Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002737

Physical Location & Seq

Genomic Coordinates Reverse (-)

16469783 .. 16472464

Gene Structure 2682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCTGAGTTGACTCAGGGCGAGGTGGTCTACTCGCCCAAGACTCTCCAAGTCTGGCGAGCTCTGCTCAACTGGTTCGGCTTCTTCTTCCAGATCTTCCTCCGAATCCTCCGAGCTCTCGGTCACCACCCCCTCCTCTCTTCCTCCTCCTCCTCTTCCGCTTCTTCCGCCGCCTTCAAATCACTGCCCGTCATCGAGCTGCCCGAGAACGACTCTCCCGCCGCCTCCGCCGTTGTAATCGCCGACACTCCCGATTCCGACTCCGACGACCCTTTTGAAAAGCTCACGGTAGTTCTGGACCTGGATGAAACCCTAGTGTGTGCATATGAAACATCCAGCTTGCCGGCTGTAGTTCGAACTCAAGCAACTGAAGGTGGGATGAAGTGGTTTGAGCTTGAATGCGTATCTTCGGACAAGGAATGTGATGGCAAACCGAAGGTCAATTATGTCACAGTCTTTGAGCGTCCGGGGTTGCATGACTTCCTAAAACAAGTTAGTCAGTTTGCAGAGCTTGTGTTATTCACTGCTGGTCTTGAAGGTTATGCTAGGCCACTTGTTGACAGAATAGATGTGGATAATCTGTTCAGTTGTCGACTTTATCGGCCTTCAACAACTAGCACGGAATACCGGGAGCATGTGAAGGATCTATCTGGTCTATCAAAGGATATGCGCCGAATTGTTATTGTTGACAACAATCCTTTCAGTTTCTTGTTGCAACCTTCGAATGGAATTCCATGCATTCCATTTTCTGCCGGGCAAACACACGACACACAGGTTTCTGCACAGCAGGTGTGTTCACTGCAATTTGTTGATGCAAGGCTGTGTTTTCGCCAGGCGTCGAACAGCTGCGCCTCACTATCATACGAAAACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

292

Amino Acids

32.28

Weight (kDa)

4.93

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55960
fragaria_vesca	FvH4_6g11400 FvH4_6g11400 FvH4_7g24520
malus_domestica	MD01G1153200.v1.1 MD04G1153700.v1.1 MD07G1222200.v1.1 MD12G1166900.v1.1
prunus_persica	Prupe.2G250400_v2.0.a1 Prupe.6G277800_v2.0.a1
pyrus_communis	pycom01g17080 pycom07g20080 pycom12g15890
rosa_chinensis	RchiOBHm_Chr1g0370271 RchiOBHm_Chr1g0370291 RchiOBHm_Chr3g0463021
rosa_laevigata	RLG00000024816 RLG00000027058 RLG00000027059 RLG00000027062
rosa_multiflora	Rmu_sc0000766.1_g000029 Rmu_sc0001657.1_g000001 Rmu_sc0006707.1_g000006 Rmu_sc0008124.1_g000028
rosa_roxburghii	Rroxscaffold_4G00286680 Rroxscaffold_4G00287340 Rroxscaffold_6G00417040
rosa_rugosa	Rorug01G0355600 Rorug03G0061100 Rorug03G0061200 Rorug03G0061200
rosa_samantha	Rh1AG363900 Rh1BG327000 Rh1BG327100 Rh1DG357400 Rh3AG118800 Rh3DG124700
rosa_wichuraiana	Rw1G032030 Rw3G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	778
Acc36I	ACCTGC	1 cut(s)	778
AccI	GTMKAC	2 cut(s)	30, 592
AciI	CCGC	6 cut(s)	159, 168, 171, 219, 222, 228
AclWI	GGATC	1 cut(s)	651
AcsI	RAATTY	1 cut(s)	729
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	836
AfiI	CCNNNNNNNGG	1 cut(s)	725
AgsI	TTSAA	5 cut(s)	178, 278, 398, 536, 609
AjnI	CCWGG	2 cut(s)	300, 831
AloI	GAACNNNNNNTCC	2 cut(s)	566, 598
AluBI	AGCT	8 cut(s)	62, 116, 199, 283, 339, 394, 511, 846
AluI	AGCT	8 cut(s)	62, 116, 199, 283, 339, 394, 511, 846
Alw21I	GWGCWC	2 cut(s)	64, 118
AlwI	GGATC	1 cut(s)	651
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	2 cut(s)	548, 602
ApeKI	GCWGC	2 cut(s)	199, 846
ApoI	RAATTY	1 cut(s)	729
ArsI	GACNNNNNNTTYG	4 cut(s)	257, 289, 423, 455
AspLEI	GCGC	2 cut(s)	672, 851
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	3 cut(s)	468, 629, 754
AsuHPI	GGTGA	1 cut(s)	116
AsuII	TTCGAA	2 cut(s)	355, 722
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	298
BanII	GRGCYC	2 cut(s)	64, 118
Bbv12I	GWGCWC	2 cut(s)	64, 118
BbvI	GCAGC	2 cut(s)	186, 833
BccI	CCATC	1 cut(s)	419
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	2 cut(s)	302, 833
BcnI	CCSGG	3 cut(s)	468, 629, 754
BfaI	CTAG	3 cut(s)	314, 546, 615
BfmI	CTRYAG	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	778
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	4 cut(s)	171, 200, 222, 847
BlsI	GCNGC	4 cut(s)	172, 201, 223, 848
Bme1390I	CCNGG	5 cut(s)	302, 468, 629, 754, 833
Bme18I	GGWCC	1 cut(s)	298
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	298
BmrFI	CCNGG	5 cut(s)	302, 468, 629, 754, 833
BmsI	GCATC	1 cut(s)	802
BplI	GAGNNNNNCTC	4 cut(s)	51, 83, 197, 229
Bpu14I	TTCGAA	2 cut(s)	355, 722
BpuEI	CTTGAG	1 cut(s)	345
BpuMI	CCSGG	3 cut(s)	468, 629, 754
BsaHI	GRCGYC	1 cut(s)	836
BsaJI	CCNNGG	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	2 cut(s)	302, 833
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	3 cut(s)	310, 332, 384
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	4 cut(s)	125, 136, 139, 142
BseXI	GCAGC	2 cut(s)	186, 833
BsgI	GTGCAG	1 cut(s)	765
BshFI	GGCC	2 cut(s)	550, 604
BsiHKAI	GWGCWC	2 cut(s)	64, 118
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	4 cut(s)	344, 467, 628, 753
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmI	GAATGC	2 cut(s)	404, 738
BsnI	GGCC	2 cut(s)	550, 604
BsoBI	CYCGRG	1 cut(s)	203
Bsp119I	TTCGAA	2 cut(s)	355, 722
Bsp1286I	GDGCHC	2 cut(s)	64, 118
Bsp143I	GATC	2 cut(s)	93, 643
BspACI	CCGC	6 cut(s)	159, 168, 171, 219, 222, 228
BspANI	GGCC	2 cut(s)	550, 604
BspCNI	CTCAG	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	1 cut(s)	651
BspT104I	TTCGAA	2 cut(s)	355, 722
BsrFI	RCCGGY	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	2 cut(s)	93, 643
BssNI	GRCGYC	1 cut(s)	836
Bst2UI	CCWGG	2 cut(s)	302, 833
Bst4CI	ACNGT	2 cut(s)	289, 454
Bst6I	CTCTTC	2 cut(s)	145, 160
BstACI	GRCGYC	1 cut(s)	836
BstBI	TTCGAA	2 cut(s)	355, 722
BstC8I	GCNNGC	3 cut(s)	60, 341, 345
BstDEI	CTNAG	2 cut(s)	6, 15
BstEII	GGTNACC	1 cut(s)	122
BstF5I	GGATG	3 cut(s)	310, 332, 384
BstHHI	GCGC	2 cut(s)	672, 851
BstKTI	GATC	2 cut(s)	96, 646
BstMBI	GATC	2 cut(s)	93, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 167, 227
BstNI	CCWGG	2 cut(s)	302, 833
BstNSI	RCATGY	1 cut(s)	638
BstPI	GGTNACC	1 cut(s)	122
BstSCI	CCNGG	5 cut(s)	300, 466, 627, 752, 831
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	186, 833
BstX2I	RGATCY	2 cut(s)	93, 643
BstYI	RGATCY	2 cut(s)	93, 643
BsuRI	GGCC	2 cut(s)	550, 604
BtsCI	GGATG	3 cut(s)	310, 332, 384
BtsI	GCAGTG	3 cut(s)	182, 522, 797
BtsIMutI	CAGTG	3 cut(s)	182, 522, 797
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	3 cut(s)	60, 341, 345
CfoI	GCGC	2 cut(s)	672, 851
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	2 cut(s)	452, 825
CviAII	CATG	3 cut(s)	476, 635, 735
DdeI	CTNAG	2 cut(s)	6, 15
DpnI	GATC	2 cut(s)	95, 645
DpnII	GATC	2 cut(s)	93, 643
Eam1104I	CTCTTC	2 cut(s)	145, 160
EarI	CTCTTC	2 cut(s)	145, 160
EciI	GGCGGA	2 cut(s)	157, 217
Ecl136II	GAGCTC	2 cut(s)	62, 116
Eco24I	GRGCYC	2 cut(s)	64, 118
Eco47I	GGWCC	1 cut(s)	298
Eco53kI	GAGCTC	2 cut(s)	62, 116
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	122
EcoICRI	GAGCTC	2 cut(s)	62, 116
EcoO65I	GGTNACC	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	729
EcoRII	CCWGG	2 cut(s)	300, 831
EcoT22I	ATGCAT	1 cut(s)	740
EcoT38I	GRGCYC	2 cut(s)	64, 118
FaeI	CATG	3 cut(s)	479, 638, 738
FaiI	YATR	9 cut(s)	325, 327, 447, 477, 543, 636, 668, 736, 862
FatI	CATG	3 cut(s)	475, 634, 734
FauI	CCCGC	1 cut(s)	226
FauNDI	CATATG	1 cut(s)	325
FblI	GTMKAC	2 cut(s)	30, 592
Fnu4HI	GCNGC	4 cut(s)	171, 200, 222, 847
FokI	GGATG	3 cut(s)	317, 319, 391
FriOI	GRGCYC	2 cut(s)	64, 118
Fsp4HI	GCNGC	4 cut(s)	171, 200, 222, 847
FspBI	CTAG	3 cut(s)	314, 546, 615
GlaI	GCGC	2 cut(s)	671, 850
GluI	GCNGC	4 cut(s)	171, 200, 222, 847
HaeIII	GGCC	2 cut(s)	550, 604
HapII	CCGG	4 cut(s)	344, 467, 628, 753
HgaI	GACGC	2 cut(s)	452, 825
HhaI	GCGC	2 cut(s)	672, 851
Hin1I	GRCGYC	1 cut(s)	836
Hin1II	CATG	3 cut(s)	479, 638, 738
Hin6I	GCGC	2 cut(s)	670, 849
HinP1I	GCGC	2 cut(s)	670, 849
HincII	GTYRAC	4 cut(s)	12, 559, 593, 688
HindII	GTYRAC	4 cut(s)	12, 559, 593, 688
HinfI	GANTC	6 cut(s)	13, 43, 105, 212, 254, 260
HpaII	CCGG	4 cut(s)	344, 467, 628, 753
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	6 cut(s)	12, 31, 559, 593, 688, 797
Hpy188I	TCNGA	5 cut(s)	104, 113, 259, 265, 412
Hpy188III	TCNNGA	4 cut(s)	91, 251, 296, 533
Hpy8I	GTNNAC	6 cut(s)	12, 31, 559, 593, 688, 797
Hpy99I	CGWCG	2 cut(s)	269, 841
HpyAV	CCTTC	7 cut(s)	184, 365, 430, 530, 615, 634, 729
HpyCH4III	ACNGT	2 cut(s)	289, 454
HpyCH4V	TGCA	8 cut(s)	323, 475, 506, 715, 738, 782, 802, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 167, 227
HpyF3I	CTNAG	2 cut(s)	6, 15
Hsp92I	GRCGYC	1 cut(s)	836
Hsp92II	CATG	3 cut(s)	479, 638, 738
HspAI	GCGC	2 cut(s)	670, 849
KroI	GCCGGC	1 cut(s)	343
KroNI	GCCGGC	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	93, 643
LmnI	GCTCC	1 cut(s)	631
Lsp1109I	GCAGC	2 cut(s)	186, 833
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	3 cut(s)	314, 546, 615
MaeIII	GTNAC	2 cut(s)	122, 448
MalI	GATC	2 cut(s)	95, 645
MboI	GATC	2 cut(s)	93, 643
MboII	GAAGA	7 cut(s)	76, 79, 88, 132, 147, 156, 399
MflI	RGATCY	2 cut(s)	93, 643
MhlI	GDGCHC	2 cut(s)	64, 118
MluCI	AATT	4 cut(s)	442, 675, 729, 803
MlyI	GAGTC	4 cut(s)	7, 37, 206, 254
MmeI	TCCRAC	2 cut(s)	282, 288
Mph1103I	ATGCAT	1 cut(s)	740
MroNI	GCCGGC	1 cut(s)	343
MspA1I	CMGCKG	1 cut(s)	846
MspI	CCGG	4 cut(s)	344, 467, 628, 753
MspR9I	CCNGG	5 cut(s)	302, 468, 629, 754, 833
Mva1269I	GAATGC	2 cut(s)	404, 738
MvaI	CCWGG	2 cut(s)	302, 833
MwoI	GCNNNNNNNGC	3 cut(s)	64, 167, 227
NaeI	GCCGGC	1 cut(s)	345
NciI	CCSGG	3 cut(s)	468, 629, 754
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	2 cut(s)	93, 643
NgoMIV	GCCGGC	1 cut(s)	343
NlaIII	CATG	3 cut(s)	479, 638, 738
NmuCI	GTSAC	2 cut(s)	122, 448
NsiI	ATGCAT	1 cut(s)	740
NspI	RCATGY	1 cut(s)	638
NspV	TTCGAA	2 cut(s)	355, 722
PaqCI	CACCTGC	1 cut(s)	778
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	2 cut(s)	404, 738
PdiI	GCCGGC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	105, 254
PkrI	GCNGC	4 cut(s)	172, 201, 223, 848
PleI	GAGTC	4 cut(s)	7, 37, 206, 254
PpsI	GAGTC	4 cut(s)	7, 37, 206, 254
Psp124BI	GAGCTC	2 cut(s)	64, 118
Psp6I	CCWGG	2 cut(s)	300, 831
PspEI	GGTNACC	1 cut(s)	122
PspGI	CCWGG	2 cut(s)	300, 831
PspPI	GGNCC	1 cut(s)	298
PsuI	RGATCY	2 cut(s)	93, 643
PvuII	CAGCTG	1 cut(s)	846
SacI	GAGCTC	2 cut(s)	64, 118
SalI	GTCGAC	1 cut(s)	591
SatI	GCNGC	4 cut(s)	171, 200, 222, 847
Sau3AI	GATC	2 cut(s)	93, 643
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	4 cut(s)	7, 37, 206, 254
ScrFI	CCNGG	5 cut(s)	302, 468, 629, 754, 833
SduI	GDGCHC	2 cut(s)	64, 118
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	1 cut(s)	348
SfuI	TTCGAA	2 cut(s)	355, 722
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	4 cut(s)	442, 675, 729, 803
SsiI	CCGC	6 cut(s)	159, 168, 171, 219, 222, 228
SspMI	CTAG	3 cut(s)	314, 546, 615
SstI	GAGCTC	2 cut(s)	64, 118
StyD4I	CCNGG	5 cut(s)	300, 466, 627, 752, 831
TaaI	ACNGT	2 cut(s)	289, 454
TaqI	TCGA	5 cut(s)	195, 355, 592, 722, 839
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	4 cut(s)	442, 675, 729, 803
TauI	GCSGC	2 cut(s)	173, 224
TfiI	GAWTC	2 cut(s)	105, 254
TscAI	CASTG	3 cut(s)	189, 529, 804
TseFI	GTSAC	2 cut(s)	122, 448
TseI	GCWGC	2 cut(s)	199, 846
Tsp45I	GTSAC	2 cut(s)	122, 448
TspDTI	ATGAA	3 cut(s)	321, 342, 395
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	3 cut(s)	189, 529, 804
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	1 cut(s)	729
XceI	RCATGY	1 cut(s)	638
XmiI	GTMKAC	2 cut(s)	30, 592
XspI	CTAG	3 cut(s)	314, 546, 615
Zsp2I	ATGCAT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.