Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002737

Physical Location & Seq

Genomic Coordinates Forward (+)

47213004 .. 47215229

Gene Structure 2226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0355600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCATTGATATGGAGAGTGTCAAATATGAAGAGGAGTTTATCTTAAACTCTAGAGGAATGAAGCTTTTCACATGCAAATGGCTTCCAGAAAACAACAAGCCCCCGAAAGCCTTGATCTTCTTCTGTCATGGATACGCCATGGAGTGCAGCATCACCATGAACAGTACTGCAATCAGACTAGCCAAAGCAGGCTTTGCCATATATGGGATAGACTATGAAGGCCATGGAAAATCAGCTGGCCTTGCAGGCTTTGTCAAAAGCTTTGATGATGTTGTCGATGACTGCACCGCTCACTTCACAAAGATTTGCGAGAGCAAAGAGAACAAAGGGAAGATGAGGTATCTGTTGGGAGAGTCAATGGGAGGAGCTGTGGCTCTGCTTGTTCATAGGAAAAAGTCAGAATATTGGGATGGTGCGGTCTTAGTTGCCCCCATGTGTAAGATTGCAGATGAAATGAGGCCATCTCCGATTGTGGTCAGTGTTTTGACAAAGCTCTGCAGGGTTATTCCAACTTGGAAAATAATCCCTACAAATGATGTCATTGATTTAGCTTTCAAAGTACCCGAGGTTAGAAAACAGGTTAGGGAAAACCCCTACTGTTACAAAGGCCGTCCTCGTCTGCAGACCGGCTACGAACTCTTGAGGGTCAGCACGGAGCTTGAGCAAAGGCTTCAAGAGGTCACGTTGCCGTTCATAGTCCTCCACGGCGAAGACGATAAAGTCACTGACACCTCGGTTAGTAAACAACTCCATGAGGTGGCGTCGAGTTATGACAAGACATTGAAGTTGTACCCGAAAATGTGGCATGGTCTACTCTATGGAGAGCCACTTGAGAATATTGAGGTTGTGTTTTCGGACATAATCAATTGGTTAGACAAAAGATGTTCCATGGCAAATTCAAGGTTGGAGGGAGAGTTGAAGAGGGAGAATGACAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

314

Amino Acids

35.73

Weight (kDa)

7.03

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	35 - 273	1.4e-65	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	39 - 146	2.4e-06	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	40 - 272	2e-08	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55960
fragaria_vesca	FvH4_6g11400 FvH4_6g11400 FvH4_7g24520
malus_domestica	MD01G1153200.v1.1 MD04G1153700.v1.1 MD07G1222200.v1.1 MD12G1166900.v1.1
prunus_persica	Prupe.2G250400_v2.0.a1 Prupe.6G277800_v2.0.a1
pyrus_communis	pycom01g17080 pycom07g20080 pycom12g15890
rosa_chinensis	RchiOBHm_Chr1g0370271 RchiOBHm_Chr1g0370291 RchiOBHm_Chr3g0463021
rosa_laevigata	RLG00000024816 RLG00000027058 RLG00000027059 RLG00000027062
rosa_multiflora	Rmu_sc0000766.1_g000029 Rmu_sc0001657.1_g000001 Rmu_sc0006707.1_g000006 Rmu_sc0008124.1_g000028
rosa_roxburghii	Rroxscaffold_4G00286680 Rroxscaffold_4G00287340 Rroxscaffold_6G00417040
rosa_rugosa	Rorug01G0355600 Rorug03G0061100 Rorug03G0061200 Rorug03G0061200
rosa_samantha	Rh1AG363900 Rh1BG327000 Rh1BG327100 Rh1DG357400 Rh3AG118800 Rh3DG124700
rosa_wichuraiana	Rw1G032030 Rw3G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	722
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccBSI	CCGCTC	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	814
AciI	CCGC	2 cut(s)	291, 419
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	898
AcyI	GRCGYC	1 cut(s)	764
AfaI	GTAC	3 cut(s)	169, 564, 794
AfiI	CCNNNNNNNGG	2 cut(s)	207, 760
AgsI	TTSAA	5 cut(s)	559, 677, 787, 903, 922
AluBI	AGCT	7 cut(s)	67, 239, 264, 371, 496, 554, 661
AluI	AGCT	7 cut(s)	67, 239, 264, 371, 496, 554, 661
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	5 cut(s)	3, 223, 241, 461, 610
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	898
Asp700I	GAANNNNTTC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	566
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	720
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	2 cut(s)	407, 472
BceAI	ACGGC	3 cut(s)	597, 676, 724
BciVI	GTATCC	1 cut(s)	128
BfaI	CTAG	2 cut(s)	54, 182
BfmI	CTRYAG	2 cut(s)	499, 623
BfuI	GTATCC	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
BmcAI	AGTACT	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	566
BmsI	GCATC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	720
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
BpuEI	CTTGAG	3 cut(s)	664, 683, 854
BsaHI	GRCGYC	1 cut(s)	764
BsaJI	CCNNGG	6 cut(s)	141, 226, 567, 706, 735, 891
BsaXI	ACNNNNNCTCC	4 cut(s)	357, 387, 902, 932
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 760
Bse118I	RCCGGY	1 cut(s)	629
BseDI	CCNNGG	6 cut(s)	141, 226, 567, 706, 735, 891
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	207, 760
BseRI	GAGGAG	2 cut(s)	50, 381
BseXI	GCAGC	1 cut(s)	162
BsgI	GTGCAG	2 cut(s)	169, 271
BshFI	GGCC	5 cut(s)	5, 225, 243, 463, 612
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	1 cut(s)	630
BslI	CCNNNNNNNGG	2 cut(s)	207, 760
BsnI	GGCC	5 cut(s)	5, 225, 243, 463, 612
BsoBI	CYCGRG	1 cut(s)	566
Bsp143I	GATC	1 cut(s)	117
Bsp19I	CCATGG	3 cut(s)	141, 226, 891
BspACI	CCGC	2 cut(s)	291, 419
BspANI	GGCC	5 cut(s)	5, 225, 243, 463, 612
BspMAI	CTGCAG	2 cut(s)	503, 627
BsrBI	CCGCTC	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	629
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	6 cut(s)	141, 226, 567, 706, 735, 891
BssMI	GATC	1 cut(s)	117
BssNI	GRCGYC	1 cut(s)	764
BssT1I	CCWWGG	3 cut(s)	141, 226, 891
Bst4CI	ACNGT	2 cut(s)	167, 602
Bst6I	CTCTTC	2 cut(s)	27, 917
BstACI	GRCGYC	1 cut(s)	764
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	193, 241, 250
BstDEI	CTNAG	1 cut(s)	424
BstDSI	CCRYGG	4 cut(s)	141, 226, 706, 891
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 245, 249
BstNSI	RCATGY	1 cut(s)	78
BstSFI	CTRYAG	2 cut(s)	499, 623
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	720
BstXI	CCANNNNNNTGG	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	128
BsuRI	GGCC	5 cut(s)	5, 225, 243, 463, 612
BtgI	CCRYGG	4 cut(s)	141, 226, 706, 891
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	487, 726
Cac8I	GCNNGC	3 cut(s)	193, 241, 250
Cfr10I	RCCGGY	1 cut(s)	629
CseI	GACGC	1 cut(s)	753
Csp6I	GTAC	3 cut(s)	168, 563, 793
CviAII	CATG	9 cut(s)	75, 131, 142, 160, 227, 436, 755, 809, 892
CviQI	GTAC	3 cut(s)	168, 563, 793
DdeI	CTNAG	1 cut(s)	424
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
DrdI	GACNNNNNNGTC	1 cut(s)	722
DseDI	GACNNNNNNGTC	1 cut(s)	722
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	27, 917
EarI	CTCTTC	2 cut(s)	27, 917
Eco130I	CCWWGG	3 cut(s)	141, 226, 891
Eco88I	CYCGRG	1 cut(s)	566
EcoT14I	CCWWGG	3 cut(s)	141, 226, 891
ErhI	CCWWGG	3 cut(s)	141, 226, 891
FaeI	CATG	9 cut(s)	78, 134, 145, 163, 230, 439, 758, 812, 895
FatI	CATG	9 cut(s)	74, 130, 141, 159, 226, 435, 754, 808, 891
FblI	GTMKAC	1 cut(s)	814
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	2 cut(s)	54, 182
GluI	GCNGC	1 cut(s)	151
HaeIII	GGCC	5 cut(s)	5, 225, 243, 463, 612
HapII	CCGG	1 cut(s)	630
HgaI	GACGC	1 cut(s)	753
Hin1I	GRCGYC	1 cut(s)	764
Hin1II	CATG	9 cut(s)	78, 134, 145, 163, 230, 439, 758, 812, 895
HindIII	AAGCTT	2 cut(s)	65, 262
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	746, 815
Hpy188I	TCNGA	4 cut(s)	179, 403, 471, 859
Hpy188III	TCNNGA	4 cut(s)	54, 89, 643, 677
Hpy8I	GTNNAC	2 cut(s)	746, 815
Hpy99I	CGWCG	1 cut(s)	769
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	2 cut(s)	167, 602
HpyCH4IV	ACGT	1 cut(s)	686
HpyCH4V	TGCA	8 cut(s)	78, 150, 173, 248, 288, 449, 501, 625
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 245, 249
HpyF3I	CTNAG	1 cut(s)	424
HpySE526I	ACGT	1 cut(s)	686
Hsp92I	GRCGYC	1 cut(s)	764
Hsp92II	CATG	9 cut(s)	78, 134, 145, 163, 230, 439, 758, 812, 895
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	368, 658
LpnPI	CCDG	7 cut(s)	102, 177, 225, 234, 487, 566, 643
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	54, 182
MaeII	ACGT	1 cut(s)	686
MaeIII	GTNAC	3 cut(s)	602, 682, 724
MalI	GATC	1 cut(s)	119
MbiI	CCGCTC	1 cut(s)	293
MboI	GATC	1 cut(s)	117
MboII	GAAGA	6 cut(s)	44, 112, 115, 346, 725, 934
MfeI	CAATTG	1 cut(s)	868
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	868, 898
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	2 cut(s)	536, 888
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	47
MslI	CAYNNNNRTG	3 cut(s)	11, 79, 158
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	1 cut(s)	630
MunI	CAATTG	1 cut(s)	868
MwoI	GCNNNNNNNGC	3 cut(s)	197, 245, 249
NcoI	CCATGG	3 cut(s)	141, 226, 891
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	9 cut(s)	78, 134, 145, 163, 230, 439, 758, 812, 895
NmuCI	GTSAC	2 cut(s)	682, 724
NspI	RCATGY	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	760
PkrI	GCNGC	1 cut(s)	152
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PstI	CTGCAG	2 cut(s)	503, 627
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	3 cut(s)	169, 564, 794
RsaNI	GTAC	3 cut(s)	168, 563, 793
RseI	CAYNNNNRTG	3 cut(s)	11, 79, 158
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	1 cut(s)	117
ScaI	AGTACT	1 cut(s)	169
SchI	GAGTC	1 cut(s)	365
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	2 cut(s)	499, 623
SmiMI	CAYNNNNRTG	3 cut(s)	11, 79, 158
SmlI	CTYRAG	3 cut(s)	643, 662, 833
SmoI	CTYRAG	3 cut(s)	643, 662, 833
Sse9I	AATT	2 cut(s)	868, 898
SsiI	CCGC	2 cut(s)	291, 419
SspI	AATATT	2 cut(s)	407, 841
SspMI	CTAG	2 cut(s)	54, 182
StyI	CCWWGG	3 cut(s)	141, 226, 891
TaaI	ACNGT	2 cut(s)	167, 602
TaiI	ACGT	1 cut(s)	689
TaqI	TCGA	2 cut(s)	279, 767
TasI	AATT	2 cut(s)	868, 898
TatI	WGTACW	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	2 cut(s)	487, 733
TseFI	GTSAC	2 cut(s)	682, 724
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	2 cut(s)	682, 724
TspDTI	ATGAA	7 cut(s)	45, 77, 176, 234, 377, 468, 685
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	2 cut(s)	487, 733
Van91I	CCANNNNNTGG	1 cut(s)	760
XapI	RAATTY	1 cut(s)	898
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	1 cut(s)	78
XmiI	GTMKAC	1 cut(s)	814
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	2 cut(s)	54, 182
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.