Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002737

Physical Location & Seq

Genomic Coordinates Reverse (-)

24746123 .. 24747043

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1166900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGACGCCGATGGGCCAGGCCGCCGCCGCCGAAGTGTACGTGCCGATGACCCTTCAAGCATGGCGGGGTCTCGTGAACTGGGTGGGCTTCTTCTACCAGATTATTCTTCAGATCCTGAGAGGCGCGCCTTGCCTTCCTCACCTGCTGTCCTGCATTTCTTCCTCTTCTTCTCCTGCTTTCAGGCCTCTGCCAGTCGCCGAAGTCCCTCTCAACGACTTGTCGTCCTCCGCCCACGTCGAAAACGGCGTCGTGGATGGTCGCCCAGTCGAAAAGCTCACGGTGGTTCTTGATTTGGATGAGACTCTAGTGTGTGCTTATGAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

109

Amino Acids

11.68

Weight (kDa)

4.67

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55960
fragaria_vesca	FvH4_6g11400 FvH4_6g11400 FvH4_7g24520
malus_domestica	MD01G1153200.v1.1 MD04G1153700.v1.1 MD07G1222200.v1.1 MD12G1166900.v1.1
prunus_persica	Prupe.2G250400_v2.0.a1 Prupe.6G277800_v2.0.a1
pyrus_communis	pycom01g17080 pycom07g20080 pycom12g15890
rosa_chinensis	RchiOBHm_Chr1g0370271 RchiOBHm_Chr1g0370291 RchiOBHm_Chr3g0463021
rosa_laevigata	RLG00000024816 RLG00000027058 RLG00000027059 RLG00000027062
rosa_multiflora	Rmu_sc0000766.1_g000029 Rmu_sc0001657.1_g000001 Rmu_sc0006707.1_g000006 Rmu_sc0008124.1_g000028
rosa_roxburghii	Rroxscaffold_4G00286680 Rroxscaffold_4G00287340 Rroxscaffold_6G00417040
rosa_rugosa	Rorug01G0355600 Rorug03G0061100 Rorug03G0061200 Rorug03G0061200
rosa_samantha	Rh1AG363900 Rh1BG327000 Rh1BG327100 Rh1DG357400 Rh3AG118800 Rh3DG124700
rosa_wichuraiana	Rw1G032030 Rw3G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	150
AccII	CGCG	1 cut(s)	125
AciI	CCGC	5 cut(s)	21, 24, 27, 64, 228
AclWI	GGATC	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	92
AcyI	GRCGYC	2 cut(s)	5, 246
AfaI	GTAC	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	56
AhdI	GACNNNNNGTC	1 cut(s)	220
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
Alw26I	GTCTC	3 cut(s)	74, 293, 314
AlwI	GGATC	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	3 cut(s)	13, 18, 182
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
AscI	GGCGCGCC	1 cut(s)	123
AspLEI	GCGC	2 cut(s)	125, 127
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	131
BauI	CACGAG	1 cut(s)	71
BccI	CCATC	2 cut(s)	4, 248
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	17
BcoDI	GTCTC	3 cut(s)	74, 293, 314
BfaI	CTAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	150
BisI	GCNGC	3 cut(s)	21, 24, 27
BlsI	GCNGC	3 cut(s)	22, 25, 28
Bme1390I	CCNGG	1 cut(s)	17
BmeRI	GACNNNNNGTC	1 cut(s)	220
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	17
BmrI	ACTGGG	2 cut(s)	88, 257
BmuI	ACTGGG	2 cut(s)	88, 257
BsaAI	YACGTR	1 cut(s)	40
BsaHI	GRCGYC	2 cut(s)	5, 246
BsaI	GGTCTC	1 cut(s)	74
Bse1I	ACTGG	3 cut(s)	83, 191, 263
BseBI	CCWGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	259, 301
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	3 cut(s)	83, 191, 263
BsePI	GCGCGC	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	3 cut(s)	15, 20, 184
BslFI	GGGAC	1 cut(s)	188
BsmAI	GTCTC	3 cut(s)	74, 293, 314
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	15, 20, 184
Bso31I	GGTCTC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	5 cut(s)	21, 24, 27, 64, 228
BspANI	GGCC	3 cut(s)	15, 20, 184
BspCNI	CTCAG	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	125
BspMI	ACCTGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	74
BsrI	ACTGG	3 cut(s)	83, 191, 263
BssHII	GCGCGC	1 cut(s)	123
BssMI	GATC	1 cut(s)	111
BssNI	GRCGYC	2 cut(s)	5, 246
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	2 cut(s)	5, 246
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	116
BstF5I	GGATG	2 cut(s)	259, 301
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	2 cut(s)	125, 127
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	3 cut(s)	74, 293, 314
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 129
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	15, 20, 184
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	259, 301
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	2 cut(s)	125, 127
Cfr13I	GGNCC	1 cut(s)	13
CseI	GACGC	2 cut(s)	13, 235
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	2 cut(s)	60, 324
CviJI	RGCY	5 cut(s)	15, 20, 87, 184, 274
CviKI_1	RGCY	5 cut(s)	15, 20, 87, 184, 274
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
DriI	GACNNNNNGTC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	169
Eam1105I	GACNNNNNGTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	63, 327
FaiI	YATR	3 cut(s)	61, 318, 325
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	2 cut(s)	59, 323
FauI	CCCGC	1 cut(s)	57
Fnu4HI	GCNGC	3 cut(s)	21, 24, 27
FokI	GGATG	2 cut(s)	266, 308
Fsp4HI	GCNGC	3 cut(s)	21, 24, 27
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	2 cut(s)	124, 126
GluI	GCNGC	3 cut(s)	21, 24, 27
HaeIII	GGCC	3 cut(s)	15, 20, 184
HgaI	GACGC	2 cut(s)	13, 235
HhaI	GCGC	2 cut(s)	125, 127
Hin1I	GRCGYC	2 cut(s)	5, 246
Hin1II	CATG	2 cut(s)	63, 327
Hin6I	GCGC	2 cut(s)	123, 125
HinP1I	GCGC	2 cut(s)	123, 125
HinfI	GANTC	1 cut(s)	301
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	2 cut(s)	37, 76
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	3 cut(s)	73, 115, 287
Hpy8I	GTNNAC	2 cut(s)	37, 76
Hpy99I	CGWCG	2 cut(s)	239, 251
HpyAV	CCTTC	2 cut(s)	62, 143
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	39, 234
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 129
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	2 cut(s)	39, 234
Hsp92I	GRCGYC	2 cut(s)	5, 246
Hsp92II	CATG	2 cut(s)	63, 327
HspAI	GCGC	2 cut(s)	123, 125
Kzo9I	GATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	2 cut(s)	39, 234
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	5 cut(s)	82, 98, 150, 156, 159
MflI	RGATCY	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	6 cut(s)	113, 147, 172, 195, 216, 235
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	26, 129
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	63, 327
PalAI	GGCGCGCC	1 cut(s)	123
PaqCI	CACCTGC	1 cut(s)	150
PauI	GCGCGC	1 cut(s)	123
PceI	AGGCCT	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PkrI	GCNGC	3 cut(s)	22, 25, 28
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	111
PteI	GCGCGC	1 cut(s)	123
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SatI	GCNGC	3 cut(s)	21, 24, 27
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	4 cut(s)	42, 144, 237, 276
SgsI	GGCGCGCC	1 cut(s)	123
SseBI	AGGCCT	1 cut(s)	184
SsiI	CCGC	5 cut(s)	21, 24, 27, 64, 228
SspMI	CTAG	1 cut(s)	305
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	42, 237
TaqI	TCGA	2 cut(s)	237, 267
TauI	GCSGC	3 cut(s)	23, 26, 29
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.