Rmu_sc0008124.1_g000028

Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008124.1
Physical Location & Seq
Reverse (-)
126467 .. 132761
6295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008124.1_g000028.1.cds

Sequence Viewer

Length: 1518 bp
atggcgtcggtgggccaggccgcggaggtgtacgagccgaagccactccaagtctggcgagctatgatgaactggttgggcttcttcttccagatcatcgttcagatcctcagaggcgccccttgcctcgctcatttcctgtcgtacgttcctcttctcgcttcttcttcttcttcttctttcaggcccttgccggtcagtgaaatccctctcaacgacacgtcgtcctccgctcaccccaacctcgaaaacggcgtcgtaaccgacgatcaccgccttcaaaagctcacggtagttcttgacttagatgagacgctggtgtgtgcctacgaaacatctagcttgcctgctattgttcggacccaagcaacagatgctgggttgaagtggtttgagatcgaatgtgtatcttcagacaaggagtctgatggtaaaccgaagatcagttatgtgacagtgtttgaacgtcctggtttgcacgagttcttgaaacggatctgtgaatttgctgatcttgtcctatttactgctggtcttgaaggatatgctagaccacttgttgacagaattgatgtggagaacagatttaagcttcgtctttatcggccttctacagttaccacggaaaaccgggatcatgtgaaagatttgtcttgtatatcaaaagatctctgtcgaattgttattgttgacaacaacccatttagttttctgctgcaaccagtgaacggagtaccatgcattcccttttctgctggacatccatatgatgatcagctcttggaggtgctgcttccactcctccagcacctcgcccaacaaaaggatgtgaggcctgtgctttatgagagattccacatgcccgaatggagtgttccttcatcgatgctggtcatgaaaatgctcaagttcattggattacctgcaagggtggcttcatcggatatattcaagtatgatgaaggttctcagtgcacgccgacgccggaacacgaaacggactccgtgagagcggttatggagagtagaggcggcttgacgtgtagatcatcggacagggagagtggcgaattggaaacggagcaaaggcgttggaagcgaggaagccttgtcggagtcaaaaatgatcaatctctctcttttctccgatccaaatctcaaacccaaatcaataacaactcagccctcaccgtctcaaccatttttgactccgacaaggcttcctcgcttccaacgccttttttccgtttccaattcgccactctccctgtccgacgatctacacgtcaagccgtctctactctccataaccgctttcacggagtccgtttcgtgttccggcgtcggcatgcactgagaaccttcttaggaagaggaaacgcgtcgttttgtaatgcggacatctccagcctcgtcgatcaactccaggggaagcttggcgtttccgtcgcagctctcgttcttgccggtctccctacggtaagtgttttccccaatttgatttgtgttggtaagtga

Protein Analysis

505

Amino Acids

56.48

Weight (kDa)

8.24

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 931
AccB1I GGYRCC 1 cut(s) 116
AccBSI CCGCTC 2 cut(s) 233, 1013
AccII CGCG 2 cut(s) 23, 1382
AciI CCGC 8 cut(s) 21, 23, 231, 274, 1013, 1032, 1312, 1397
AclWI GGATC 4 cut(s) 100, 503, 642, 1143
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 5 cut(s) 5, 117, 255, 983, 1342
AfaI GTAC 3 cut(s) 32, 146, 735
AfiI CCNNNNNNNGG 3 cut(s) 22, 728, 823
AflIII ACRYGT 4 cut(s) 219, 1040, 1283, 1380
AgsI TTSAA 6 cut(s) 281, 385, 464, 490, 539, 952
AhdI GACNNNNNGTC 2 cut(s) 223, 421
AjiI CACGTC 3 cut(s) 222, 1041, 1286
AjnI CCWGG 3 cut(s) 15, 469, 1425
AluBI AGCT 7 cut(s) 62, 286, 342, 592, 778, 1435, 1454
AluI AGCT 7 cut(s) 62, 286, 342, 592, 778, 1435, 1454
Alw21I GWGCWC 1 cut(s) 977
Alw26I GTCTC 4 cut(s) 305, 1198, 1300, 1475
Alw44I GTGCAC 1 cut(s) 973
AlwI GGATC 4 cut(s) 100, 503, 642, 1143
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 5 cut(s) 13, 18, 185, 605, 833
ApaLI GTGCAC 1 cut(s) 973
ApeKI GCWGC 3 cut(s) 715, 790, 1451
ApoI RAATTY 1 cut(s) 503
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 3 cut(s) 13, 186, 360
AsuC2I CCSGG 1 cut(s) 632
AsuHPI GGTGA 3 cut(s) 227, 263, 1180
AvaII GGWCC 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 977
BanI GGYRCC 1 cut(s) 116
BauI CACGAG 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 977
BbvI GCAGC 3 cut(s) 702, 777, 1463
BccI CCATC 1 cut(s) 422
BceAI ACGGC 2 cut(s) 268, 1277
BciT130I CCWGG 3 cut(s) 17, 471, 1427
BclI TGATCA 2 cut(s) 772, 1126
BcnI CCSGG 1 cut(s) 632
BcoDI GTCTC 4 cut(s) 305, 1198, 1300, 1475
BfaI CTAG 2 cut(s) 339, 549
BfmI CTRYAG 1 cut(s) 612
BfoI RGCGCY 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 931
BglII AGATCT 1 cut(s) 667
BisI GCNGC 5 cut(s) 21, 716, 791, 1033, 1452
BlsI GCNGC 5 cut(s) 22, 717, 792, 1034, 1453
Bme1390I CCNGG 4 cut(s) 17, 471, 632, 1427
Bme18I GGWCC 1 cut(s) 360
BmeRI GACNNNNNGTC 2 cut(s) 223, 421
BmgBI CACGTC 3 cut(s) 222, 1041, 1286
BmgT120I GGNCC 3 cut(s) 13, 186, 360
BmiI GGNNCC 2 cut(s) 118, 362
BmrFI CCNGG 4 cut(s) 17, 471, 632, 1427
BmsI GCATC 2 cut(s) 364, 876
BpmI CTGGAG 3 cut(s) 788, 1390, 1409
BpuEI CTTGAG 1 cut(s) 890
BpuMI CCSGG 1 cut(s) 632
Bsa29I ATCGAT 1 cut(s) 884
BsaBI GATNNNNATC 1 cut(s) 1153
BsaHI GRCGYC 5 cut(s) 5, 117, 255, 983, 1342
BsaI GGTCTC 1 cut(s) 1475
BsaJI CCNNGG 3 cut(s) 21, 621, 1426
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 728, 823
Bse118I RCCGGY 2 cut(s) 193, 1466
Bse1I ACTGG 2 cut(s) 77, 722
Bse8I GATNNNNATC 1 cut(s) 1153
BseBI CCWGG 3 cut(s) 17, 471, 1427
BseCI ATCGAT 1 cut(s) 884
BseDI CCNNGG 3 cut(s) 21, 621, 1426
BseGI GGATG 2 cut(s) 760, 832
BseJI GATNNNNATC 1 cut(s) 1153
BseLI CCNNNNNNNGG 3 cut(s) 22, 728, 823
BseMII CTCAG 4 cut(s) 124, 983, 1194, 1346
BseNI ACTGG 2 cut(s) 77, 722
BseRI GAGGAG 1 cut(s) 791
BseSI GKGCMC 1 cut(s) 977
BseXI GCAGC 3 cut(s) 702, 777, 1463
BseYI CCCAGC 1 cut(s) 377
Bsh1236I CGCG 2 cut(s) 23, 1382
BshFI GGCC 5 cut(s) 15, 20, 187, 607, 835
BshNI GGYRCC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 884
BsiHKAI GWGCWC 1 cut(s) 977
BsiSI CCGG 5 cut(s) 194, 631, 986, 1339, 1467
BsiWI CGTACG 1 cut(s) 144
BslI CCNNNNNNNGG 3 cut(s) 22, 728, 823
BsmAI GTCTC 4 cut(s) 305, 1198, 1300, 1475
BsmBI CGTCTC 3 cut(s) 305, 1198, 1300
BsmI GAATGC 1 cut(s) 741
BsnI GGCC 5 cut(s) 15, 20, 187, 607, 835
Bso31I GGTCTC 1 cut(s) 1475
Bsp1286I GDGCHC 1 cut(s) 977
BspACI CCGC 8 cut(s) 21, 23, 231, 274, 1013, 1032, 1312, 1397
BspANI GGCC 5 cut(s) 15, 20, 187, 607, 835
BspCNI CTCAG 4 cut(s) 123, 982, 1193, 1347
BspDI ATCGAT 1 cut(s) 884
BspFNI CGCG 2 cut(s) 23, 1382
BspHI TCATGA 1 cut(s) 894
BspLI GGNNCC 2 cut(s) 118, 362
BspMI ACCTGC 1 cut(s) 931
BspPI GGATC 4 cut(s) 100, 503, 642, 1143
BspT107I GGYRCC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 1475
BsrBI CCGCTC 2 cut(s) 233, 1013
BsrFI RCCGGY 2 cut(s) 193, 1466
BsrI ACTGG 2 cut(s) 77, 722
BssAI RCCGGY 2 cut(s) 193, 1466
BssECI CCNNGG 3 cut(s) 21, 621, 1426
BssNI GRCGYC 5 cut(s) 5, 117, 255, 983, 1342
BssSI CACGAG 1 cut(s) 479
Bst2BI CACGAG 1 cut(s) 479
Bst2UI CCWGG 3 cut(s) 17, 471, 1427
Bst4CI ACNGT 5 cut(s) 292, 457, 616, 1192, 1480
Bst6I CTCTTC 2 cut(s) 159, 1366
BstACI GRCGYC 5 cut(s) 5, 117, 255, 983, 1342
BstAPI GCANNNNNTGC 1 cut(s) 374
BstC8I GCNNGC 5 cut(s) 60, 344, 348, 977, 1350
BstDEI CTNAG 6 cut(s) 110, 304, 969, 1180, 1355, 1366
BstDSI CCRYGG 2 cut(s) 21, 621
BstF5I GGATG 2 cut(s) 760, 832
BstFNI CGCG 2 cut(s) 23, 1382
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstMAI GTCTC 4 cut(s) 305, 1198, 1300, 1475
BstMWI GCNNNNNNNGC 5 cut(s) 123, 374, 932, 1096, 1234
BstNI CCWGG 3 cut(s) 17, 471, 1427
BstNSI RCATGY 2 cut(s) 862, 1352
BstSCI CCNGG 4 cut(s) 15, 469, 630, 1425
BstSFI CTRYAG 1 cut(s) 612
BstSLI GKGCMC 1 cut(s) 977
BstUI CGCG 2 cut(s) 23, 1382
BstV1I GCAGC 3 cut(s) 702, 777, 1463
BstX2I RGATCY 3 cut(s) 105, 495, 667
BstYI RGATCY 3 cut(s) 105, 495, 667
Bsu15I ATCGAT 1 cut(s) 884
BsuRI GGCC 5 cut(s) 15, 20, 187, 607, 835
BsuTUI ATCGAT 1 cut(s) 884
BtgI CCRYGG 2 cut(s) 21, 621
BtrI CACGTC 3 cut(s) 222, 1041, 1286
BtsCI GGATG 2 cut(s) 760, 832
BtsIMutI CAGTG 5 cut(s) 205, 462, 729, 977, 1352
BveI ACCTGC 1 cut(s) 931
Cac8I GCNNGC 5 cut(s) 60, 344, 348, 977, 1350
CaiI CAGNNNCTG 1 cut(s) 377
CciI TCATGA 1 cut(s) 894
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 2 cut(s) 193, 1466
Cfr13I GGNCC 3 cut(s) 13, 186, 360
Cfr42I CCGCGG 1 cut(s) 24
ClaI ATCGAT 1 cut(s) 884
CseI GACGC 5 cut(s) 244, 322, 991, 1331, 1371
Csp6I GTAC 3 cut(s) 31, 145, 734
CviAII CATG 5 cut(s) 638, 738, 859, 895, 1349
CviQI GTAC 3 cut(s) 31, 145, 734
DdeI CTNAG 6 cut(s) 110, 304, 969, 1180, 1355, 1366
DinI GGCGCC 1 cut(s) 118
DriI GACNNNNNGTC 2 cut(s) 223, 421
Eam1104I CTCTTC 2 cut(s) 159, 1366
Eam1105I GACNNNNNGTC 2 cut(s) 223, 421
EarI CTCTTC 2 cut(s) 159, 1366
Eco147I AGGCCT 1 cut(s) 835
Eco31I GGTCTC 1 cut(s) 1475
Eco47I GGWCC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 186
EcoRII CCWGG 3 cut(s) 15, 469, 1425
EcoT22I ATGCAT 1 cut(s) 743
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
Esp3I CGTCTC 3 cut(s) 305, 1198, 1300
FaeI CATG 5 cut(s) 641, 741, 862, 898, 1352
FalI AAGNNNNNCTT 2 cut(s) 919, 951
FatI CATG 5 cut(s) 637, 737, 858, 894, 1348
FauNDI CATATG 1 cut(s) 766
FbaI TGATCA 2 cut(s) 772, 1126
Fnu4HI GCNGC 5 cut(s) 21, 716, 791, 1033, 1452
FokI GGATG 2 cut(s) 747, 839
Fsp4HI GCNGC 5 cut(s) 21, 716, 791, 1033, 1452
FspBI CTAG 2 cut(s) 339, 549
GlaI GCGC 1 cut(s) 118
GluI GCNGC 5 cut(s) 21, 716, 791, 1033, 1452
GsaI CCCAGC 1 cut(s) 381
GsuI CTGGAG 3 cut(s) 788, 1390, 1409
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 5 cut(s) 15, 20, 187, 607, 835
HapII CCGG 5 cut(s) 194, 631, 986, 1339, 1467
HgaI GACGC 5 cut(s) 244, 322, 991, 1331, 1371
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 5 cut(s) 5, 117, 255, 983, 1342
Hin1II CATG 5 cut(s) 641, 741, 862, 898, 1352
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 2 cut(s) 562, 691
HindII GTYRAC 2 cut(s) 562, 691
HindIII AAGCTT 2 cut(s) 590, 1433
HinfI GANTC 6 cut(s) 422, 852, 1001, 1116, 1208, 1323
HpaII CCGG 5 cut(s) 194, 631, 986, 1339, 1467
HphI GGTGA 3 cut(s) 227, 263, 1180
Hpy166II GTNNAC 6 cut(s) 31, 434, 562, 691, 727, 975
Hpy188III TCNNGA 5 cut(s) 91, 299, 487, 536, 895
Hpy8I GTNNAC 6 cut(s) 31, 434, 562, 691, 727, 975
HpyAV CCTTC 6 cut(s) 287, 533, 618, 888, 956, 1372
HpyCH4III ACNGT 5 cut(s) 292, 457, 616, 1192, 1480
HpyCH4IV ACGT 5 cut(s) 147, 221, 466, 1040, 1285
HpyCH4V TGCA 6 cut(s) 478, 718, 741, 926, 975, 1352
HpyF10VI GCNNNNNNNGC 5 cut(s) 123, 374, 932, 1096, 1234
HpyF3I CTNAG 6 cut(s) 110, 304, 969, 1180, 1355, 1366
HpySE526I ACGT 5 cut(s) 147, 221, 466, 1040, 1285
Hsp92I GRCGYC 5 cut(s) 5, 117, 255, 983, 1342
Hsp92II CATG 5 cut(s) 641, 741, 862, 898, 1352
HspAI GCGC 1 cut(s) 117
KasI GGCGCC 1 cut(s) 116
Ksp22I TGATCA 2 cut(s) 772, 1126
KspI CCGCGG 1 cut(s) 24
LmnI GCTCC 1 cut(s) 1081
Lsp1109I GCAGC 3 cut(s) 702, 777, 1463
LweI GCATC 2 cut(s) 364, 876
MaeI CTAG 2 cut(s) 339, 549
MaeII ACGT 5 cut(s) 147, 221, 466, 1040, 1285
MaeIII GTNAC 3 cut(s) 259, 451, 616
MbiI CCGCTC 2 cut(s) 233, 1013
MflI RGATCY 3 cut(s) 105, 495, 667
MhlI GDGCHC 1 cut(s) 977
MluCI AATT 6 cut(s) 503, 567, 678, 1070, 1253, 1495
MluI ACGCGT 1 cut(s) 1380
Mly113I GGCGCC 1 cut(s) 117
MlyI GAGTC 5 cut(s) 431, 995, 1125, 1202, 1332
MmeI TCCRAC 5 cut(s) 1073, 1093, 1236, 1256, 1297
Mph1103I ATGCAT 1 cut(s) 743
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 2 cut(s) 765, 899
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 5 cut(s) 194, 631, 986, 1339, 1467
MspR9I CCNGG 4 cut(s) 17, 471, 632, 1427
Mva1269I GAATGC 1 cut(s) 741
MvaI CCWGG 3 cut(s) 17, 471, 1427
MvnI CGCG 2 cut(s) 23, 1382
MwoI GCNNNNNNNGC 5 cut(s) 123, 374, 932, 1096, 1234
NarI GGCGCC 1 cut(s) 117
NciI CCSGG 1 cut(s) 632
NdeI CATATG 1 cut(s) 766
NlaIII CATG 5 cut(s) 641, 741, 862, 898, 1352
NlaIV GGNNCC 2 cut(s) 118, 362
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 743
NspI RCATGY 2 cut(s) 862, 1352
PaeI GCATGC 1 cut(s) 1352
PagI TCATGA 1 cut(s) 894
PceI AGGCCT 1 cut(s) 835
PcsI WCGNNNNNNNCGW 4 cut(s) 252, 264, 1282, 1455
PctI GAATGC 1 cut(s) 741
PfeI GAWTC 1 cut(s) 852
Pfl23II CGTACG 1 cut(s) 144
PkrI GCNGC 5 cut(s) 22, 717, 792, 1034, 1453
PleI GAGTC 5 cut(s) 430, 995, 1124, 1202, 1331
PluTI GGCGCC 1 cut(s) 120
PpsI GAGTC 5 cut(s) 430, 995, 1124, 1202, 1331
Psp6I CCWGG 3 cut(s) 15, 469, 1425
PspFI CCCAGC 1 cut(s) 377
PspGI CCWGG 3 cut(s) 15, 469, 1425
PspLI CGTACG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 118, 362
PspPI GGNCC 3 cut(s) 13, 186, 360
PstNI CAGNNNCTG 1 cut(s) 377
PsuI RGATCY 3 cut(s) 105, 495, 667
RsaI GTAC 3 cut(s) 32, 146, 735
RsaNI GTAC 3 cut(s) 31, 145, 734
RseI CAYNNNNRTG 2 cut(s) 765, 899
SacII CCGCGG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 5 cut(s) 21, 716, 791, 1033, 1452
Sau96I GGNCC 3 cut(s) 13, 186, 360
SchI GAGTC 5 cut(s) 431, 995, 1125, 1202, 1332
ScrFI CCNGG 4 cut(s) 17, 471, 632, 1427
SduI GDGCHC 1 cut(s) 977
SfaNI GCATC 2 cut(s) 364, 876
SfcI CTRYAG 1 cut(s) 612
SfoI GGCGCC 1 cut(s) 118
Sfr303I CCGCGG 1 cut(s) 24
SgrBI CCGCGG 1 cut(s) 24
SinI GGWCC 1 cut(s) 360
SmiMI CAYNNNNRTG 2 cut(s) 765, 899
SmlI CTYRAG 1 cut(s) 905
SmoI CTYRAG 1 cut(s) 905
SphI GCATGC 1 cut(s) 1352
Sse9I AATT 6 cut(s) 503, 567, 678, 1070, 1253, 1495
SseBI AGGCCT 1 cut(s) 835
SsiI CCGC 8 cut(s) 21, 23, 231, 274, 1013, 1032, 1312, 1397
SspDI GGCGCC 1 cut(s) 116
SspMI CTAG 2 cut(s) 339, 549
StuI AGGCCT 1 cut(s) 835
StyD4I CCNGG 4 cut(s) 15, 469, 630, 1425
TaaI ACNGT 5 cut(s) 292, 457, 616, 1192, 1480
TaiI ACGT 5 cut(s) 150, 224, 469, 1043, 1288
TaqI TCGA 5 cut(s) 246, 399, 676, 884, 1416
TasI AATT 6 cut(s) 503, 567, 678, 1070, 1253, 1495
TauI GCSGC 2 cut(s) 23, 1035
TfiI GAWTC 1 cut(s) 852
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 5 cut(s) 205, 462, 729, 977, 1359
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 3 cut(s) 715, 790, 1451
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 6 cut(s) 83, 870, 901, 911, 927, 975
TspRI CASTG 5 cut(s) 205, 462, 729, 977, 1359
VneI GTGCAC 1 cut(s) 973
VpaK11BI GGWCC 1 cut(s) 360
XapI RAATTY 1 cut(s) 503
XceI RCATGY 2 cut(s) 862, 1352
XcmI CCANNNNNNNNNTGG 2 cut(s) 51, 1433
XspI CTAG 2 cut(s) 339, 549
Zsp2I ATGCAT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.