, 249, 343
BssNI GRCGYC 2 cut(s) 188, 204
Bst2UI CCWGG 2 cut(s) 220, 319
Bst4CI ACNGT 1 cut(s) 623
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 2 cut(s) 188, 204
BstAUI TGTACA 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 40, 582
BstDSI CCRYGG 1 cut(s) 622
BstEII GGTNACC 1 cut(s) 617
BstF5I GGATG 4 cut(s) 466, 484, 520, 679
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 3 cut(s) 133, 252, 346
BstMAI GTCTC 2 cut(s) 67, 331
BstMBI GATC 3 cut(s) 130, 249, 343
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 5 cut(s) 91, 268, 348, 386, 470
BstNI CCWGG 2 cut(s) 220, 319
BstNSI RCATGY 1 cut(s) 217
BstPAI GACNNNNGTC 1 cut(s) 230
BstPI GGTNACC 1 cut(s) 617
BstSCI CCNGG 5 cut(s) 218, 317, 356, 544, 613
BstSLI GKGCMC 1 cut(s) 264
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 3 cut(s) 351, 353, 373
BsuRI GGCC 2 cut(s) 473, 562
BtgI CCRYGG 1 cut(s) 622
BtrI CACGTC 1 cut(s) 399
BtsCI GGATG 4 cut(s) 466, 484, 520, 679
CfoI GCGC 1 cut(s) 312
Cfr13I GGNCC 4 cut(s) 315, 354, 471, 560
CseI GACGC 3 cut(s) 152, 212, 638
Csp6I GTAC 3 cut(s) 51, 426, 711
CviAII CATG 2 cut(s) 168, 214
CviQI GTAC 3 cut(s) 51, 426, 711
DdeI CTNAG 2 cut(s) 40, 582
DpnI GATC 3 cut(s) 132, 251, 345
DpnII GATC 3 cut(s) 130, 249, 343
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco31I GGTCTC 2 cut(s) 67, 331
Eco47I GGWCC 2 cut(s) 315, 354
Eco88I CYCGRG 1 cut(s) 328
Eco91I GGTNACC 1 cut(s) 617
EcoO109I RGGNCCY 1 cut(s) 354
EcoO65I GGTNACC 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 496
EcoRII CCWGG 2 cut(s) 218, 317
FaeI CATG 2 cut(s) 171, 217
FaiI YATR 7 cut(s) 66, 169, 215, 267, 603, 645, 762
FaqI GGGAC 3 cut(s) 367, 409, 641
FatI CATG 2 cut(s) 167, 213
FauI CCCGC 2 cut(s) 305, 344
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 5 cut(s) 305, 308, 340, 367, 387
FokI GGATG 4 cut(s) 473, 491, 527, 686
Fsp4HI GCNGC 5 cut(s) 305, 308, 340, 367, 387
FspBI CTAG 3 cut(s) 122, 435, 492
GlaI GCGC 1 cut(s) 311
GluI GCNGC 5 cut(s) 305, 308, 340, 367, 387
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 2 cut(s) 473, 562
HapII CCGG 6 cut(s) 255, 358, 413, 545, 597, 614
HgaI GACGC 3 cut(s) 152, 212, 638
HhaI GCGC 1 cut(s) 312
Hin1I GRCGYC 2 cut(s) 188, 204
Hin1II CATG 2 cut(s) 171, 217
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HincII GTYRAC 2 cut(s) 235, 757
HindII GTYRAC 2 cut(s) 235, 757
HinfI GANTC 7 cut(s) 26, 44, 125, 285, 431, 541, 593
HpaII CCGG 6 cut(s) 255, 358, 413, 545, 597, 614
HphI GGTGA 1 cut(s) 659
Hpy166II GTNNAC 4 cut(s) 51, 235, 611, 757
Hpy188I TCNGA 8 cut(s) 130, 284, 336, 348, 406, 478, 641, 707
Hpy188III TCNNGA 2 cut(s) 255, 597
Hpy8I GTNNAC 4 cut(s) 51, 235, 611, 757
Hpy99I CGWCG 6 cut(s) 190, 193, 206, 239, 242, 377
HpyAV CCTTC 2 cut(s) 499, 529
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4IV ACGT 3 cut(s) 7, 188, 398
HpyCH4V TGCA 2 cut(s) 156, 729
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 268, 348, 386, 470
HpyF3I CTNAG 2 cut(s) 40, 582
HpySE526I ACGT 3 cut(s) 7, 188, 398
Hsp92I GRCGYC 2 cut(s) 188, 204
Hsp92II CATG 2 cut(s) 171, 217
HspAI GCGC 1 cut(s) 310
KflI GGGWCCC 1 cut(s) 354
Kpn2I TCCGGA 2 cut(s) 254, 596
Kzo9I GATC 3 cut(s) 130, 249, 343
LmnI GCTCC 5 cut(s) 276, 336, 348, 374, 442
Lsp1109I GCAGC 3 cut(s) 351, 353, 373
LweI GCATC 3 cut(s) 451, 568, 664
MaeI CTAG 3 cut(s) 122, 435, 492
MaeII ACGT 3 cut(s) 7, 188, 398
MaeIII GTNAC 3 cut(s) 3, 617, 766
MalI GATC 3 cut(s) 132, 251, 345
MbiI CCGCTC 2 cut(s) 244, 351
MboI GATC 3 cut(s) 130, 249, 343
MboII GAAGA 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 2 cut(s) 466, 496
MlyI GAGTC 4 cut(s) 20, 119, 425, 602
MmeI TCCRAC 2 cut(s) 201, 314
MroI TCCGGA 2 cut(s) 254, 596
MslI CAYNNNNRTG 1 cut(s) 212
MspI CCGG 6 cut(s) 255, 358, 413, 545, 597, 614
MspR9I CCNGG 5 cut(s) 220, 319, 358, 546, 615
MvaI CCWGG 2 cut(s) 220, 319
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 5 cut(s) 91, 268, 348, 386, 470
NciI CCSGG 3 cut(s) 358, 546, 615
NdeII GATC 3 cut(s) 130, 249, 343
NlaIII CATG 2 cut(s) 171, 217
NlaIV GGNNCC 5 cut(s) 35, 263, 316, 355, 356
NmeAIII GCCGAG 1 cut(s) 588
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 217
PciI ACATGT 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 3 cut(s) 44, 285, 541
PkrI GCNGC 5 cut(s) 306, 309, 341, 368, 388
Ple19I CGATCG 1 cut(s) 346
PleI GAGTC 4 cut(s) 20, 119, 425, 601
PpsI GAGTC 4 cut(s) 20, 119, 425, 601
PpuMI RGGWCCY 1 cut(s) 354
PscI ACATGT 1 cut(s) 213
PshAI GACNNNNGTC 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 354
Psp6I CCWGG 2 cut(s) 218, 317
PspEI GGTNACC 1 cut(s) 617
PspGI CCWGG 2 cut(s) 218, 317
PspN4I GGNNCC 5 cut(s) 35, 263, 316, 355, 356
PspPI GGNCC 4 cut(s) 315, 354, 471, 560
PspPPI RGGWCCY 1 cut(s) 354
PvuI CGATCG 1 cut(s) 346
RsaI GTAC 3 cut(s) 52, 427, 712
RsaNI GTAC 3 cut(s) 51, 426, 711
RseI CAYNNNNRTG 1 cut(s) 212
SalI GTCGAC 1 cut(s) 233
SatI GCNGC 5 cut(s) 305, 308, 340, 367, 387
Sau3AI GATC 3 cut(s) 130, 249, 343
Sau96I GGNCC 4 cut(s) 315, 354, 471, 560
SchI GAGTC 4 cut(s) 20, 119, 425, 602
ScrFI CCNGG 5 cut(s) 220, 319, 358, 546, 615
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 3 cut(s) 451, 568, 664
SinI GGWCC 2 cut(s) 315, 354
SmiMI CAYNNNNRTG 1 cut(s) 212
Sse9I AATT 2 cut(s) 466, 496
SsiI CCGC 6 cut(s) 102, 244, 304, 307, 312, 351
SspMI CTAG 3 cut(s) 122, 435, 492
StyD4I CCNGG 5 cut(s) 218, 317, 356, 544, 613
TaaI ACNGT 1 cut(s) 623
TaiI ACGT 3 cut(s) 10, 191, 401
TaqI TCGA 6 cut(s) 24, 201, 210, 234, 500, 734
TaqII GACCGA 1 cut(s) 313
TasI AATT 2 cut(s) 466, 496
TatI WGTACW 1 cut(s) 50
TauI GCSGC 2 cut(s) 307, 310
TfiI GAWTC 3 cut(s) 44, 285, 541
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 3 cut(s) 339, 366, 386
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 277, 666
TspGWI ACGGA 2 cut(s) 361, 443
VpaK11BI GGWCC 2 cut(s) 315, 354
XapI RAATTY 1 cut(s) 496
XceI RCATGY 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 3 cut(s) 122, 435, 492
ZraI GACGTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.