Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002737

Physical Location & Seq

Genomic Coordinates Reverse (-)

18321800 .. 18322846

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCTTGGCGTAGTTCTTGATTTGGATGAGACTCTAGTGTGTGCTTATGAGACATGTAGTGTGCCTGCAATTGTTCGCGCTCAAGCAACGGAAGCTGGGATGAAGTGGTTTGAGATAGAATGTCTATCTTCAGAGAAGGAGTCTGATGGTAAACCGAAGATCAATTACGTGACACTGTTTGAACGTCCTGGTTTGGGAGAGTTCTTGAAACGGGTTTCTGCGTTTGCTGATCTTGCGCTATTCACTGCTGGTCTTGAAGATTATGCTAGACCACTTGTTGACAGAATTGATGTGGAGAATCTGTTTCAGCTTCGCCTTTATCGGCCTTCTAGAGTTAGGAATGTCGGGAACTTGTCAAAAGATTTCTCTCGGATTGTCATTGTTGACAATAACCCATTCAGTTTTTTGCTGCAACCGTTGAATGGAATTCCATGCGTTCCATTTTCTGCTGGACAGCCATACGTCGATTATACAGCTTTTGGAGGTGCTGCTTCCGCTTCTCAAGCAGCTCTCCTTGCAAAAAGATGTCAGACCTACGCTTCAGGAGAGATTCGACATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

188

Amino Acids

20.59

Weight (kDa)

5.27

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55960
fragaria_vesca	FvH4_6g11400 FvH4_6g11400 FvH4_7g24520
malus_domestica	MD01G1153200.v1.1 MD04G1153700.v1.1 MD07G1222200.v1.1 MD12G1166900.v1.1
prunus_persica	Prupe.2G250400_v2.0.a1 Prupe.6G277800_v2.0.a1
pyrus_communis	pycom01g17080 pycom07g20080 pycom12g15890
rosa_chinensis	RchiOBHm_Chr1g0370271 RchiOBHm_Chr1g0370291 RchiOBHm_Chr3g0463021
rosa_laevigata	RLG00000024816 RLG00000027058 RLG00000027059 RLG00000027062
rosa_multiflora	Rmu_sc0000766.1_g000029 Rmu_sc0001657.1_g000001 Rmu_sc0006707.1_g000006 Rmu_sc0008124.1_g000028
rosa_roxburghii	Rroxscaffold_4G00286680 Rroxscaffold_4G00287340 Rroxscaffold_6G00417040
rosa_rugosa	Rorug01G0355600 Rorug03G0061100 Rorug03G0061200 Rorug03G0061200
rosa_samantha	Rh1AG363900 Rh1BG327000 Rh1BG327100 Rh1DG357400 Rh3AG118800 Rh3DG124700
rosa_wichuraiana	Rw1G032030 Rw3G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	78
AciI	CCGC	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	426
AcuI	CTGAAG	2 cut(s)	114, 525
AfiI	CCNNNNNNNGG	2 cut(s)	194, 422
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	4 cut(s)	182, 208, 257, 421
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	4 cut(s)	95, 310, 476, 509
AluI	AGCT	4 cut(s)	95, 310, 476, 509
Alw26I	GTCTC	2 cut(s)	23, 44
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	3 cut(s)	409, 488, 506
ApoI	RAATTY	1 cut(s)	426
AspLEI	GCGC	2 cut(s)	80, 238
BarI	GAAGNNNNNNTAC	2 cut(s)	149, 181
BbvI	GCAGC	3 cut(s)	396, 475, 518
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	23, 44
BfaI	CTAG	3 cut(s)	35, 267, 330
BisI	GCNGC	3 cut(s)	410, 489, 507
BlsI	GCNGC	3 cut(s)	411, 490, 508
Bme1390I	CCNGG	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	189
BpuEI	CTTGAG	2 cut(s)	66, 486
BsaAI	YACGTR	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 422
BseBI	CCWGG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	31, 105
BseLI	CCNNNNNNNGG	2 cut(s)	194, 422
BseXI	GCAGC	3 cut(s)	396, 475, 518
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	194, 422
BsmAI	GTCTC	2 cut(s)	23, 44
BsnI	GGCC	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	159, 229
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	78
BssMI	GATC	2 cut(s)	159, 229
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	177, 417
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	31, 105
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	80, 238
BstKTI	GATC	2 cut(s)	162, 232
BstMAI	GTCTC	2 cut(s)	23, 44
BstMBI	GATC	2 cut(s)	159, 229
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 233, 494, 503, 515
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	187
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	396, 475, 518
BsuRI	GGCC	1 cut(s)	325
BtsCI	GGATG	2 cut(s)	31, 105
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	173, 243
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	2 cut(s)	80, 238
CviAII	CATG	3 cut(s)	54, 432, 557
CviJI	RGCY	7 cut(s)	95, 310, 325, 457, 476, 509, 561
CviKI_1	RGCY	7 cut(s)	95, 310, 325, 457, 476, 509, 561
DpnI	GATC	2 cut(s)	161, 231
DpnII	GATC	2 cut(s)	159, 229
Eco57I	CTGAAG	2 cut(s)	114, 525
EcoRI	GAATTC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	3 cut(s)	57, 435, 560
FaiI	YATR	7 cut(s)	48, 55, 264, 433, 460, 471, 558
FatI	CATG	3 cut(s)	53, 431, 556
Fnu4HI	GCNGC	3 cut(s)	410, 489, 507
FokI	GGATG	2 cut(s)	38, 112
Fsp4HI	GCNGC	3 cut(s)	410, 489, 507
FspBI	CTAG	3 cut(s)	35, 267, 330
GlaI	GCGC	2 cut(s)	79, 237
GluI	GCNGC	3 cut(s)	410, 489, 507
GsaI	CCCAGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	325
HhaI	GCGC	2 cut(s)	80, 238
Hin1II	CATG	3 cut(s)	57, 435, 560
Hin6I	GCGC	2 cut(s)	78, 236
HinP1I	GCGC	2 cut(s)	78, 236
HincII	GTYRAC	2 cut(s)	280, 385
HindII	GTYRAC	2 cut(s)	280, 385
HinfI	GANTC	4 cut(s)	31, 140, 298, 550
Hpy166II	GTNNAC	3 cut(s)	152, 280, 385
Hpy188I	TCNGA	4 cut(s)	133, 145, 372, 531
Hpy188III	TCNNGA	6 cut(s)	17, 205, 254, 330, 346, 543
Hpy8I	GTNNAC	3 cut(s)	152, 280, 385
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	2 cut(s)	130, 336
HpyCH4III	ACNGT	2 cut(s)	177, 417
HpyCH4IV	ACGT	3 cut(s)	168, 184, 462
HpyCH4V	TGCA	3 cut(s)	68, 412, 518
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 233, 494, 503, 515
HpySE526I	ACGT	3 cut(s)	168, 184, 462
Hsp92II	CATG	3 cut(s)	57, 435, 560
HspAI	GCGC	2 cut(s)	78, 236
Kzo9I	GATC	2 cut(s)	159, 229
LpnPI	CCDG	7 cut(s)	78, 81, 174, 201, 234, 435, 528
Lsp1109I	GCAGC	3 cut(s)	396, 475, 518
MaeI	CTAG	3 cut(s)	35, 267, 330
MaeII	ACGT	3 cut(s)	168, 184, 462
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	161, 231
MboI	GATC	2 cut(s)	159, 229
MboII	GAAGA	3 cut(s)	120, 169, 269
MfeI	CAATTG	1 cut(s)	69
MluCI	AATT	4 cut(s)	69, 163, 285, 426
MlyI	GAGTC	2 cut(s)	25, 149
MnlI	CCTC	1 cut(s)	476
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	5 cut(s)	92, 233, 494, 503, 515
NdeII	GATC	2 cut(s)	159, 229
NlaIII	CATG	3 cut(s)	57, 435, 560
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	57
PciI	ACATGT	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	298, 550
PkrI	GCNGC	3 cut(s)	411, 490, 508
PleI	GAGTC	2 cut(s)	25, 148
PpsI	GAGTC	2 cut(s)	25, 148
Ppu21I	YACGTR	1 cut(s)	169
PscI	ACATGT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	187
SatI	GCNGC	3 cut(s)	410, 489, 507
Sau3AI	GATC	2 cut(s)	159, 229
SchI	GAGTC	2 cut(s)	25, 149
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	9 cut(s)	97, 171, 187, 312, 465, 478, 487, 511, 536
SmlI	CTYRAG	2 cut(s)	81, 501
SmoI	CTYRAG	2 cut(s)	81, 501
Sse9I	AATT	4 cut(s)	69, 163, 285, 426
SsiI	CCGC	1 cut(s)	495
SspMI	CTAG	3 cut(s)	35, 267, 330
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	177, 417
TaiI	ACGT	3 cut(s)	171, 187, 465
TaqI	TCGA	2 cut(s)	465, 553
TasI	AATT	4 cut(s)	69, 163, 285, 426
TfiI	GAWTC	2 cut(s)	298, 550
TscAI	CASTG	2 cut(s)	180, 250
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	3 cut(s)	409, 488, 506
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	2 cut(s)	180, 250
XapI	RAATTY	1 cut(s)	426
XbaI	TCTAGA	1 cut(s)	329
XceI	RCATGY	1 cut(s)	57
XspI	CTAG	3 cut(s)	35, 267, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.