Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002737

Physical Location & Seq

Genomic Coordinates Reverse (-)

26087469 .. 26089610

Gene Structure 2142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G277800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCGCCGATTGGCCAGGCTGCCGAAGTGTACGTGCCGAGGAGCATTCAACTATGGCGAGCTTTCATCAACTGGATGGGCTTCTATTTCCAGATCCTTCTTCAGATCCTGAGAGACACGCCTTGCGTTCCTCACCTGCTGTCGTTCATAGGCCCCTCTTCACCTTCTTTCAGACCCTTGCCTGTCGTCGAACTCCCTCTCAACGACTTGTCGTCCCCTGCCCAAGTTGAAAACGGTGTCATAAATGGTCCCCGCCACATTGAAAAGCTCACGGTAGTTCTTGACTTGGATGAGACTCTAGTATGTGCTTATGAAACATGTACCTTGCCTGCAATTGTTCGAACTCAAGCGACGGAAGCTGGGCTCAAGTGGTTTGAGATAGAATGTGTATCTTCTGACAAGGAGCCAGATGGGAAACCAAAAGTCAATCATGTGACAGTGTTTGAACGTCCTGGTTTGCGAGAGTTCTTGAAACAGGTTTATGAATTTGCTGATCTTGTACTATTCACTGCTGGTGTTGAAGACTATGCTAGACCACTTGTTGACAGAATTGATGTGGAGAATCTATTTAAGCTTCGTCTTTATCGGCCTTCTACTGTTAGCACGGAATGCCGGGAACATGTGAAAGATCTATCTTGTTTGTCAAAAGATCTCTGTCGAACTGTGATTGTTGACAACAACCCATTCAGTTTTTTGCTGCAACCGCTGAATGGAATTCCATGTGTTCCATTTTCTGCTGGACAACCAAACGATGATCAGCTTTTGGAGGTCCTGCTTCCTCACCTCAAGCAGCTCTCCCTGCAAAAAGATGTGAGGCCTGTGCTTTATGAGAGATTCCACATGCCTGAATGGTTTCAAATGCATGGATTTCCTGTTTCCGTTTTGACAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

298

Amino Acids

33.71

Weight (kDa)

5.31

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55960
fragaria_vesca	FvH4_6g11400 FvH4_6g11400 FvH4_7g24520
malus_domestica	MD01G1153200.v1.1 MD04G1153700.v1.1 MD07G1222200.v1.1 MD12G1166900.v1.1
prunus_persica	Prupe.2G250400_v2.0.a1 Prupe.6G277800_v2.0.a1
pyrus_communis	pycom01g17080 pycom07g20080 pycom12g15890
rosa_chinensis	RchiOBHm_Chr1g0370271 RchiOBHm_Chr1g0370291 RchiOBHm_Chr3g0463021
rosa_laevigata	RLG00000024816 RLG00000027058 RLG00000027059 RLG00000027062
rosa_multiflora	Rmu_sc0000766.1_g000029 Rmu_sc0001657.1_g000001 Rmu_sc0006707.1_g000006 Rmu_sc0008124.1_g000028
rosa_roxburghii	Rroxscaffold_4G00286680 Rroxscaffold_4G00287340 Rroxscaffold_6G00417040
rosa_rugosa	Rorug01G0355600 Rorug03G0061100 Rorug03G0061200 Rorug03G0061200
rosa_samantha	Rh1AG363900 Rh1BG327000 Rh1BG327100 Rh1DG357400 Rh3AG118800 Rh3DG124700
rosa_wichuraiana	Rw1G032030 Rw3G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	144
Acc36I	ACCTGC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	253, 704
AclWI	GGATC	2 cut(s)	88, 100
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	485, 714
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	32, 322, 501
AfiI	CCNNNNNNNGG	1 cut(s)	710
AflIII	ACRYGT	2 cut(s)	317, 619
AgsI	TTSAA	7 cut(s)	50, 230, 263, 446, 472, 521, 857
AhdI	GACNNNNNGTC	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	15, 451
AluBI	AGCT	6 cut(s)	62, 268, 359, 574, 760, 793
AluI	AGCT	6 cut(s)	62, 268, 359, 574, 760, 793
Alw26I	GTCTC	2 cut(s)	108, 287
AlwI	GGATC	2 cut(s)	88, 100
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	4 cut(s)	13, 151, 587, 815
ApeKI	GCWGC	3 cut(s)	20, 697, 790
ApoI	RAATTY	2 cut(s)	485, 714
Asp700I	GAANNNNTTC	1 cut(s)	852
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	152, 248, 769
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	3 cut(s)	125, 153, 773
AsuII	TTCGAA	1 cut(s)	340
AvaII	GGWCC	2 cut(s)	248, 769
BalI	TGGCCA	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	528
BbvI	GCAGC	3 cut(s)	7, 684, 802
BccI	CCATC	2 cut(s)	70, 404
BciT130I	CCWGG	2 cut(s)	17, 453
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	2 cut(s)	108, 287
BfaI	CTAG	2 cut(s)	299, 531
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	144
BglII	AGATCT	2 cut(s)	628, 649
BisI	GCNGC	3 cut(s)	21, 698, 791
BlsI	GCNGC	3 cut(s)	22, 699, 792
Bme1390I	CCNGG	3 cut(s)	17, 453, 614
Bme18I	GGWCC	2 cut(s)	248, 769
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmgT120I	GGNCC	3 cut(s)	152, 248, 769
BmiI	GGNNCC	4 cut(s)	6, 154, 250, 405
BmrFI	CCNGG	3 cut(s)	17, 453, 614
BpiI	GAAGAC	1 cut(s)	528
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	3 cut(s)	330, 350, 770
BpuMI	CCSGG	1 cut(s)	614
BsaAI	YACGTR	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	710
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	2 cut(s)	17, 453
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	81, 295
BseLI	CCNNNNNNNGG	1 cut(s)	710
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	3 cut(s)	7, 684, 802
BseYI	CCCAGC	1 cut(s)	359
BshFI	GGCC	4 cut(s)	15, 153, 589, 817
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	613
BslFI	GGGAC	2 cut(s)	199, 234
BslI	CCNNNNNNNGG	1 cut(s)	710
BsmAI	GTCTC	2 cut(s)	108, 287
BsmFI	GGGAC	2 cut(s)	199, 234
BsmI	GAATGC	2 cut(s)	45, 614
BsnI	GGCC	4 cut(s)	15, 153, 589, 817
Bsp119I	TTCGAA	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	6 cut(s)	93, 105, 493, 628, 649, 754
BspACI	CCGC	2 cut(s)	253, 704
BspANI	GGCC	4 cut(s)	15, 153, 589, 817
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	4 cut(s)	6, 154, 250, 405
BspMI	ACCTGC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	88, 100
BspT104I	TTCGAA	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	6 cut(s)	93, 105, 493, 628, 649, 754
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	17, 453
Bst4CI	ACNGT	5 cut(s)	236, 274, 439, 598, 664
Bst6I	CTCTTC	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	609
BstBAI	YACGTR	1 cut(s)	34
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	60, 330
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	81, 295
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	6 cut(s)	96, 108, 496, 631, 652, 757
BstMAI	GTCTC	2 cut(s)	108, 287
BstMBI	GATC	6 cut(s)	93, 105, 493, 628, 649, 754
BstMWI	GCNNNNNNNGC	4 cut(s)	356, 609, 703, 799
BstNI	CCWGG	2 cut(s)	17, 453
BstNSI	RCATGY	3 cut(s)	321, 623, 844
BstSCI	CCNGG	3 cut(s)	15, 451, 612
BstV1I	GCAGC	3 cut(s)	7, 684, 802
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	4 cut(s)	93, 105, 628, 649
BstYI	RGATCY	4 cut(s)	93, 105, 628, 649
BsuRI	GGCC	4 cut(s)	15, 153, 589, 817
BtsCI	GGATG	2 cut(s)	81, 295
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	444, 507
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	60, 330
CaiI	CAGNNNCTG	1 cut(s)	109
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	152, 248, 769
Csp6I	GTAC	3 cut(s)	31, 321, 500
CviAII	CATG	7 cut(s)	318, 431, 620, 720, 841, 863, 891
CviQI	GTAC	3 cut(s)	31, 321, 500
DdeI	CTNAG	1 cut(s)	110
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	6 cut(s)	95, 107, 495, 630, 651, 756
DpnII	GATC	6 cut(s)	93, 105, 493, 628, 649, 754
DriI	GACNNNNNGTC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	163
Eam1105I	GACNNNNNGTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	163
Eco147I	AGGCCT	1 cut(s)	817
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	2 cut(s)	248, 769
Eco57I	CTGAAG	1 cut(s)	86
EcoO109I	RGGNCCY	2 cut(s)	152, 769
EcoRI	GAATTC	1 cut(s)	714
EcoRII	CCWGG	2 cut(s)	15, 451
EcoT22I	ATGCAT	1 cut(s)	864
EcoT38I	GRGCYC	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	7 cut(s)	321, 434, 623, 723, 844, 866, 894
FaqI	GGGAC	2 cut(s)	199, 234
FatI	CATG	7 cut(s)	317, 430, 619, 719, 840, 862, 890
FauI	CCCGC	1 cut(s)	260
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	3 cut(s)	21, 698, 791
FokI	GGATG	2 cut(s)	88, 302
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	3 cut(s)	21, 698, 791
FspBI	CTAG	2 cut(s)	299, 531
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	21, 698, 791
GsaI	CCCAGC	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	15, 153, 589, 817
HapII	CCGG	1 cut(s)	613
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	321, 434, 623, 723, 844, 866, 894
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	2 cut(s)	544, 673
HindII	GTYRAC	2 cut(s)	544, 673
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	3 cut(s)	295, 562, 834
HpaII	CCGG	1 cut(s)	613
HphI	GGTGA	3 cut(s)	125, 153, 773
Hpy166II	GTNNAC	3 cut(s)	31, 544, 673
Hpy188I	TCNGA	3 cut(s)	105, 173, 397
Hpy188III	TCNNGA	4 cut(s)	91, 109, 281, 469
Hpy8I	GTNNAC	3 cut(s)	31, 544, 673
Hpy99I	CGWCG	2 cut(s)	191, 355
HpyAV	CCTTC	3 cut(s)	107, 174, 600
HpyCH4III	ACNGT	5 cut(s)	236, 274, 439, 598, 664
HpyCH4IV	ACGT	2 cut(s)	33, 448
HpyCH4V	TGCA	4 cut(s)	332, 700, 802, 862
HpyF10VI	GCNNNNNNNGC	4 cut(s)	356, 609, 703, 799
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	2 cut(s)	33, 448
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	321, 434, 623, 723, 844, 866, 894
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	6 cut(s)	93, 105, 493, 628, 649, 754
LmnI	GCTCC	2 cut(s)	42, 403
Lsp1109I	GCAGC	3 cut(s)	7, 684, 802
MaeI	CTAG	2 cut(s)	299, 531
MaeII	ACGT	2 cut(s)	33, 448
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	6 cut(s)	95, 107, 495, 630, 651, 756
MboI	GATC	6 cut(s)	93, 105, 493, 628, 649, 754
MboII	GAAGA	4 cut(s)	92, 150, 384, 533
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	4 cut(s)	93, 105, 628, 649
MhlI	GDGCHC	1 cut(s)	366
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	4 cut(s)	333, 485, 549, 714
MluNI	TGGCCA	1 cut(s)	15
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	8 cut(s)	33, 141, 166, 207, 760, 789, 794, 807
Mox20I	TGGCCA	1 cut(s)	15
Mph1103I	ATGCAT	1 cut(s)	864
MroXI	GAANNNNTTC	1 cut(s)	852
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	1 cut(s)	570
Msp20I	TGGCCA	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	706
MspI	CCGG	1 cut(s)	613
MspR9I	CCNGG	3 cut(s)	17, 453, 614
MunI	CAATTG	1 cut(s)	333
Mva1269I	GAATGC	2 cut(s)	45, 614
MvaI	CCWGG	2 cut(s)	17, 453
MwoI	GCNNNNNNNGC	4 cut(s)	356, 609, 703, 799
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	614
NdeII	GATC	6 cut(s)	93, 105, 493, 628, 649, 754
NlaIII	CATG	7 cut(s)	321, 434, 623, 723, 844, 866, 894
NlaIV	GGNNCC	4 cut(s)	6, 154, 250, 405
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	433
NsiI	ATGCAT	1 cut(s)	864
NspI	RCATGY	3 cut(s)	321, 623, 844
NspV	TTCGAA	1 cut(s)	340
PaqCI	CACCTGC	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	817
PciI	ACATGT	2 cut(s)	317, 619
PctI	GAATGC	2 cut(s)	45, 614
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	2 cut(s)	562, 834
PkrI	GCNGC	3 cut(s)	22, 699, 792
PleI	GAGTC	1 cut(s)	289
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	769
PscI	ACATGT	2 cut(s)	317, 619
Psp5II	RGGWCCY	1 cut(s)	769
Psp6I	CCWGG	2 cut(s)	15, 451
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	2 cut(s)	15, 451
PspN4I	GGNNCC	4 cut(s)	6, 154, 250, 405
PspPI	GGNCC	3 cut(s)	152, 248, 769
PspPPI	RGGWCCY	1 cut(s)	769
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	4 cut(s)	93, 105, 628, 649
RsaI	GTAC	3 cut(s)	32, 322, 501
RsaNI	GTAC	3 cut(s)	31, 321, 500
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	3 cut(s)	21, 698, 791
Sau3AI	GATC	6 cut(s)	93, 105, 493, 628, 649, 754
Sau96I	GGNCC	3 cut(s)	152, 248, 769
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	3 cut(s)	17, 453, 614
SduI	GDGCHC	1 cut(s)	366
SfoI	GGCGCC	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	340
SinI	GGWCC	2 cut(s)	248, 769
SmlI	CTYRAG	3 cut(s)	345, 365, 785
SmoI	CTYRAG	3 cut(s)	345, 365, 785
Sse9I	AATT	4 cut(s)	333, 485, 549, 714
SseBI	AGGCCT	1 cut(s)	817
SsiI	CCGC	2 cut(s)	253, 704
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	299, 531
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	3 cut(s)	15, 451, 612
TaaI	ACNGT	5 cut(s)	236, 274, 439, 598, 664
TaiI	ACGT	2 cut(s)	36, 451
TaqI	TCGA	3 cut(s)	189, 340, 658
TasI	AATT	4 cut(s)	333, 485, 549, 714
TatI	WGTACW	1 cut(s)	499
TfiI	GAWTC	2 cut(s)	562, 834
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	2 cut(s)	444, 514
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	3 cut(s)	20, 697, 790
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	4 cut(s)	55, 136, 327, 498
TspGWI	ACGGA	3 cut(s)	368, 620, 868
TspRI	CASTG	2 cut(s)	444, 514
VpaK11BI	GGWCC	2 cut(s)	248, 769
XapI	RAATTY	2 cut(s)	485, 714
XceI	RCATGY	3 cut(s)	321, 623, 844
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	2 cut(s)	299, 531
Zsp2I	ATGCAT	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.