Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002737

Physical Location & Seq

Genomic Coordinates Reverse (-)

22250952 .. 22254049

Gene Structure 3098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGTGGCATGGCCTTGCTCAAGGTACTGTGTCTATGTCGGAGGTTGGGATCTTGTTTTATGGCGATTCGGCTGCCAGTTGCGTTGGGTTGCTGTTTGGGGTTGCATATGGTCGTGTTCGTGTCGAAACGGGGTTGACACTAACCCGACCCTTTACACCAATTGCCACGCCGGGCATTGACCACCATCAAAACTCTCTCACGCTCGCCTTTGAAGCGCGTCGGCCTCTCCATCCCTTCCCTCCTCCAGCTTCGTCCAAAGCAGCATCGCCGAGGAAACAGAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCGGCCTCTCCATCCCTTCCCTCCTTCAGCTTCGTCCAAAACAGCATCGCTTAGGAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTTATTGGCAAAGGGCTAATCAATCAGCTTCTTCTCTTCCGAGTCTGACAACCAAGATAATGGCCGAGTTGACCCAGGGCGAGGTGGTCTACTCGCCCAAGACTCTTCAAGTCTGGCGAGCTCTGCTCAACTGGCTCGCCTTCTTCTCCCAGATCTTCTTCCAAATCCTCCGAGCTCTCGGTCACCACCCCCTCCTCTCTTCTTCCTCCTCCTCCTCCTCTTCCGCTTCTTCCGCCGCCTTCAAATCCCTGCCCGTCGAGCCGCCGGAGAACGACTCCCCCGCCGCCTCCGCCGTTGAAATCGCCGACACCCCCGATTCCGATGACCCTTTTGAAAAGCTCACGGTAGTTCTGGATCTGGATGAAACCCTAGTGTGTGCATATGAAACATCCAGCTTGCCGGCTGTAGTTCGAACTCAAGCAACCGAAGGTGGGTTGAAGTGGTTTGAGCTTGAATGCGTATCTTCGGACAAGGAATGTGATGGAAAACCGAAGGTCAATTATGTCACAGTCTTTGAGCGTCCGGGGTTGCATGACTTCCTAAAACAAGTTAGTCAGTTTGCAGAGCTTGTGTTGTTCACTGCTGGTCTTGAAGGTTATGCTAGACCACTTGTTGACAGAATAGATGTGGATAATCTGTTCAGTTATCGACTTTATCGGCCTTCAACCACCAGCACGGAATACCGGGAGCATGTGAAGGATCTATCTGGGCTATCAAAGGATATGCGGCGAATTGTTGTTGTTGACAACAACCCTTTCAGTTTCTTGTTGCAACCTTTGAATGGAATTCCATGCATTCCATTTTCTGCCGGGCAAACACACGACAAACAGCTTTTGGATGTTCTTCTTCCACTCCTCAAGCAGCTCTCTCTGCAGAAAGATGTGAGGCCTGCCCTTTACGAAAGGTTTCACATGCCCGAATGGTTTCAAAAGCAGGGGATTCCTTCAACTGCGTGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

458

Amino Acids

51.48

Weight (kDa)

7.18

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	251 - 433	6.2e-42	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55960
fragaria_vesca	FvH4_6g11400 FvH4_6g11400 FvH4_7g24520
malus_domestica	MD01G1153200.v1.1 MD04G1153700.v1.1 MD07G1222200.v1.1 MD12G1166900.v1.1
prunus_persica	Prupe.2G250400_v2.0.a1 Prupe.6G277800_v2.0.a1
pyrus_communis	pycom01g17080 pycom07g20080 pycom12g15890
rosa_chinensis	RchiOBHm_Chr1g0370271 RchiOBHm_Chr1g0370291 RchiOBHm_Chr3g0463021
rosa_laevigata	RLG00000024816 RLG00000027058 RLG00000027059 RLG00000027062
rosa_multiflora	Rmu_sc0000766.1_g000029 Rmu_sc0001657.1_g000001 Rmu_sc0006707.1_g000006 Rmu_sc0008124.1_g000028
rosa_roxburghii	Rroxscaffold_4G00286680 Rroxscaffold_4G00287340 Rroxscaffold_6G00417040
rosa_rugosa	Rorug01G0355600 Rorug03G0061100 Rorug03G0061200 Rorug03G0061200
rosa_samantha	Rh1AG363900 Rh1BG327000 Rh1BG327100 Rh1DG357400 Rh3AG118800 Rh3DG124700
rosa_wichuraiana	Rw1G032030 Rw3G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	501
AccII	CGCG	1 cut(s)	217
AciI	CCGC	8 cut(s)	636, 645, 648, 674, 693, 696, 702, 1138
AclWI	GGATC	3 cut(s)	56, 774, 1119
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	1197
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	3 cut(s)	493, 843, 1193
AjnI	CCWGG	1 cut(s)	486
AloI	GAACNNNNNNTCC	2 cut(s)	1034, 1066
Alw21I	GWGCWC	2 cut(s)	535, 589
AlwI	GGATC	3 cut(s)	56, 774, 1119
AoxI	GGCC	6 cut(s)	10, 221, 319, 474, 1070, 1298
ApeKI	GCWGC	3 cut(s)	71, 260, 1273
ApoI	RAATTY	1 cut(s)	1197
Asp700I	GAANNNNTTC	2 cut(s)	1317, 1335
AspLEI	GCGC	1 cut(s)	217
AsuC2I	CCSGG	4 cut(s)	171, 936, 1097, 1222
AsuHPI	GGTGA	1 cut(s)	587
AsuII	TTCGAA	1 cut(s)	823
BanII	GRGCYC	2 cut(s)	535, 589
Bbv12I	GWGCWC	2 cut(s)	535, 589
BbvI	GCAGC	3 cut(s)	58, 272, 1285
BccI	CCATC	4 cut(s)	192, 237, 335, 887
BceAI	ACGGC	1 cut(s)	689
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	1 cut(s)	488
BcnI	CCSGG	4 cut(s)	171, 936, 1097, 1222
BfaI	CTAG	2 cut(s)	782, 1014
BfmI	CTRYAG	2 cut(s)	816, 1283
BglII	AGATCT	1 cut(s)	564
BisI	GCNGC	7 cut(s)	72, 261, 648, 674, 696, 1139, 1274
BlsI	GCNGC	7 cut(s)	73, 262, 649, 675, 697, 1140, 1275
Bme1390I	CCNGG	5 cut(s)	171, 488, 936, 1097, 1222
BmrFI	CCNGG	5 cut(s)	171, 488, 936, 1097, 1222
BmsI	GCATC	2 cut(s)	272, 370
BplI	GAGNNNNNCTC	4 cut(s)	522, 554, 671, 703
BpmI	CTGGAG	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	367
Bpu14I	TTCGAA	1 cut(s)	823
BpuEI	CTTGAG	2 cut(s)	813, 1253
BpuMI	CCSGG	4 cut(s)	171, 936, 1097, 1222
BsaJI	CCNNGG	4 cut(s)	269, 486, 487, 935
Bsc4I	CCNNNNNNNGG	3 cut(s)	493, 843, 1193
Bse118I	RCCGGY	1 cut(s)	811
Bse1I	ACTGG	2 cut(s)	75, 548
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	4 cut(s)	269, 486, 487, 935
BseGI	GGATG	5 cut(s)	229, 327, 778, 800, 1255
BseLI	CCNNNNNNNGG	3 cut(s)	493, 843, 1193
BseNI	ACTGG	2 cut(s)	75, 548
BseRI	GAGGAG	7 cut(s)	231, 596, 610, 613, 616, 619, 1256
BseXI	GCAGC	3 cut(s)	58, 272, 1285
Bsh1236I	CGCG	1 cut(s)	217
BshFI	GGCC	6 cut(s)	12, 223, 321, 476, 1072, 1300
BsiHKAI	GWGCWC	2 cut(s)	535, 589
BsiSI	CCGG	6 cut(s)	170, 677, 812, 935, 1096, 1221
BslI	CCNNNNNNNGG	3 cut(s)	493, 843, 1193
BsmI	GAATGC	2 cut(s)	872, 1206
BsnI	GGCC	6 cut(s)	12, 223, 321, 476, 1072, 1300
Bsp119I	TTCGAA	1 cut(s)	823
Bsp1286I	GDGCHC	2 cut(s)	535, 589
Bsp143I	GATC	5 cut(s)	48, 315, 564, 766, 1111
BspACI	CCGC	8 cut(s)	636, 645, 648, 674, 693, 696, 702, 1138
BspANI	GGCC	6 cut(s)	12, 223, 321, 476, 1072, 1300
BspFNI	CGCG	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	1287
BspPI	GGATC	3 cut(s)	56, 774, 1119
BspT104I	TTCGAA	1 cut(s)	823
BsrFI	RCCGGY	1 cut(s)	811
BsrI	ACTGG	2 cut(s)	75, 548
BssAI	RCCGGY	1 cut(s)	811
BssECI	CCNNGG	4 cut(s)	269, 486, 487, 935
BssMI	GATC	5 cut(s)	48, 315, 564, 766, 1111
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	3 cut(s)	28, 757, 922
Bst6I	CTCTTC	5 cut(s)	278, 453, 522, 616, 637
BstBI	TTCGAA	1 cut(s)	823
BstC8I	GCNNGC	6 cut(s)	204, 531, 549, 809, 813, 1302
BstDEI	CTNAG	1 cut(s)	367
BstEII	GGTNACC	1 cut(s)	593
BstF5I	GGATG	5 cut(s)	229, 327, 778, 800, 1255
BstFNI	CGCG	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	5 cut(s)	51, 318, 567, 769, 1114
BstMBI	GATC	5 cut(s)	48, 315, 564, 766, 1111
BstMWI	GCNNNNNNNGC	7 cut(s)	212, 535, 544, 644, 670, 701, 1282
BstNI	CCWGG	1 cut(s)	488
BstNSI	RCATGY	2 cut(s)	1106, 1327
BstPI	GGTNACC	1 cut(s)	593
BstSCI	CCNGG	5 cut(s)	169, 486, 934, 1095, 1220
BstSFI	CTRYAG	2 cut(s)	816, 1283
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	58, 272, 1285
BstX2I	RGATCY	4 cut(s)	48, 564, 766, 1111
BstXI	CCANNNNNNTGG	1 cut(s)	472
BstYI	RGATCY	4 cut(s)	48, 564, 766, 1111
BsuRI	GGCC	6 cut(s)	12, 223, 321, 476, 1072, 1300
BtgZI	GCGATG	2 cut(s)	249, 347
BtsCI	GGATG	5 cut(s)	229, 327, 778, 800, 1255
BtsI	GCAGTG	1 cut(s)	990
BtsIMutI	CAGTG	1 cut(s)	990
Cac8I	GCNNGC	6 cut(s)	204, 531, 549, 809, 813, 1302
CfoI	GCGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	811
CseI	GACGC	2 cut(s)	206, 920
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	5 cut(s)	8, 944, 1103, 1203, 1324
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	5 cut(s)	50, 317, 566, 768, 1113
DpnII	GATC	5 cut(s)	48, 315, 564, 766, 1111
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	5 cut(s)	278, 453, 522, 616, 637
EarI	CTCTTC	5 cut(s)	278, 453, 522, 616, 637
EciI	GGCGGA	2 cut(s)	634, 691
Ecl136II	GAGCTC	2 cut(s)	533, 587
Eco147I	AGGCCT	1 cut(s)	1300
Eco24I	GRGCYC	2 cut(s)	535, 589
Eco53kI	GAGCTC	2 cut(s)	533, 587
Eco57I	CTGAAG	1 cut(s)	326
Eco91I	GGTNACC	1 cut(s)	593
EcoICRI	GAGCTC	2 cut(s)	533, 587
EcoO65I	GGTNACC	1 cut(s)	593
EcoRI	GAATTC	1 cut(s)	1197
EcoRII	CCWGG	1 cut(s)	486
EcoT22I	ATGCAT	1 cut(s)	1208
EcoT38I	GRGCYC	2 cut(s)	535, 589
FaeI	CATG	5 cut(s)	11, 947, 1106, 1206, 1327
FatI	CATG	5 cut(s)	7, 943, 1102, 1202, 1323
FauI	CCCGC	1 cut(s)	700
FauNDI	CATATG	2 cut(s)	106, 793
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	7 cut(s)	72, 261, 648, 674, 696, 1139, 1274
FokI	GGATG	5 cut(s)	216, 314, 785, 787, 1262
FriOI	GRGCYC	2 cut(s)	535, 589
Fsp4HI	GCNGC	7 cut(s)	72, 261, 648, 674, 696, 1139, 1274
FspBI	CTAG	2 cut(s)	782, 1014
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	7 cut(s)	72, 261, 648, 674, 696, 1139, 1274
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	6 cut(s)	12, 223, 321, 476, 1072, 1300
HapII	CCGG	6 cut(s)	170, 677, 812, 935, 1096, 1221
HgaI	GACGC	2 cut(s)	206, 920
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	5 cut(s)	11, 947, 1106, 1206, 1327
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	4 cut(s)	135, 483, 1027, 1156
HindII	GTYRAC	4 cut(s)	135, 483, 1027, 1156
HinfI	GANTC	6 cut(s)	65, 454, 514, 686, 728, 1351
HpaII	CCGG	6 cut(s)	170, 677, 812, 935, 1096, 1221
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	6 cut(s)	135, 483, 502, 990, 1027, 1156
Hpy188I	TCNGA	6 cut(s)	40, 453, 459, 584, 733, 880
Hpy188III	TCNNGA	3 cut(s)	764, 770, 1001
Hpy8I	GTNNAC	6 cut(s)	135, 483, 502, 990, 1027, 1156
Hpy99I	CGWCG	2 cut(s)	222, 671
HpyCH4III	ACNGT	3 cut(s)	28, 757, 922
HpyCH4V	TGCA	7 cut(s)	104, 791, 943, 974, 1183, 1206, 1285
HpyF10VI	GCNNNNNNNGC	7 cut(s)	212, 535, 544, 644, 670, 701, 1282
HpyF3I	CTNAG	1 cut(s)	367
Hsp92II	CATG	5 cut(s)	11, 947, 1106, 1206, 1327
HspAI	GCGC	1 cut(s)	215
KroI	GCCGGC	1 cut(s)	811
KroNI	GCCGGC	1 cut(s)	813
Kzo9I	GATC	5 cut(s)	48, 315, 564, 766, 1111
LmnI	GCTCC	1 cut(s)	1099
Lsp1109I	GCAGC	3 cut(s)	58, 272, 1285
LweI	GCATC	2 cut(s)	272, 370
MaeI	CTAG	2 cut(s)	782, 1014
MaeIII	GTNAC	2 cut(s)	593, 916
MalI	GATC	5 cut(s)	50, 317, 566, 768, 1113
MboI	GATC	5 cut(s)	48, 315, 564, 766, 1111
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	4 cut(s)	48, 564, 766, 1111
MhlI	GDGCHC	2 cut(s)	535, 589
MluCI	AATT	4 cut(s)	159, 910, 1143, 1197
MlyI	GAGTC	3 cut(s)	463, 508, 680
MmeI	TCCRAC	1 cut(s)	18
Mph1103I	ATGCAT	1 cut(s)	1208
MroNI	GCCGGC	1 cut(s)	811
MroXI	GAANNNNTTC	2 cut(s)	1317, 1335
MspI	CCGG	6 cut(s)	170, 677, 812, 935, 1096, 1221
MspR9I	CCNGG	5 cut(s)	171, 488, 936, 1097, 1222
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	2 cut(s)	872, 1206
MvaI	CCWGG	1 cut(s)	488
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	7 cut(s)	212, 535, 544, 644, 670, 701, 1282
NaeI	GCCGGC	1 cut(s)	813
NciI	CCSGG	4 cut(s)	171, 936, 1097, 1222
NdeI	CATATG	2 cut(s)	106, 793
NdeII	GATC	5 cut(s)	48, 315, 564, 766, 1111
NgoMIV	GCCGGC	1 cut(s)	811
NlaIII	CATG	5 cut(s)	11, 947, 1106, 1206, 1327
NmeAIII	GCCGAG	2 cut(s)	294, 502
NmuCI	GTSAC	2 cut(s)	593, 916
NsiI	ATGCAT	1 cut(s)	1208
NspI	RCATGY	2 cut(s)	1106, 1327
NspV	TTCGAA	1 cut(s)	823
PasI	CCCWGGG	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	1300
PctI	GAATGC	2 cut(s)	872, 1206
PdiI	GCCGGC	1 cut(s)	813
PdmI	GAANNNNTTC	2 cut(s)	1317, 1335
PfeI	GAWTC	3 cut(s)	65, 728, 1351
PkrI	GCNGC	7 cut(s)	73, 262, 649, 675, 697, 1140, 1275
PleI	GAGTC	3 cut(s)	462, 508, 680
PpsI	GAGTC	3 cut(s)	462, 508, 680
Psp124BI	GAGCTC	2 cut(s)	535, 589
Psp6I	CCWGG	1 cut(s)	486
PspEI	GGTNACC	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	486
PstI	CTGCAG	1 cut(s)	1287
PsuI	RGATCY	4 cut(s)	48, 564, 766, 1111
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
SacI	GAGCTC	2 cut(s)	535, 589
SatI	GCNGC	7 cut(s)	72, 261, 648, 674, 696, 1139, 1274
Sau3AI	GATC	5 cut(s)	48, 315, 564, 766, 1111
SchI	GAGTC	3 cut(s)	463, 508, 680
ScrFI	CCNGG	5 cut(s)	171, 488, 936, 1097, 1222
SduI	GDGCHC	2 cut(s)	535, 589
SfaNI	GCATC	2 cut(s)	272, 370
SfcI	CTRYAG	2 cut(s)	816, 1283
SfuI	TTCGAA	1 cut(s)	823
SmlI	CTYRAG	3 cut(s)	18, 828, 1268
SmoI	CTYRAG	3 cut(s)	18, 828, 1268
Sse9I	AATT	4 cut(s)	159, 910, 1143, 1197
SseBI	AGGCCT	1 cut(s)	1300
SsiI	CCGC	8 cut(s)	636, 645, 648, 674, 693, 696, 702, 1138
SspMI	CTAG	2 cut(s)	782, 1014
SstI	GAGCTC	2 cut(s)	535, 589
StuI	AGGCCT	1 cut(s)	1300
StyD4I	CCNGG	5 cut(s)	169, 486, 934, 1095, 1220
TaaI	ACNGT	3 cut(s)	28, 757, 922
TaqI	TCGA	4 cut(s)	123, 669, 823, 1060
TaqII	GACCGA	1 cut(s)	581
TasI	AATT	4 cut(s)	159, 910, 1143, 1197
TauI	GCSGC	4 cut(s)	650, 676, 698, 1141
TfiI	GAWTC	3 cut(s)	65, 728, 1351
TscAI	CASTG	1 cut(s)	997
TseFI	GTSAC	2 cut(s)	593, 916
TseI	GCWGC	3 cut(s)	71, 260, 1273
Tsp45I	GTSAC	2 cut(s)	593, 916
TspDTI	ATGAA	2 cut(s)	789, 810
TspGWI	ACGGA	1 cut(s)	1103
TspRI	CASTG	1 cut(s)	997
XapI	RAATTY	1 cut(s)	1197
XceI	RCATGY	2 cut(s)	1106, 1327
XmiI	GTMKAC	1 cut(s)	501
XmnI	GAANNNNTTC	2 cut(s)	1317, 1335
XspI	CTAG	2 cut(s)	782, 1014
Zsp2I	ATGCAT	1 cut(s)	1208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.